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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0355900 |
| Transcript ID | LotjaGi2g1v0355900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ubiquitin-like protein; TAIR: AT2G17200.1 ubiquitin family protein; Swiss-Prot: sp|Q9SII8|DSK2B_ARATH Ubiquitin domain-containing protein DSK2b; TrEMBL-Plants: tr|A0A151THR2|A0A151THR2_CAJCA Ubiquilin-1; Found in the gene: LotjaGi2g1v0355900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:83199158..83205368) extracted from Lotus japonicus Gifu genome v1.2.
TACTTATATTTATACATCCGGGCCCAGAATAACCAAAAATTAAAAAAACACACCTGTCCCATGGAAAACCTCACACGCTT TACAACGAGCGTGCATTACCAATCTCCTCCTCCAGCGTCATTCGTCGCGAGAGGATAAGGCACGCTAGTTGCCATCTTTA GTCACGCGCAGGTTAAGCACGTGGATCTAAAAGCCCAACCTCATTCCTTCCCCGCTTAGGTGGGTTTAGAAGAAGCGTAG GACCCACCCTCTCTCTCTCTCTCTTAATTTATTTTAATTTTTTTTTTTTAATTTTTCGATTGCATAAAACAACACACTCT CTCTCATTTTCTTTTCCTCTTCATTTCTCAATTTTCTCTGTTACTTCTCAAATTCCCAGCTCAAATTTTCCGATTTCGCT TCTTCTTCTTCTCCAATCGTTCTAGGGTTAGGGTTTCGATTCCTCTTCCGATTCAATCCAGTACTGTGGGACCTGATTCG TCTCCCGTGCTTGGAACCCACGACGACGCCATGGGAGGTGGTGAAGCTGCCGCTGAAGGTACCACGGAGACGAACACCAC CGACGGTGTCAACGTCAACATCAACATTCGCTGCTCCAATGGTTCCAAGTTTACCGTTCAGATTACCCTCGATTCCACCG TCGGATCCTTCAAGGAGGCGGTTGCCTCCAACTGCGACATCCCTACCGATCAGCAGCGTCTGATTTACAAGGGTCGGATC CTCAAGGATGATCAAACCCTGCAGAGCTATGGTATACCCCCGATCTCGCTGTTATTGATTTGTTTATCATGCTTTTAACG TTTATTTGTTCCCTAGAAGCGATTTTGACGTTTTTCGATTCAAGTTCTGCTCGTGTTGCTGTTCATTTTTCATGTAGCAT TTGAAAAAAAAAGCATGATTATGTGTTCTTATTTGTTCTCCGTTTGCTGATTTTGTTAGATGCAATGATGATATACATTT TCATGGTTTAATATTAACAATAATGTATGGTTAATTTGTCGATAATCTGTGAAATTTTCGACGAGAACAGCTTGAATTTG GGCAGTAAAGAGAGTTTATGTCTTGTATTTGTCTTGAGAAAAATATAACATGCGATATCATTTTTGACGCGGCTGGGATT TATTCAAATGTAAACTCTGGTGTTTTAGAGTGTATTTCCGGAATGAGTGAATATATATTTATGTTTATGCTCTTATTTAT AGGTTTGGAGGCAGACCATACTGTTCATTTGGTTCGTGGTTTTGCGGCTTCCAACGCTACTGGCGGGACTAATACTAGTG GGGCTAATACCACAACAACTAATACGAGAGGTGCTGGTGCTAATGAAGGTGGTGGGGGTTTAGGAGGGCCTGGGCTTGGA GCTTCGTTGTTCCCGGGACTAGGTGTCAATGGGATGGCAGGCAGTGGCCTTAGCGGCTTATTTGGAGCGAACCTTCCAGA TCTTGAACAAATTCAGCAGCCCTTTTTGAATAATCCCAATATGGTCAGAGAAATAATGAACACCCCGGCTATGCAGAATT