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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR019956
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 119 results. Now displaying 1 of 3 with 50 rows per page. This search has taken 0.062s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0111459.1
n.a. PREDICTED: E3 ubiquitin-protein ligase UPL5-like [Glycine max] gi|356562613|ref|XP_003549564.1| chr0 48419514 48422238 +
2 domain predictions
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Lj0g3v0119929.1
n.a. PREDICTED: ubiquitin-NEDD8-like protein RUB2-like [Glycine max] gi|356525758|ref|XP_003531490.1| chr0 53212482 53215346 +
2 domain predictions
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Lj0g3v0175819.1
n.a. Polyubiquitin-A [Triticum urartu] gi|474093556|gb|EMS54972.1| chr0 84897532 84899697 +
2 domain predictions
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Lj0g3v0178099.1
n.a. polyubiquitin 10 [Arabidopsis thaliana] gi|240255756|ref|NP_849300.4| chr0 86267534 86269597 -
2 domain predictions
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Lj0g3v0328939.1
n.a. polyubiquitin, partial [Wolffia australiana] gi|374412404|gb|AEZ49160.1| chr0 171964218 171965972 -
2 domain predictions
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Lj0g3v0358289.1
n.a. PREDICTED: E3 ubiquitin-protein ligase UPL5-like [Glycine max] gi|356520102|ref|XP_003528704.1| chr0 188599547 188601878 -
2 domain predictions
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Lj1g3v0052520.1
n.a. PREDICTED: polyubiquitin 3-like [Cicer arietinum] gi|502134206|ref|XP_004502037.1| chr1 498773 499090 +
2 domain predictions
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Lj1g3v0683910.1
n.a. Ubiquitin supergroup,Ribosomal protein L40e [Theobroma cacao] gi|508776404|gb|EOY23660.1| chr1 8934391 8935359 +
2 domain predictions
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Lj1g3v1035300.1
n.a. Ubiquitin supergroup,Ribosomal protein L40e [Theobroma cacao] gi|508776404|gb|EOY23660.1| chr1 13002759 13005163 +
2 domain predictions
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Lj2g3v1415010.1
n.a. Ubiquitin [Medicago truncatula] gi|357519213|ref|XP_003629895.1| chr2 22244732 22245790 -
2 domain predictions
 –
Lj2g3v1644370.2
n.a. PREDICTED: ubiquilin-like [Cicer arietinum] gi|502161708|ref|XP_004512257.1| chr2 25537249 25542791 -
2 domain predictions
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Lj2g3v2197670.1
n.a. ubiquitin [Laccaria bicolor S238N]-H82] gi|170098594|ref|XP_001880516.1| chr2 32868264 32868815 -
2 domain predictions
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Lj2g3v2197670.2
n.a. ubiquitin [Laccaria bicolor S238N]-H82] gi|170098594|ref|XP_001880516.1| chr2 32868264 32868970 -
2 domain predictions
 –
Lj2g3v2197680.1
n.a. ubiquitin [Laccaria bicolor S238N]-H82] gi|170098594|ref|XP_001880516.1| chr2 32868264 32868706 -
2 domain predictions
 –
Lj3g3v0950900.1
n.a. n.a. chr3 12357900 12359259 +
2 domain predictions
 –
Lj3g3v0950910.1
n.a. polyubiquitin 14 [Arabidopsis thaliana] gi|30679302|ref|NP_849292.1| chr3 12358086 12360111 -
2 domain predictions
 –
Lj3g3v1541340.1
