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Lj2g3v1829920.1

Overview

Field Value
Gene ID Lj2g3v1829920
Transcript ID Lj2g3v1829920.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: polyubiquitin-like [Fragaria vesca subsp]. vesca] gi|470114108|ref|XP_004293259.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
SUPERFAMILY
SSF54236
1 86 86 4.96E-18
IPR029071
Gene3D
G3DSA:3.10.20.90
1 71 71 1.10E-17 –
ProSiteProfiles
PS50053
1 76 76 17.017
IPR000626
SMART
SM00213
1 72 72 1.50E-09
IPR000626
PANTHER
PTHR10666
1 74 74 1.20E-59 –
PANTHER
PTHR10666:SF159
1 74 74 1.20E-59 –
Pfam
PF00240
4 73 70 3.10E-15
IPR000626
CDD
cd01769
8 72 65 3.40E-11 –
ProSitePatterns
PS00299
27 52 26 –
IPR019954
SUPERFAMILY
SSF54236
103 203 101 1.15E-10
IPR029071
Gene3D
G3DSA:3.10.20.90
124 202 79 4.30E-12 –
PANTHER
PTHR10666:SF159
128 205 78 1.20E-59 –
PANTHER
PTHR10666
128 205 78 1.20E-59 –
ProSiteProfiles
PS50053
129 210 82 9.591
IPR000626
SMART
SM00213
131 206 76 5.1
IPR000626
CDD
cd00196
136 204 69 4.22E-04 –
Pfam
PF00240
138 202 65 1.10E-05
IPR000626
Coils
Coil
145 165 21 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of

Genome browser

LORE1 insertions

No LORE1 insertions have been found in the genomic region that overlaps with this gene.

Expression data

Expression pattern

Expression pattern of Lj2g3v1829920.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj2g3v1829920.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.