TGATAAACAATCCCGAGATAGTGCGCAATCTTATAATGAATAACCCACAGATGCAAGAGCTCATGGATAGAAACCCTGAG CTGGCACACATACTTAATGATCCCAGCACACTTCGCCAGACACTTGAAGCTACAAGGAACCCTGAGATCATGCGCGAAAT GATGAGGAATACAGACAGAGCCATGAGCAACATTGAGTCTTCTCCTGAGGGATTCAACATGCTGAGGCGCATGTATGAAA ATGTTCAAGAACCATTTTTAAATGCCACTACAATGGCTGGTAATACAGGAAATGATGGTGTCAGGAATCAATCAACTAAT CCCTCAACGACTAATTCTGAAGCAACTTCCCCTGTTCCAAATACTAACCCACTTCCTAATCCTTGGTCCTCCACTGGAAG TAAGTTTTCATACCATAATTTTCTCTTCAATCCAGCAACTGAACGCCTCTTATCCTGTTAAATGTTTTAATTTATGTTTC CTTTTGATTTTTTGGTCTGTTATGAAGCTTGTAGCAACATTTTTTAGCAGCTTGTGATTAGAACTGAGCTAATTTATGTT GAACTTTTTAGCTGGAGGTGCACAAGGCAACACCAGAAGGCCAACTGCTGGTGGGGATGCTCGGCAGCAGGCACTCACTG GACTAGGAGGACTTGGTGTGCCAGATCTTGAAGGCATGATGGGTGGTATGCCAGATCCTGCTATGTTGACCCAATTAATG CAAAATCCAGCTATTTCACAAATGATGCAGAGTATCCTTTCCAATCCACAGACTATGAATCAGGTATTAGTTACTGTGCC TATGACTTGTACTTATTTTGAACTAATCGCTCTGACATCTTCTTTTCTTTTAGATTCTTGGTCTCAATACTGAGCAGCGT GGCATGCCTGATCTAAACTCACTAAGAGATGTGATGCAAAACCCAGAGTTTCTTCGCTTATTTTCCTCACCTGAGACACT GCAGGTAGACAGATTTAGAGTTCTACATTTGTTGATGAATTTGACTTAATATGCTCAATCAACTATAGTGTTGGGTACAT AGCTTTTCATGTGTAAATAAGTATGTGGTTCAATACTGAAACACTTAGTCATATGCTAATATGCATTTTGAAGAATGGTA TTTTTTATGTTTCTACAGTTATTTTCTTTTTGTTTCTTTTGTTATAACTTATAAATTCTAACAAGTGTTCAGAATTTGAA GAAATAATCATTGATGAGTATCAGACATATTTGACTGAGGGCTACGCAAATCAAATGATTGGATAATGGCCTCATGGCTA AGCATTTAGGGATTTTTTTTTGATAGACAATATTTTATTAAATTGAAGTACAAGGGGTACTTCAACCAGACTTACAAGAA AGGGAATAAAAAAGATGAATTGATCTAGCAAGTTTGCTTTTAAAGCAATCGCATCTCTGCATTTGTGGGATAATGTAGGG ATTAATTGATTTTGACATGCTGTGATTAAATTTTGACTTTTTCCAGTAGCAAGTTAGACTCTATAAAATATGAACCAATA TGATAGAGGTTGTATTGTTTTGTTTGCCTAGATAATTTAACACATTTATCATGTAATTATTCTCACAACTTTTTTTTTTG CCTCCTATTCACAATGGCAGCAACTCATGTCTTTCCAGCAATCTCTTATGTCTCAAGTTGGCCAGCAGCAACCAACACCG TAAGTAATGGGACAATCCTGGGATTCCCATTTTTACTTTCCGTTTGTTTTTCTTACATCAACGTTAAAAGAGGCAAGGAC ATTTGTTAATTCTTGCTAACTTGATTTATACTGTTATATTCCAATTCAAATGTCTTAATCCTATATCATATTGATGTACT ATGAAACATGGGTACACGAAAATTGCAGGTGTAAACGTATCAAGTGAGTGTGAGTGTAAGAAAAACTTATCTTCACCATT TAATCTCACATGGGTGATCTTGATTAATTTTGGGTAAAATCAATATTGATTATCCATGTATAATTATGTAGTCAAGATAA GCTCCTCTGGACTCTTATGCTTATATGCTATGTATGTCTCTCTGTGTGCGCGTGTGTGTTTGAATGAGTGTATTCTTTTC