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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0107000 |
| Transcript ID | LotjaGi4g1v0107000.1 |
| Related isoforms 7 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transducin/WD40 repeat-like superfamily protein; TAIR: AT3G50590.1 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|Q96WV5|COPA_SCHPO Putative coatomer subunit alpha; TrEMBL-Plants: tr|I1K1T0|I1K1T0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0107000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:15002830..15008515) extracted from Lotus japonicus Gifu genome v1.2.
ATGCCTTATGCAGGTAATTTTCTTGCGGCATACTGGGATGTCCTAATTTTTATATCCACTATTTCCCAGGCGTGTTCTTT TGCTTCAACTACTGTACTTTTTTTTTCTCGACAATGTCCTGATTTTTTTATATGAATTTATTTGGCAGTCTTGGTTGGTT CTTTGAATGACCGGTTATTGCTGGCTAACCCTACTGAAATAAATCCCAGACAGAAAAAGGGAGTAGAGATCAAAAGCTGT CTTGTTGGTCTCCTTGAACCAATTCTTATTGGATTTGTCACAATGCAGCTAAGTTTTGAGCAGAAGCTTGATCTGTCAGA AATATTATACCAAATAACTTCGAGGTTTTCTTTTATGCCTTTGAATTTTAAACTAGTTTTAGAAAAATTCAATTTAGTTT TGTTATGTAGACCTTGCACCAAAATTTACACCATGTTTGGAAATAATCCTGGGTATTTATCAAATTGCACCTTTTGGGTA AAAGAACCACGATTTAGATTTCAAGAGCACATTTAATTTTTGGGTTATATATGTTCCAAGTCCCTGACACGGTGAAATCC AAATAGGTCCCCATAATTTTTTATTTAACTTTTGGTCCTCAACAATTTTTTGTAATTCAAATAAGGACAAGTGACATCAT GGTGCTTGCATTGCCAGTCCACGTGGACTTTTTACATACTTTTTGGTCATTCTAAAATTTCTTTATCACTTTTGGTCCTT CTCCCCCGTTCCACTTCTTCCTCTTCTCACTCAACCTCCACAACCACCACCTAGCCCCCAGTTCCCTTCCTTCTCCCTTT CCCCAGCTCGTGAACGGGAATGAATCTCGGTTGGCTTCCTGATAATAAATCCATCCTAAACCAATTTCCTGATGTCTTGG CCTGGAAAGTAATGATTGTATTGCAGAAAAAATTGTACCATAGAGAATGAGAGTAGATATCAGACAACTTGAGGGCTGTT TTATCTCTTTTTTTTCAAACTTTTCAATTGATCACACAATTTAGGGAAAGGGTAACAACGTATTTGCAAGTTCTTCAAAC ATCAGTTAGAAACTAGAATCATGTTGAAATAAGACCAAAATAAAGAAATTTCAGACATAATTTAAATGCAATATTTCAAC GGAAAGGATAAGTGACAGCACACAAGCTAAAGTTAATTAGATGGAGCATTCATTCTGCTGACAGTGATGAAAATAAGTAC TTGAAGCCAAAGCATCAGCAGACGAATCAATAATTAAAAAGAAAATAAGTGACTATAGTCAATAATGTAAACTAAATGTT ATATGTGTAATCGCTGTGTGCCATAGATTTGCTAGTTTTTGGTTCTGGGAAAGGGGGAGGGAGGGAGTTTAGGTGTGGAC TGGGTGGTGGTTGTGGAGGTTGGGTGGTGGCTGTGGAGGTTGGGTGGGAGGAGGAAGAGGAAGAGGGAGAGGAAAAAGGG