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Lj5g3v1265040.1

Overview

Field Value
Gene ID Lj5g3v1265040
Transcript ID Lj5g3v1265040.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: probable lysine-specific demethylase JMJ14-like [Glycine max] gi|356574834|ref|XP_003555549.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
40 86 47 – –
PANTHER
PTHR10694:SF53
99 1132 1034 0 –
PANTHER
PTHR10694
99 1132 1034 0 –
SMART
SM00545
152 193 42 1.70E-22
IPR003349
ProSiteProfiles
PS51183
153 194 42 18.054
IPR003349
Pfam
PF02375
154 187 34 2.00E-17
IPR003349
MobiDBLite
mobidb-lite
220 247 28 – –
SUPERFAMILY
SSF51197
353 554 202 8.79E-38 –
ProSiteProfiles
PS51184
364 527 164 39.104
IPR003347
SMART
SM00558
364 527 164 1.10E-66
IPR003347
Pfam
PF02373
394 510 117 1.80E-44
IPR003347
Pfam
PF02928
617 667 51 1.20E-12
IPR004198
ProSiteProfiles
PS51542
1027 1085 59 23.845
IPR003888
Pfam
PF05964
1040 1082 43 8.40E-08
IPR003888
SMART
SM00541
1041 1085 45 1.80E-14
IPR003888
ProSiteProfiles
PS51543
1087 1177 91 24.714
IPR003889
Pfam
PF05965
1090 1173 84 2.20E-20
IPR003889
SMART
SM00542
1091 1185 95 5.50E-31
IPR003889

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005634
Cellular component Nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
Subterm of

Genome browser

LORE1 insertions 12

Expression data

Expression pattern

Expression pattern of Lj5g3v1265040.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj5g3v1265040.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.