TGTGTGATATAGAGCATTATGACCTGACTCCAGCTAGTGGGGAAAGGTTTGTAGTTCTTGTTTCTGTGTTTTGTAATATA TTTTTCCCATCTACAAATGGGTACTGATACCAAACATGTATCCATGTTATGTGGATGCCGTTATTTTCTTTACCCTATCA CATCTTTTGCTGCTACGATCTTAGGCCTAGATAAAATCTGACCTCCTACACATGTACTTGGATGAGCTTTCTTGCATCTT CTTCTACTTGTATTTTATCTTTTCCAAAAATAATAATTGTTGTAGGCTTGTAGCTTGTTTGCTTTTGGTGGTCATGACTC ATGATTGTAGAATGCTATGCTTGAAAAACAAGATTTTGAATTTCTGTGCAATAACAATCTTTGAAAGGGGGTTTTATGAT TTGTTTATGAGTACAATTGGGGTTCAGTTCATCATTGATTCTTGAGCTACAAGCATGTAACGACTATGCATACAACACAG CCCTTTTTTTGGGGGGTGGGGGACCAAAACTGCTTGACTTGGGTGTTGAACCCTGGGTTCCTTCATTCAAATCCTGCTGG AAATCCTCTTTCAGGTTTGTGATTTGCATATTTGCACTAGGGAGTAGGGAGAGCCTTCCCCCGCACAACTTTCTTTACCA AAATAAATCTGCATTCAACGTATTATGACCTTTGAATTGGATCTTTTCATTGTGTGACTAAATGAACACACTAAGGTTTG AATTTTGATGCTCCTTTTGGGTTATATTTTGTTGCTGGCTCGATCTTCTATTAATCTGGTATGCTTTTGCAGGGGGGAAC CAGGTCAAACCGGTGGAGGCACTGGTATGCATGACAACTCTACACTCTTTCATGTATTCTGTTCATAGAACTATGCAATA TTCCCTTAGTCTGTTAGGGGTATTTTGTTGCTGTGGTTTTGTTCGGGCAATTCAAATTACTTAACCATCTCTTAAGATCA GCAATCAGTGCTGAATTAATGTGAATTATTATTTTTGAGAATATTTTTCTGCATCTCTATGTTGAAAATTTGTATGTTAA TGAAGGCTTGCTATGAGACCTTTTCTCAGTCTTTATTAGGTGGATTGTAAATCGTAGAACTGATTGGCCCTGAGGAAATC CTTTTTAACCAAATTTATGCTGGTCCAAACCAAATCCTCGCGAACCGTTTATGCATTAACTTCCTTTTGACCGGGCCCTA TGCATCTATAGAATAACACTGAAAGAGGAGGTTTTAAGTTCAAATGTTGCTGCTGAATGTTGCAATAGCCATTTGATTGC AGATGCAAAAATTATAAGCATTTTAGTAATCGCTATTGAATGTATTGCTTGTAGGATCATTGAACAACATGGGGTTGGAG ATGTTATCAAGCATGTTTGGTGGACTTGGAGCTGGTAGCTTAGCTGTTCCGAACAGATCAAATGGTTGGCATTATTATTG TTATATAATTTTCTAAATAGATCTTGAACCACATTGTTAATGTCTTCTCATACTCTGAATAAATGTCTTCTCAGAGCCAC CAGAGCAATTGTATGCCACCCAACTTTCCCAGCTTCAAGAGATGGGGTTCTTTGACACGCAAGAGAACATAAGGGCTCTT ATCGCTACGTCAGGGAATGTTCATGCAGCAGTTGAGCGGCTTTTGGGGAACACTGGACAGTAGCAGGTAATGTTAGCTGA TTTCCTTTGGTGAAGGTTCTTCCGTGGAGTGCTTAGTTAGGTTAGGTCCTTCTGAAAACTGAGTTGTTTTCGGGCGCCCT GTTTGGTGTTTCAATAAAATCAGAGATCTGTCCAGTTTTGGTCAGAACTAAGAACTGACATGGTGGTATAGTTTATACAT TGGACTGAATCTGTGATTACTCCTCCCCTTTTGAGTTTTGATGGCAAATTTATTTATTCCATGTACATGTATTAAAGCTA GTCTTCAACACCTGGCAGGAGAGCTTAAATATTATCTACAGGATCATTTTTAATACTATTAATGTATCAATATATTTTTT GGTTGTACATTTTTATTATTAATTGAATCTCCATAATTACTGATTTGGCAGGTGGCAAGGGACAAGTGACTAGCAATTTA