GAAAGGGGATGACAAGGACCAAAAGTGATTAAAAAAAAATTTAGAATGACCAAAAGTGATGTGAAAAATCCATGTATACT GGCCCCGTACAAGCACCATAATGTCGTCCTTATTTGATTTAAAAAAAAATGCAGTCATAATTTTTTTTCTAGGGACCTAT TTGGATTTCATCCTATATGTCAGGGACTGGAACATGTTTAACCCTTAATTTTTTATTAAATTTACATTAAAGCTGATTGT CATGAGCCAATTATCCTAAAAACTTAAGATATTGGATGAAGACACATGAATAGTTCAATATTATATATCTAACACGCCTC TTACGTAAGAGTGTATTGTGCTTGAAGTGTGGACAATGCATAGACCTGCCTATCTAGGATAGAACCGATACTGTGTCATG AACCAATTATCTTAAAAGCTTAAGCTATTAGGTGAAGACACATGATTGATTTTATATCATATTTCTCATACTGATACATT GACACGTTAACTTCTTAACTGATGAAGGTTTGACAGCTTGCGCATAACACCAAGGTCTCTGGACATACTTGCTAGAGGAT CTCCGGTTTGTGGAGATTTAGCTGTGTCCTTATCACAATCAGGTCCTCATTTCACCCAGGTAAGCAGTGAAATTCTTTGT CTTGGAAATTTTGTGTTGGTCTCTCTGAACTCCTGAGCATGTTGAATATTTGATCTTCAGGTGATGCGGGGTGTTTATGC TGTGAAAGCTCTTCGTTTTTCCACTGCTTTATCTGTTTTGAAAGATGAATTTCTGCGATCTAGAGATTATCCAAGATGTC CTCCCACATCTCATTTATTTCACCGGTTCAGGCAGTTGGGTAATGCCTGTATCAGGTAAGCAATTGGCTTATGATTCTGC ATTTACTTTTGGTAATTATTGAACTATTATTGAACTATGATACATGGACAGCACACTCATTTCATAACTCTACTCTGTAT AAAATATGTTATAGCTTACACGTTTTTCCGTTCTAGGAACAATTGTCCCCCTGTATAATTAATTCTTAAAATTACTTTGA CCATTTATTTGCTTGTTTATATGCGAATAATGCTTTCCCAGTAAACTATTAGTAGTATTATTCTGTCATTGATTCTTAGC TCCACCTGTATCAATTGCGATCTATGACATGCGTGTATCTGTTACCTACAGTGTTGGAAATGATTGATGATTTACTGAGT AGTTGGTAGTGGTACTGTAGTTAATTATATAGCGTGATACACAAGTTGGCTGTTACTTCATAATGTCATGTCACTTGCAG GTTCGGTCAATTTGATAGTGCAAAAGAAACATTTGAAGTTATAGCAGACTATGAAAGCATGCTTGATCTGTTTATATGCC ACCTTAATCCCAGCGCCATGCGTCGTCTTGCTCAGAAATTGGAAGAAGAAGGTCTTGACTCAGAATTGAGGCGTTATTGT GAAAGGATATTACGAGTTCGATCTAGTGGATGGACACAGGGTATATTTGCTAACTTTGCTGCTGAGAGTATGGTTCCAAA AGGACCTGAATGGGGTGGTGGAAACTGGGAAATTAAAACCCCAACTACTGTCAAGGATATACCTAAGTGGGAGCTTGCTG CGGAAGTGACACCATACATGAAGACTGATGAGGGTACGATTCCATCCATTATTGTAGATCATATTGGTGTCTATTTAGGC TTAATTAGAGGAAGGGGCAATATTGTTGAGGTGAGGGAAGATAGCTTGGTTAAGGCCTTTATGCCAGGAGGTAACGAGAA TAAATTAAACGGTCTTGAAGCATCTTCAGTTAAATCCATATCTAATCAATCGGATGTGAATCCCAGAGGTGGTTCAATGA TGGGTCTGGAAAGCCTTAATAAACAACTTGCTAGTTCCTCTGCTGATGAGCAGGCTAAAGCAGAAGAAGAATTTAAGAAA TCCATGTATGGAGCTGCTGATGGTAGCAGCAGTGATGAAGAAGGAGTATCCAAAAAGAAAATACACATTAAAATTCGAGA