n.a. PREDICTED: polyubiquitin 3-like [Cicer arietinum] gi|502134206|ref|XP_004502037.1| chr3 19712064 19712381 +
2 domain predictions
 –
Lj3g3v2027460.1
n.a. polyubiquitin 14 [Arabidopsis thaliana] gi|30679302|ref|NP_849292.1| chr3 25966680 25968751 +
2 domain predictions
 –
Lj4g3v0120060.1
n.a. PREDICTED: E3 ubiquitin-protein ligase UPL5-like [Glycine max] gi|356562613|ref|XP_003549564.1| chr4 1198249 1204150 +
2 domain predictions
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Lj4g3v0473160.1
n.a. ubiquitin-60S ribosomal protein L40 fusion protein [Puccinia graminis f]. sp. tritici CRL 75-36-700-3] gi|331229396|ref|XP_003327364.1| chr4 7196182 7198192 -
2 domain predictions
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Lj4g3v0473170.1
n.a. LOC100282068 [Zea mays] gi|226502871|ref|NP_001148453.1| chr4 7200781 7203227 -
2 domain predictions
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Lj4g3v1970880.1
n.a. CIP73 protein [Lotus japonicus] gi|294516726|gb|ADE96995.1| chr4 27346111 27356209 +
2 domain predictions
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Lj4g3v1970880.3
n.a. CIP73 protein [Lotus japonicus] gi|294516726|gb|ADE96995.1| chr4 27346306 27353638 +
2 domain predictions
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Lj5g3v0266930.1
n.a. PREDICTED: serine-rich adhesin for platelets-like isoform X1 [Cicer arietinum] gi|502126477|ref|XP_004499322.1| chr5 2204011 2214243 -
2 domain predictions
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Lj5g3v0266930.2
n.a. PREDICTED: serine-rich adhesin for platelets-like isoform X1 [Cicer arietinum] gi|502126477|ref|XP_004499322.1| chr5 2204011 2214243 -
2 domain predictions
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Lj5g3v0790850.1
n.a. Ubiquitin supergroup,Ribosomal protein L40e [Theobroma cacao] gi|508776404|gb|EOY23660.1| chr5 11384931 11386768 -
2 domain predictions
 –
Lj5g3v2060710.1
n.a. polyubiquitin 14 [Arabidopsis thaliana] gi|30679302|ref|NP_849292.1| chr5 29780747 29782887 -
2 domain predictions
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Lj6g3v0670020.1
n.a. PREDICTED: DNA damage-inducible protein 1-like [Cicer arietinum] gi|502129048|ref|XP_004500164.1| chr6 6645889 6654281 +
2 domain predictions
 –
Lj6g3v1160790.1
n.a. PREDICTED: E3 ubiquitin-protein ligase UPL5-like [Glycine max] gi|356520102|ref|XP_003528704.1| chr6 14114496 14116061 -
2 domain predictions
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Lj6g3v1754520.1
n.a. PREDICTED: E3 ubiquitin-protein ligase UPL5-like [Glycine max] gi|356562613|ref|XP_003549564.1| chr6 19845518 19848718 +
2 domain predictions
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LotjaGi1g1v0293700.1
n.a. Ubiquitin, putative; TAIR: AT2G36170.1 60S ribosomal protein L40-1; Swiss-Prot: sp|P49636|RL40_NICSY Ubiquitin-60S ribosomal protein L40; TrEMBL-Plants: tr|A0A061G1H4|A0A061G1H4_THECC Ubiquitin supergroup,Ribosomal protein L40e; Found in the gene: LotjaGi1g1v0293700 LjG1.1_chr1 71198167 71201263 +
2 domain predictions
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LotjaGi1g1v0475700_LC.1