TATCCCAAACGCTAAAATCTGGTGCGAGATGTTTATTGATTTAGCTTCGATTTTTCGTCATGGGAATTATGTTTAAATAC ATCTGTTGATTTTTTCGCAATCATATTTAGAATTTAATTTAATGGTACATCCAATACTCCAAATTATTAGTCATACATTC AACTACAAGAAAATACAAGGGCCTTTTGTACCTTCAAACATTTGCCCGTTTGCACGGATTGGCCTCATAGATACATTCAA AAGAAGAGGTTTATGTTAATTATATAATTATGAAGGCTTACTTTCTCTTTCCTTTTATCATTTGAGTTATTAATCCTGTT GCAACTTGCAAATTCGTCTGTAACAATATTAACCACTCAAATGACTAGTTTTTTATATACGAAATTCTTCACGGAGACCA TTGATGAGACCAAAATGCTGTGAATTTTGTTAGTACAGTTTTATATGGCAACTCTTTTCTAATGAATAGGGAAAACATCT AAATGAGGTCCTAGTTCAGCGTGTGGTAGCTATTAAGCTAGAACTTGCGAA
CDS sequence (LotjaGi2g1v0355900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAGGTGGTGAAGCTGCCGCTGAAGGTACCACGGAGACGAACACCACCGACGGTGTCAACGTCAACATCAACATTCG CTGCTCCAATGGTTCCAAGTTTACCGTTCAGATTACCCTCGATTCCACCGTCGGATCCTTCAAGGAGGCGGTTGCCTCCA ACTGCGACATCCCTACCGATCAGCAGCGTCTGATTTACAAGGGTCGGATCCTCAAGGATGATCAAACCCTGCAGAGCTAT GGTTTGGAGGCAGACCATACTGTTCATTTGGTTCGTGGTTTTGCGGCTTCCAACGCTACTGGCGGGACTAATACTAGTGG GGCTAATACCACAACAACTAATACGAGAGGTGCTGGTGCTAATGAAGGTGGTGGGGGTTTAGGAGGGCCTGGGCTTGGAG CTTCGTTGTTCCCGGGACTAGGTGTCAATGGGATGGCAGGCAGTGGCCTTAGCGGCTTATTTGGAGCGAACCTTCCAGAT CTTGAACAAATTCAGCAGCCCTTTTTGAATAATCCCAATATGGTCAGAGAAATAATGAACACCCCGGCTATGCAGAATTT GATAAACAATCCCGAGATAGTGCGCAATCTTATAATGAATAACCCACAGATGCAAGAGCTCATGGATAGAAACCCTGAGC TGGCACACATACTTAATGATCCCAGCACACTTCGCCAGACACTTGAAGCTACAAGGAACCCTGAGATCATGCGCGAAATG ATGAGGAATACAGACAGAGCCATGAGCAACATTGAGTCTTCTCCTGAGGGATTCAACATGCTGAGGCGCATGTATGAAAA TGTTCAAGAACCATTTTTAAATGCCACTACAATGGCTGGTAATACAGGAAATGATGGTGTCAGGAATCAATCAACTAATC CCTCAACGACTAATTCTGAAGCAACTTCCCCTGTTCCAAATACTAACCCACTTCCTAATCCTTGGTCCTCCACTGGAACT GGAGGTGCACAAGGCAACACCAGAAGGCCAACTGCTGGTGGGGATGCTCGGCAGCAGGCACTCACTGGACTAGGAGGACT TGGTGTGCCAGATCTTGAAGGCATGATGGGTGGTATGCCAGATCCTGCTATGTTGACCCAATTAATGCAAAATCCAGCTA TTTCACAAATGATGCAGAGTATCCTTTCCAATCCACAGACTATGAATCAGATTCTTGGTCTCAATACTGAGCAGCGTGGC ATGCCTGATCTAAACTCACTAAGAGATGTGATGCAAAACCCAGAGTTTCTTCGCTTATTTTCCTCACCTGAGACACTGCA GCAACTCATGTCTTTCCAGCAATCTCTTATGTCTCAAGTTGGCCAGCAGCAACCAACACCGGGGGAACCAGGTCAAACCG GTGGAGGCACTGGATCATTGAACAACATGGGGTTGGAGATGTTATCAAGCATGTTTGGTGGACTTGGAGCTGGTAGCTTA GCTGTTCCGAACAGATCAAATGAGCCACCAGAGCAATTGTATGCCACCCAACTTTCCCAGCTTCAAGAGATGGGGTTCTT TGACACGCAAGAGAACATAAGGGCTCTTATCGCTACGTCAGGGAATGTTCATGCAGCAGTTGAGCGGCTTTTGGGGAACA CTGGACAGTAG
