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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR014770
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 19 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.694s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0008399.1
n.a. Uncharacterized protein TCM_020954 [Theobroma cacao] gi|508714237|gb|EOY06134.1| chr0 3371318 3377602 -
2 domain predictions
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Lj0g3v0099809.1
n.a. Uncharacterized protein TCM_020954 [Theobroma cacao] gi|508714237|gb|EOY06134.1| chr0 42349729 42350524 +
2 domain predictions
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Lj1g3v2068720.1
n.a. Uncharacterized protein isoform 1 [Theobroma cacao] gi|508782497|gb|EOY29753.1| chr1 24471019 24474696 -
2 domain predictions
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Lj1g3v2311910.2
n.a. n.a. chr1 27176000 27179598 -
2 domain predictions
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Lj1g3v2311910.3
n.a. n.a. chr1 27176000 27179474 -
2 domain predictions
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Lj3g3v1906500.1
n.a. Uncharacterized protein TCM_044838 [Theobroma cacao] gi|508727773|gb|EOY19670.1| chr3 24438351 24455547 +
2 domain predictions
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Lj6g3v0057760.1
n.a. Uncharacterized protein TCM_020954 [Theobroma cacao] gi|508714237|gb|EOY06134.1| chr6 889866 893225 -
2 domain predictions
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Lj6g3v2156560.1
n.a. Uncharacterized protein isoform 2 [Theobroma cacao] gi|508783429|gb|EOY30685.1| chr6 24938625 24944354 -
2 domain predictions
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LotjaGi1g1v0405800.1
n.a. DUF810 family protein; TAIR: AT2G25800.1 elongation factor Ts (DUF810); Swiss-Prot: sp|P35164|RESE_BACSU Sensor histidine kinase ResE; TrEMBL-Plants: tr|I1JUV8|I1JUV8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0405800 LjG1.1_chr1 89488216 89493754 +
2 domain predictions
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LotjaGi1g1v0405800.2
n.a. DUF810 family protein; TAIR: AT2G25800.1 elongation factor Ts (DUF810); Swiss-Prot: sp|P35164|RESE_BACSU Sensor histidine kinase ResE; TrEMBL-Plants: tr|A0A151TDK2|A0A151TDK2_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0405800 LjG1.1_chr1 89488331 89492799 +
2 domain predictions
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LotjaGi2g1v0114900.1
n.a. DUF810 family protein; TAIR: AT1G04470.1 hypothetical protein (DUF810); Swiss-Prot: sp|Q9YLJ1|POLG_EC05N Genome polyprotein; TrEMBL-Plants: tr|K7MHQ0|K7MHQ0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0114900 LjG1.1_chr2 42325613 42332105 +
2 domain predictions
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LotjaGi2g1v0114900.2
n.a. DUF810 family protein; TAIR: AT2G33420.1 hypothetical protein (DUF810); Swiss-Prot: sp|Q9M4B5|PFD4_ARATH Probable prefoldin subunit 4; TrEMBL-Plants: tr|K7MHQ0|K7MHQ0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0114900 LjG1.1_chr2 42325613 42332105 +
2 domain predictions
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LotjaGi2g1v0222500.1
n.a. DUF810 family protein; TAIR: AT2G25800.1 elongation factor Ts (DUF810); Swiss-Prot: sp|Q9P0L2|MARK1_HUMAN Serine/threonine-protein kinase MARK1; TrEMBL-Plants: tr|A0A0S3TD62|A0A0S3TD62_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0222500 LjG1.1_chr2 67853078 67859143 +
2 domain predictions
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LotjaGi2g1v0222500.2
n.a. DUF810 family protein; TAIR: AT2G25800.1 elongation factor Ts (DUF810); Swiss-Prot: sp|P20471|NDVB_RHIME Protein NdvB; TrEMBL-Plants: tr|A0A0B2QAF5|A0A0B2QAF5_GLYSO Uncharacterized protein; Found in the gene: LotjaGi2g1v0222500 LjG1.1_chr2 67853561 67858445 +
2 domain predictions
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LotjaGi2g1v0222500.3
n.a. DUF810 family protein; TAIR: AT2G25800.1 elongation factor Ts (DUF810); Swiss-Prot: sp|P20471|NDVB_RHIME Protein NdvB; TrEMBL-Plants: tr|A0A0B2QAF5|A0A0B2QAF5_GLYSO Uncharacterized protein; Found in the gene: LotjaGi2g1v0222500 LjG1.1_chr2 67855290 67858445 +
2 domain predictions
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LotjaGi3g1v0316000.1
n.a. Glycerol kinase; TAIR: AT5G06970.1 plant/protein (DUF810); Swiss-Prot: sp|Q62769|UN13B_RAT Protein unc-13 homolog B; TrEMBL-Plants: tr|G7LHI4|G7LHI4_MEDTR Plant/MOJ9-14 protein; Found in the gene: LotjaGi3g1v0316000 LjG1.1_chr3 66965289 66983433 +
2 domain predictions
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LotjaGi3g1v0316000.2
n.a. Mammalian uncoordinated homology 13, domain 2; TAIR: AT5G06970.1 plant/protein (DUF810); Swiss-Prot: sp|Q3SZN2|SC23B_BOVIN Protein transport protein Sec23B; TrEMBL-Plants: tr|A0A0B2RXL4|A0A0B2RXL4_GLYSO Uncharacterized protein; Found in the gene: LotjaGi3g1v0316000 LjG1.1_chr3 66965990 66982603 +
2 domain predictions
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LotjaGi5g1v0158100.1
n.a. DUF810 family protein; TAIR: AT2G33420.1 hypothetical protein (DUF810); Swiss-Prot: sp|O00408|PDE2A_HUMAN cGMP-dependent 3',5'-cyclic phosphodiesterase; TrEMBL-Plants: tr|I1NI08|I1NI08_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0158100 LjG1.1_chr5 40752070 40757359 -
2 domain predictions
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LotjaGi6g1v0007700.1
n.a. DUF810 family protein; TAIR: AT2G33420.1 hypothetical protein (DUF810); Swiss-Prot: sp|O77384|LRR4_PLAF7 Protein PFC0760c; TrEMBL-Plants: tr|I1NEQ1|I1NEQ1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0007700 LjG1.1_chr6 1539459 1545797 -
2 domain predictions
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