n.a. Polyubiquitin; TAIR: AT1G65350.1 ubiquitin 13; Swiss-Prot: sp|P69315|UBIQP_LINUS Polyubiquitin; TrEMBL-Plants: tr|I3S9X0|I3S9X0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0475700_LC LjG1.1_chr1 98681909 98684448 -
2 domain predictions
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LotjaGi1g1v0674100.1
n.a. Ubiquitin, putative; TAIR: AT2G36170.1 60S ribosomal protein L40-1; Swiss-Prot: sp|P49636|RL40_NICSY Ubiquitin-60S ribosomal protein L40; TrEMBL-Plants: tr|A0A061G1H4|A0A061G1H4_THECC Ubiquitin supergroup,Ribosomal protein L40e; Found in the gene: LotjaGi1g1v0674100 LjG1.1_chr1 123997277 124000362 +
2 domain predictions
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LotjaGi2g1v0016900_LC.1
n.a. Polyubiquitin; TAIR: AT1G65350.1 ubiquitin 13; Swiss-Prot: sp|P69315|UBIQP_LINUS Polyubiquitin; TrEMBL-Plants: tr|I3S9X0|I3S9X0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0016900_LC LjG1.1_chr2 5828383 5829980 -
2 domain predictions
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LotjaGi2g1v0055200_LC.1
n.a. Polyubiquitin; TAIR: AT1G65350.1 ubiquitin 13; Swiss-Prot: sp|P69315|UBIQP_LINUS Polyubiquitin; TrEMBL-Plants: tr|I3S9X0|I3S9X0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0055200_LC LjG1.1_chr2 11032536 11034187 +
2 domain predictions
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LotjaGi2g1v0055200_LC.2
n.a. Polyubiquitin; TAIR: AT1G65350.1 ubiquitin 13; Swiss-Prot: sp|P69315|UBIQP_LINUS Polyubiquitin; TrEMBL-Plants: tr|I3S9X0|I3S9X0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0055200_LC LjG1.1_chr2 11032596 11034013 +
2 domain predictions
 –
LotjaGi2g1v0207600_LC.1
n.a. Ubiquitin; TAIR: AT1G65350.1 ubiquitin 13; Swiss-Prot: sp|P69315|UBIQP_LINUS Polyubiquitin; TrEMBL-Plants: tr|I3S9X0|I3S9X0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0207600_LC LjG1.1_chr2 65187259 65188418 -
2 domain predictions
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LotjaGi2g1v0321700.1
n.a. Ubiquitin; TAIR: AT2G47110.1 ubiquitin 6; Swiss-Prot: sp|P47905|RS27A_LUPAL Ubiquitin-40S ribosomal protein S27a; TrEMBL-Plants: tr|B7FGN8|B7FGN8_MEDTR Ubiquitin-40S ribosomal S27a-like protein; Found in the gene: LotjaGi2g1v0321700 LjG1.1_chr2 79647585 79651234 -
2 domain predictions
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LotjaGi2g1v0321700.2
n.a. Ubiquitin; TAIR: AT2G47110.1 ubiquitin 6; Swiss-Prot: sp|P47905|RS27A_LUPAL Ubiquitin-40S ribosomal protein S27a; TrEMBL-Plants: tr|B7FGN8|B7FGN8_MEDTR Ubiquitin-40S ribosomal S27a-like protein; Found in the gene: LotjaGi2g1v0321700 LjG1.1_chr2 79650360 79651086 -
2 domain predictions
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LotjaGi2g1v0355900.1
n.a. Ubiquitin-like protein; TAIR: AT2G17200.1 ubiquitin family protein; Swiss-Prot: sp|Q9SII8|DSK2B_ARATH Ubiquitin domain-containing protein DSK2b; TrEMBL-Plants: tr|A0A151THR2|A0A151THR2_CAJCA Ubiquilin-1; Found in the gene: LotjaGi2g1v0355900 LjG1.1_chr2 83199158 83205368 -
2 domain predictions
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LotjaGi2g1v0458100_LC.1
n.a. Ubiquitin, putative; TAIR: AT4G05230.1 Ubiquitin-like superfamily protein; Swiss-Prot: sp|A4QND0|UBL4A_XENTR Ubiquitin-like protein 4A; TrEMBL-Plants: tr|A0A1J7HJ92|A0A1J7HJ92_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0458100_LC LjG1.1_chr2 95177024 95177781 -