Protein sequence (LotjaGi2g1v0355900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGGGEAAAEGTTETNTTDGVNVNINIRCSNGSKFTVQITLDSTVGSFKEAVASNCDIPTDQQRLIYKGRILKDDQTLQSY GLEADHTVHLVRGFAASNATGGTNTSGANTTTTNTRGAGANEGGGGLGGPGLGASLFPGLGVNGMAGSGLSGLFGANLPD LEQIQQPFLNNPNMVREIMNTPAMQNLINNPEIVRNLIMNNPQMQELMDRNPELAHILNDPSTLRQTLEATRNPEIMREM MRNTDRAMSNIESSPEGFNMLRRMYENVQEPFLNATTMAGNTGNDGVRNQSTNPSTTNSEATSPVPNTNPLPNPWSSTGT GGAQGNTRRPTAGGDARQQALTGLGGLGVPDLEGMMGGMPDPAMLTQLMQNPAISQMMQSILSNPQTMNQILGLNTEQRG MPDLNSLRDVMQNPEFLRLFSSPETLQQLMSFQQSLMSQVGQQQPTPGEPGQTGGGTGSLNNMGLEMLSSMFGGLGAGSL AVPNRSNEPPEQLYATQLSQLQEMGFFDTQENIRALIATSGNVHAAVERLLGNTGQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 533 | 533 | 3.1E-235 | ||
| PANTHER | 1 | 533 | 533 | 3.1E-235 | – | |
| Gene3D | 16 | 120 | 105 | 2.2E-23 | – | |
| SUPERFAMILY | 20 | 107 | 88 | 1.44E-23 | ||
| ProSiteProfiles | 22 | 91 | 70 | 21.96 | ||
| CDD | 22 | 94 | 73 | 8.02558E-38 | – | |
| SMART | 22 | 93 | 72 | 1.5E-20 | ||
| Pfam | 24 | 91 | 68 | 1.0E-21 | ||
| PRINTS | 32 | 52 | 21 | 4.9E-6 | ||
| ProSitePatterns | 48 | 73 | 26 | - | ||
| PRINTS | 53 | 73 | 21 | 4.9E-6 | ||
| PRINTS | 74 | 95 | 22 | 4.9E-6 | ||
| MobiDBLite | 100 | 119 | 20 | - | – | |
| MobiDBLite | 100 | 126 | 27 | - | – | |
| SMART | 147 | 188 | 42 | 1.3 | ||
| SMART | 201 | 240 | 40 | 1.6E-9 | ||
| MobiDBLite | 276 | 333 | 58 | - | – | |
| MobiDBLite | 276 | 343 | 68 | - | – | |
| SMART | 352 | 391 | 40 | 1.9 | ||
| SMART | 394 | 429 | 36 | 14.0 | ||
| MobiDBLite | 435 | 460 | 26 | - | – | |
| Gene3D | 476 | 536 | 61 | 9.7E-24 | – | |
| ProSiteProfiles | 488 | 533 | 46 | 12.643 | ||
| SUPERFAMILY | 490 | 532 | 43 | 2.04E-14 | ||
| Pfam | 494 | 530 | 37 | 2.1E-9 | ||
| SMART | 494 | 532 | 39 | 1.1E-6 | ||
| CDD | 494 | 532 | 39 | 1.27174E-17 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi2g1v0355900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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