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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0351959 |
| Transcript ID | Lj0g3v0351959.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: lysine-specific demethylase REF6-like [Glycine max] gi|356518921|ref|XP_003528124.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 6 | 451 | 446 | 0 | – | |
| PANTHER | 6 | 451 | 446 | 0 | – | |
| SMART | 21 | 62 | 42 | 2.60E-14 | ||
| ProSiteProfiles | 22 | 63 | 42 | 14.368 | ||
| Pfam | 23 | 56 | 34 | 2.70E-13 | ||
| SMART | 182 | 351 | 170 | 1.30E-49 | ||
| ProSiteProfiles | 182 | 351 | 170 | 33.22 | ||
| SUPERFAMILY | 197 | 365 | 169 | 4.39E-25 | – | |
| Pfam | 215 | 334 | 120 | 8.70E-37 | ||
| MobiDBLite | 505 | 529 | 25 | – | – | |
| PANTHER | 539 | 637 | 99 | 0 | – | |
| PANTHER | 539 | 637 | 99 | 0 | – | |
| PANTHER | 655 | 959 | 305 | 0 | – | |
| PANTHER | 655 | 959 | 305 | 0 | – | |
| MobiDBLite | 997 | 1052 | 56 | – | – | |
| MobiDBLite | 1096 | 1121 | 26 | – | – | |
| PANTHER | 1159 | 1494 | 336 | 0 | – | |
| PANTHER | 1159 | 1494 | 336 | 0 | – | |
| MobiDBLite | 1207 | 1232 | 26 | – | – | |
| MobiDBLite | 1248 | 1331 | 84 | – | – | |
| MobiDBLite | 1355 | 1432 | 78 | – | – | |
| Gene3D | 1434 | 1463 | 30 | 3.20E-04 | ||
| SMART | 1442 | 1464 | 23 | 9.1 | ||
| SMART | 1465 | 1489 | 25 | 0.032 | ||
| ProSiteProfiles | 1465 | 1494 | 30 | 11.697 | ||
| Gene3D | 1466 | 1493 | 28 | 2.20E-04 | ||
| ProSitePatterns | 1467 | 1489 | 23 | – | ||
| Gene3D | 1494 | 1519 | 26 | 1.50E-07 | ||
| SMART | 1495 | 1519 | 25 | 0.0017 | ||
| ProSiteProfiles | 1495 | 1524 | 30 | 10.637 | ||
| ProSitePatterns | 1497 | 1519 | 23 | – | ||
| SUPERFAMILY | 1505 | 1549 | 45 | 3.73E-09 | – | |
| Gene3D | 1520 | 1548 | 29 | 3.00E-09 | ||
| PANTHER | 1520 | 1541 | 22 | 0 | – | |
| PANTHER | 1520 | 1541 | 22 | 0 | – | |
| ProSiteProfiles | 1525 | 1556 | 32 | 11.572 | ||
| SMART | 1525 | 1551 | 27 | 1.2 | ||
| ProSitePatterns | 1527 | 1551 | 25 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of Lj0g3v0351959.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0351959.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.