2 domain predictions
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LotjaGi3g1v0135400.1
n.a. Polyubiquitin; TAIR: AT4G05320.1 polyubiquitin 10; Swiss-Prot: sp|P0CG85|UBI1P_NICSY Polyubiquitin; TrEMBL-Plants: tr|K3YR52|K3YR52_SETIT Uncharacterized protein; Found in the gene: LotjaGi3g1v0135400 LjG1.1_chr3 17346413 17349877 -
2 domain predictions
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LotjaGi3g1v0135400.2
n.a. Polyubiquitin; TAIR: AT4G05320.1 polyubiquitin 10; Swiss-Prot: sp|P0CG85|UBI1P_NICSY Polyubiquitin; TrEMBL-Plants: tr|K3YR52|K3YR52_SETIT Uncharacterized protein; Found in the gene: LotjaGi3g1v0135400 LjG1.1_chr3 17347791 17349056 -
2 domain predictions
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LotjaGi3g1v0135400.3
n.a. Polyubiquitin; TAIR: AT4G05320.1 polyubiquitin 10; Swiss-Prot: sp|P0CG85|UBI1P_NICSY Polyubiquitin; TrEMBL-Plants: tr|K3YR52|K3YR52_SETIT Uncharacterized protein; Found in the gene: LotjaGi3g1v0135400 LjG1.1_chr3 17347791 17349356 -
2 domain predictions
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LotjaGi3g1v0135400.4
n.a. Polyubiquitin; TAIR: AT4G02890.3 Ubiquitin family protein; Swiss-Prot: sp|P0CG84|UBI4P_NICSY Polyubiquitin; TrEMBL-Plants: tr|P93501|P93501_PHAVU Ubiquitin-like protein; Found in the gene: LotjaGi3g1v0135400 LjG1.1_chr3 17347795 17348828 -
2 domain predictions
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LotjaGi3g1v0135400.5
n.a. Polyubiquitin; TAIR: AT4G05320.2 polyubiquitin 10; Swiss-Prot: sp|P0CG85|UBI1P_NICSY Polyubiquitin; TrEMBL-Plants: tr|A0A068UJB0|A0A068UJB0_COFCA Uncharacterized protein; Found in the gene: LotjaGi3g1v0135400 LjG1.1_chr3 17347911 17349056 -
2 domain predictions
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LotjaGi3g1v0135400.6
n.a. Polyubiquitin; TAIR: AT4G05320.1 polyubiquitin 10; Swiss-Prot: sp|P0CG85|UBI1P_NICSY Polyubiquitin; TrEMBL-Plants: tr|K3YR52|K3YR52_SETIT Uncharacterized protein; Found in the gene: LotjaGi3g1v0135400 LjG1.1_chr3 17347911 17349082 -
2 domain predictions
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LotjaGi3g1v0135400.7
n.a. Polyubiquitin; TAIR: AT4G05320.1 polyubiquitin 10; Swiss-Prot: sp|P0CG85|UBI1P_NICSY Polyubiquitin; TrEMBL-Plants: tr|K3YR52|K3YR52_SETIT Uncharacterized protein; Found in the gene: LotjaGi3g1v0135400 LjG1.1_chr3 17347911 17349356 -
2 domain predictions
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LotjaGi3g1v0136900.1
n.a. Ubiquitin, putative; TAIR: AT1G31340.1 related to ubiquitin 1; Swiss-Prot: sp|P0C031|RUB2_ORYSJ Ubiquitin-NEDD8-like protein RUB2; TrEMBL-Plants: tr|C6SXX2|C6SXX2_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi3g1v0136900 LjG1.1_chr3 17513681 17518640 -
2 domain predictions
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LotjaGi3g1v0147900.1
n.a. Polyubiquitin; TAIR: AT4G05320.2 polyubiquitin 10; Swiss-Prot: sp|P0CG85|UBI1P_NICSY Polyubiquitin; TrEMBL-Plants: tr|A0A0A9S1U9|A0A0A9S1U9_ARUDO Uncharacterized protein; Found in the gene: LotjaGi3g1v0147900 LjG1.1_chr3 19910002 19912564 -
2 domain predictions
 –