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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • PTHR10666
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 113 results. Now displaying 1 of 3 with 50 rows per page. This search has taken 0.055s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0119929.1
n.a. PREDICTED: ubiquitin-NEDD8-like protein RUB2-like [Glycine max] gi|356525758|ref|XP_003531490.1| chr0 53212482 53215346 +
1 domain prediction
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Lj0g3v0120869.1
n.a. PREDICTED: ubiquitin-60S ribosomal protein L40-like [Cucumis sativus] gi|449483218|ref|XP_004156525.1| chr0 53765933 53766327 -
1 domain prediction
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Lj0g3v0175819.1
n.a. Polyubiquitin-A [Triticum urartu] gi|474093556|gb|EMS54972.1| chr0 84897532 84899697 +
1 domain prediction
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Lj0g3v0178099.1
n.a. polyubiquitin 10 [Arabidopsis thaliana] gi|240255756|ref|NP_849300.4| chr0 86267534 86269597 -
1 domain prediction
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Lj0g3v0201989.1
n.a. PREDICTED: probable phosphatidylinositol 4-kinase type 2-beta At1g26270-like [Glycine max] gi|356495721|ref|XP_003516722.1| chr0 99944694 99948327 -
1 domain prediction
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Lj0g3v0307289.1
n.a. PREDICTED: probable phosphatidylinositol 4-kinase type 2-beta At1g26270-like [Glycine max] gi|356495721|ref|XP_003516722.1| chr0 160407531 160409807 -
1 domain prediction
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Lj0g3v0316729.1
n.a. Ubiquitin [Medicago truncatula] gi|358349317|ref|XP_003638685.1| chr0 165460767 165463414 +
1 domain prediction
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Lj0g3v0316729.2
n.a. Ubiquitin [Medicago truncatula] gi|358349317|ref|XP_003638685.1| chr0 165461781 165463414 +
1 domain prediction
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Lj0g3v0328939.1
n.a. polyubiquitin, partial [Wolffia australiana] gi|374412404|gb|AEZ49160.1| chr0 171964218 171965972 -
1 domain prediction
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Lj0g3v0336829.1
n.a. PREDICTED: probable phosphatidylinositol 4-kinase type 2-beta At1g26270-like [Glycine max] gi|356495721|ref|XP_003516722.1| chr0 176423022 176423790 +
1 domain prediction
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Lj1g3v0052530.1
n.a. PREDICTED: polyubiquitin-like [Fragaria vesca subsp]. vesca] gi|470114108|ref|XP_004293259.1| chr1 511089 511580 +
1 domain prediction
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Lj1g3v0683910.1
n.a. Ubiquitin supergroup,Ribosomal protein L40e [Theobroma cacao] gi|508776404|gb|EOY23660.1| chr1 8934391 8935359 +
1 domain prediction
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Lj1g3v0984190.1
n.a. Phosphatidylinositol 4-kinase type 2-beta [Medicago truncatula] gi|357463917|ref|XP_003602240.1| chr1 12435629 12438829 -
1 domain prediction
 –
Lj1g3v1035300.1
n.a. Ubiquitin supergroup,Ribosomal protein L40e [Theobroma cacao] gi|508776404|gb|EOY23660.1| chr1 13002759 13005163 +
1 domain prediction
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Lj1g3v3729250.1
n.a. PREDICTED: BAG family molecular chaperone regulator 2-like [Cicer arietinum] gi|502091460|ref|XP_004489556.1| chr1 42935652 42936858 -
1 domain prediction
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Lj1g3v5034840.1
n.a. Ubiquitin [Medicago truncatula] gi|358349317|ref|XP_003638685.1| chr1 61553415 61556597 +
1 domain prediction
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Lj2g3v1415010.1
n.a. Ubiquitin [Medicago truncatula] gi|357519213|ref|XP_003629895.1| chr2 22244732 22245790 -
1 domain prediction
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Lj2g3v1829920.1
n.a. PREDICTED: polyubiquitin-like [Fragaria vesca subsp]. vesca] gi|470114108|ref|XP_004293259.1| chr2 27648784 27649422 +
1 domain prediction
 –
Lj2g3v2089560.1
n.a. PREDICTED: probable phosphatidylinositol 4-kinase type 2-beta At1g26270-like [Glycine max] gi|356495721|ref|XP_003516722.1| chr2 31611684 31614711 -
1 domain prediction
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Lj2g3v2197670.1