CCCAATTTCCTCTTCTACTGTGGATGTAAATAAGATTAAAGAAGCCACTAGACAGCTTAAACTTGGTGAAGGGTTACCTC CTCCAACGAGGACCAGGTCGTCAATCAGTGGAAACCAGGATCTTGGCCAGATTTTGTCCCTGCCACCAGCAACTACTGGA ATGGGTTCTGCTACTGCTTCAACTCCTGCTGACCCTTTTGGTACAGACGCCTTCACTCAACCTGATTCCACTTCGCAGCC AACTATTGGGGTTGTGAGTGGGGGAGCTAAAGCAGGACCTATTCCAGAGGATTTCTTTCAGCATACAGTTTCTTCCCTTC AGGTTGCTGCATCGCTGCCTCCTGCTGGAACTTTTCTCTCAAGATTCACTCCAGGGGGTCCAATAAGCAACACAACTCCA AATCAGGTTAGCGTTTCTGAAGCTGATGTTGGGTTTCAAGGTGGTGTTCCCCCTCAAGCCATTCAACAACCTGCTGTTCC AATCGAGTCCATAGGACTTCCTGATGGTGGTGTCCCTCCGCAATCCTCAGCACAGGCTGTGGTCATGCCCCAATCTCAGT TGCAGGCTGCTCAGGCACAATTTTCTAGCCAACCTCTTGATCTTAGTGTACTTGGAGTACCAAATTCTGCTGATTCAGGG AAGCCTTCACAAAGTAGTTCTGCACCGGTTTCTGTACATCCTGGACAGGTATAAACAAAATACATGCATAGGTGTCCATA TTTGTGCTAAATGCCAACAAATTTTATTCATGTGGGGAAGAATGTGGGAAATGCAAGATTAGATGTTCTAGAATGAACTG GCATCTACAAGAAACAGAAAGGAACAATACTTTTTTTGTTTTTCCTATCATAATTTTGTGGATGCTAGAGAAATTAGTAA GTCTGCGGAGAAAAGGTTCTGATATAGCTATTGTACATATGAACAGGATAGGGATTATTAATGGCACGGCTAATGAACCT ACTGAGACACGTGTTGGTTTTTCATTATTTCCTTTCTCATGGCTTCTTATGACAGGTTCCCCGTGGGGCTGCTGCTTCTG TATGTTTCAAGATTGGACTTGCTCACCTTGAGCTAAATAATCTTTCAGATGCATTGTCTTGCTTTGATGAAGCTTTTCTT GCATTAGCTAAGGAACAATCTCGTGGAAGTGATATAAAAGCTCAAGCAACAATCTGTGCTCAATACAAATTAGCAGTCAC TCTTCTTCGGGTACTTATACCATTCTTCAGTTTTAAACTACATAGGTAGAATGGATAACTGCAGAAAAAAGATAATTAAG TTATGTACATGAGCTTTTGTTTCTCTTGACCATAAGCCTCATGTATTCGAGAAACAGAATTGAGATGTCAATATTTATTT TCAACTTGCTCCTAAGCGAGATGAGAAAACGGATGATCTCTGCTACTGTTTTCGTGCATCTGACTATATCGGAAGAAAAT GTCATTTTTATCCTTATTAATTAGGGACATTCAGGCTCTTACTTTATTTCATTTCATTTGACATATGACATTAAATTTCA ATCTGTTGACACTGGATTCTAGCTGGGGTCTAAGTTGCAAGACAGATAATAAACCATTGTCCACACTCTAATTAAGCTGA AACCATTTTTATTCATGCCTTGGTGGTTGATCAGACATGGTAAATTACATTGGAAAGTCTTATACCTCGTGGCCTAAAAC TGTTGAGTTTCCCTTTTAGACATGAATCAACGAATTTGGTTTCAGTTTTTACGTAAAATGTTGGGTGACTGGAAATTTTT CCTTCATTATTTCAGGAAATTGGACGTCTACAGAAGGTCCATGGTCCAAGTGCAATCAGTGCAAAAGATGAGATGGCGAG ACTTTCACGTCACCTCGGTTCATTGCCTCTTCTTGCTAAACACAGAATAAACTGCATTCGAACTGCCATCAAAAGAAACA TGGAGGTCCAGAATTATGCATATTCAAAGCAAATGCTAGAACTACTATTTACCAAAGCGCCTCCAAGCAAGCAAGAGGAA TTTAGAACCTTGATTGACCTGTGTGTTCAGAGGGGTTTGACTAATAAATCCATTGATCCCTTGGAAGATCCCTCACAGTT CTGTTCTGCCACTTTAAGCAGGCTTTCAACCATTGGATATGATGTCTGTGATCTCTGCGGAGCCAAATTTTCAGCAGTGA CTGCACCCGGATGCATTGTCTGTGGAATGGGTAGCATCAAAAGATCAGATGCTGTTGCAGGACCAGTTTCTTCACCGTTT GGTTGA