n.a. ubiquitin [Laccaria bicolor S238N]-H82] gi|170098594|ref|XP_001880516.1| chr2 32868264 32868815 -
1 domain prediction
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Lj2g3v2197670.2
n.a. ubiquitin [Laccaria bicolor S238N]-H82] gi|170098594|ref|XP_001880516.1| chr2 32868264 32868970 -
1 domain prediction
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Lj2g3v2197680.1
n.a. ubiquitin [Laccaria bicolor S238N]-H82] gi|170098594|ref|XP_001880516.1| chr2 32868264 32868706 -
1 domain prediction
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Lj3g3v0950900.1
n.a. n.a. chr3 12357900 12359259 +
1 domain prediction
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Lj3g3v0950910.1
n.a. polyubiquitin 14 [Arabidopsis thaliana] gi|30679302|ref|NP_849292.1| chr3 12358086 12360111 -
1 domain prediction
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Lj3g3v1340140.1
n.a. PREDICTED: polyubiquitin-like [Glycine max] gi|356547071|ref|XP_003541941.1| chr3 17287739 17288500 -
1 domain prediction
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Lj3g3v2027460.1
n.a. polyubiquitin 14 [Arabidopsis thaliana] gi|30679302|ref|NP_849292.1| chr3 25966680 25968751 +
1 domain prediction
 –
Lj3g3v2900800.1
n.a. Ubiquitin-like superfamily protein [Theobroma cacao] gi|508712092|gb|EOY03989.1| chr3 35949026 35951430 -
1 domain prediction
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Lj4g3v0473160.1
n.a. ubiquitin-60S ribosomal protein L40 fusion protein [Puccinia graminis f]. sp. tritici CRL 75-36-700-3] gi|331229396|ref|XP_003327364.1| chr4 7196182 7198192 -
1 domain prediction
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Lj4g3v0473170.1
n.a. LOC100282068 [Zea mays] gi|226502871|ref|NP_001148453.1| chr4 7200781 7203227 -
1 domain prediction
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Lj5g3v0790850.1
n.a. Ubiquitin supergroup,Ribosomal protein L40e [Theobroma cacao] gi|508776404|gb|EOY23660.1| chr5 11384931 11386768 -
1 domain prediction
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Lj5g3v1495690.1
n.a. PREDICTED: LOW QUALITY PROTEIN: ubiquitin-like protein-like [Cicer arietinum] gi|502086378|ref|XP_004488199.1| chr5 21688164 21690545 +
1 domain prediction
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Lj5g3v1495690.2
n.a. PREDICTED: LOW QUALITY PROTEIN: ubiquitin-like protein-like [Cicer arietinum] gi|502086378|ref|XP_004488199.1| chr5 21688164 21691755 +
1 domain prediction
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Lj5g3v2060710.1
n.a. polyubiquitin 14 [Arabidopsis thaliana] gi|30679302|ref|NP_849292.1| chr5 29780747 29782887 -
1 domain prediction
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LotjaGi1g1v0293700.1
n.a. Ubiquitin, putative; TAIR: AT2G36170.1 60S ribosomal protein L40-1; Swiss-Prot: sp|P49636|RL40_NICSY Ubiquitin-60S ribosomal protein L40; TrEMBL-Plants: tr|A0A061G1H4|A0A061G1H4_THECC Ubiquitin supergroup,Ribosomal protein L40e; Found in the gene: LotjaGi1g1v0293700 LjG1.1_chr1 71198167 71201263 +
1 domain prediction
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LotjaGi1g1v0475700_LC.1
n.a. Polyubiquitin; TAIR: AT1G65350.1 ubiquitin 13; Swiss-Prot: sp|P69315|UBIQP_LINUS Polyubiquitin; TrEMBL-Plants: tr|I3S9X0|I3S9X0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0475700_LC LjG1.1_chr1 98681909 98684448 -
1 domain prediction
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LotjaGi1g1v0674100.1
n.a. Ubiquitin, putative; TAIR: AT2G36170.1 60S ribosomal protein L40-1; Swiss-Prot: sp|P49636|RL40_NICSY Ubiquitin-60S ribosomal protein L40; TrEMBL-Plants: tr|A0A061G1H4|A0A061G1H4_THECC Ubiquitin supergroup,Ribosomal protein L40e; Found in the gene: LotjaGi1g1v0674100 LjG1.1_chr1 123997277 124000362 +
1 domain prediction
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LotjaGi2g1v0016900_LC.1
n.a. Polyubiquitin; TAIR: AT1G65350.1 ubiquitin 13; Swiss-Prot: sp|P69315|UBIQP_LINUS Polyubiquitin; TrEMBL-Plants: tr|I3S9X0|I3S9X0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0016900_LC LjG1.1_chr2 5828383 5829980 -
1 domain prediction
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LotjaGi2g1v0055200_LC.1
n.a. Polyubiquitin; TAIR: AT1G65350.1 ubiquitin 13; Swiss-Prot: sp|P69315|UBIQP_LINUS Polyubiquitin; TrEMBL-Plants: tr|I3S9X0|I3S9X0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0055200_LC LjG1.1_chr2 11032536 11034187 +
1 domain prediction
 –
LotjaGi2g1v0055200_LC.2
n.a. Polyubiquitin; TAIR: AT1G65350.1 ubiquitin 13; Swiss-Prot: sp|P69315|UBIQP_LINUS Polyubiquitin; TrEMBL-Plants: tr|I3S9X0|I3S9X0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0055200_LC LjG1.1_chr2 11032596 11034013 +
1 domain prediction
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LotjaGi2g1v0207600_LC.1
n.a. Ubiquitin; TAIR: AT1G65350.1 ubiquitin 13; Swiss-Prot: sp|P69315|UBIQP_LINUS Polyubiquitin; TrEMBL-Plants: tr|I3S9X0|I3S9X0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0207600_LC LjG1.1_chr2 65187259 65188418 -
1 domain prediction
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LotjaGi2g1v0321700.1
n.a. Ubiquitin; TAIR: AT2G47110.1 ubiquitin 6; Swiss-Prot: sp|P47905|RS27A_LUPAL Ubiquitin-40S ribosomal protein S27a; TrEMBL-Plants: tr|B7FGN8|B7FGN8_MEDTR Ubiquitin-40S ribosomal S27a-like protein; Found in the gene: LotjaGi2g1v0321700 LjG1.1_chr2 79647585 79651234 -
1 domain prediction
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LotjaGi2g1v0321700.2
n.a. Ubiquitin; TAIR: AT2G47110.1 ubiquitin 6; Swiss-Prot: sp|P47905|RS27A_LUPAL Ubiquitin-40S ribosomal protein S27a; TrEMBL-Plants: tr|B7FGN8|B7FGN8_MEDTR Ubiquitin-40S ribosomal S27a-like protein; Found in the gene: LotjaGi2g1v0321700 LjG1.1_chr2 79650360 79651086 -
1 domain prediction
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LotjaGi3g1v0135400.1
n.a. Polyubiquitin; TAIR: AT4G05320.1 polyubiquitin 10; Swiss-Prot: sp|P0CG85|UBI1P_NICSY Polyubiquitin; TrEMBL-Plants: tr|K3YR52|K3YR52_SETIT Uncharacterized protein; Found in the gene: LotjaGi3g1v0135400 LjG1.1_chr3 17346413 17349877 -
1 domain prediction
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LotjaGi3g1v0135400.2
n.a. Polyubiquitin; TAIR: AT4G05320.1 polyubiquitin 10; Swiss-Prot: sp|P0CG85|UBI1P_NICSY Polyubiquitin; TrEMBL-Plants: tr|K3YR52|K3YR52_SETIT Uncharacterized protein; Found in the gene: LotjaGi3g1v0135400 LjG1.1_chr3 17347791 17349056 -
1 domain prediction
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LotjaGi3g1v0135400.3
n.a. Polyubiquitin; TAIR: AT4G05320.1 polyubiquitin 10; Swiss-Prot: sp|P0CG85|UBI1P_NICSY Polyubiquitin; TrEMBL-Plants: tr|K3YR52|K3YR52_SETIT Uncharacterized protein; Found in the gene: LotjaGi3g1v0135400 LjG1.1_chr3 17347791 17349356 -
1 domain prediction
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LotjaGi3g1v0135400.4
n.a. Polyubiquitin; TAIR: AT4G02890.3 Ubiquitin family protein; Swiss-Prot: sp|P0CG84|UBI4P_NICSY Polyubiquitin; TrEMBL-Plants: tr|P93501|P93501_PHAVU Ubiquitin-like protein; Found in the gene: LotjaGi3g1v0135400 LjG1.1_chr3 17347795 17348828 -
1 domain prediction
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LotjaGi3g1v0135400.5
n.a. Polyubiquitin; TAIR: AT4G05320.2 polyubiquitin 10; Swiss-Prot: sp|P0CG85|UBI1P_NICSY Polyubiquitin; TrEMBL-Plants: tr|A0A068UJB0|A0A068UJB0_COFCA Uncharacterized protein; Found in the gene: LotjaGi3g1v0135400 LjG1.1_chr3 17347911 17349056 -
1 domain prediction
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LotjaGi3g1v0135400.6
n.a. Polyubiquitin; TAIR: AT4G05320.1 polyubiquitin 10; Swiss-Prot: sp|P0CG85|UBI1P_NICSY Polyubiquitin; TrEMBL-Plants: tr|K3YR52|K3YR52_SETIT Uncharacterized protein; Found in the gene: LotjaGi3g1v0135400 LjG1.1_chr3 17347911 17349082 -
1 domain prediction
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LotjaGi3g1v0135400.7
n.a. Polyubiquitin; TAIR: AT4G05320.1 polyubiquitin 10; Swiss-Prot: sp|P0CG85|UBI1P_NICSY Polyubiquitin; TrEMBL-Plants: tr|K3YR52|K3YR52_SETIT Uncharacterized protein; Found in the gene: LotjaGi3g1v0135400 LjG1.1_chr3 17347911 17349356 -
1 domain prediction
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LotjaGi3g1v0136900.1
n.a. Ubiquitin, putative; TAIR: AT1G31340.1 related to ubiquitin 1; Swiss-Prot: sp|P0C031|RUB2_ORYSJ Ubiquitin-NEDD8-like protein RUB2; TrEMBL-Plants: tr|C6SXX2|C6SXX2_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi3g1v0136900 LjG1.1_chr3 17513681 17518640 -
1 domain prediction
 –