CDS sequence (LotjaGi4g1v0107000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCTTATGCAGTCTTGGTTGGTTCTTTGAATGACCGGTTATTGCTGGCTAACCCTACTGAAATAAATCCCAGACAGAA AAAGGGAGTAGAGATCAAAAGCTGTCTTGTTGGTCTCCTTGAACCAATTCTTATTGGATTTGTCACAATGCAGCTAAGTT TTGAGCAGAAGCTTGATCTGTCAGAAATATTATACCAAATAACTTCGAGGTTTGACAGCTTGCGCATAACACCAAGGTCT CTGGACATACTTGCTAGAGGATCTCCGGTTTGTGGAGATTTAGCTGTGTCCTTATCACAATCAGGTCCTCATTTCACCCA GGTGATGCGGGGTGTTTATGCTGTGAAAGCTCTTCGTTTTTCCACTGCTTTATCTGTTTTGAAAGATGAATTTCTGCGAT CTAGAGATTATCCAAGATGTCCTCCCACATCTCATTTATTTCACCGGTTCAGGCAGTTGGGTAATGCCTGTATCAGGTTC GGTCAATTTGATAGTGCAAAAGAAACATTTGAAGTTATAGCAGACTATGAAAGCATGCTTGATCTGTTTATATGCCACCT TAATCCCAGCGCCATGCGTCGTCTTGCTCAGAAATTGGAAGAAGAAGGTCTTGACTCAGAATTGAGGCGTTATTGTGAAA GGATATTACGAGTTCGATCTAGTGGATGGACACAGGGTATATTTGCTAACTTTGCTGCTGAGAGTATGGTTCCAAAAGGA CCTGAATGGGGTGGTGGAAACTGGGAAATTAAAACCCCAACTACTGTCAAGGATATACCTAAGTGGGAGCTTGCTGCGGA AGTGACACCATACATGAAGACTGATGAGGGTACGATTCCATCCATTATTGTAGATCATATTGGTGTCTATTTAGGCTTAA TTAGAGGAAGGGGCAATATTGTTGAGGTGAGGGAAGATAGCTTGGTTAAGGCCTTTATGCCAGGAGGTAACGAGAATAAA TTAAACGGTCTTGAAGCATCTTCAGTTAAATCCATATCTAATCAATCGGATGTGAATCCCAGAGGTGGTTCAATGATGGG TCTGGAAAGCCTTAATAAACAACTTGCTAGTTCCTCTGCTGATGAGCAGGCTAAAGCAGAAGAAGAATTTAAGAAATCCA TGTATGGAGCTGCTGATGGTAGCAGCAGTGATGAAGAAGGAGTATCCAAAAAGAAAATACACATTAAAATTCGAGACCCA ATTTCCTCTTCTACTGTGGATGTAAATAAGATTAAAGAAGCCACTAGACAGCTTAAACTTGGTGAAGGGTTACCTCCTCC AACGAGGACCAGGTCGTCAATCAGTGGAAACCAGGATCTTGGCCAGATTTTGTCCCTGCCACCAGCAACTACTGGAATGG GTTCTGCTACTGCTTCAACTCCTGCTGACCCTTTTGGTACAGACGCCTTCACTCAACCTGATTCCACTTCGCAGCCAACT ATTGGGGTTGTGAGTGGGGGAGCTAAAGCAGGACCTATTCCAGAGGATTTCTTTCAGCATACAGTTTCTTCCCTTCAGGT TGCTGCATCGCTGCCTCCTGCTGGAACTTTTCTCTCAAGATTCACTCCAGGGGGTCCAATAAGCAACACAACTCCAAATC AGGTTAGCGTTTCTGAAGCTGATGTTGGGTTTCAAGGTGGTGTTCCCCCTCAAGCCATTCAACAACCTGCTGTTCCAATC GAGTCCATAGGACTTCCTGATGGTGGTGTCCCTCCGCAATCCTCAGCACAGGCTGTGGTCATGCCCCAATCTCAGTTGCA GGCTGCTCAGGCACAATTTTCTAGCCAACCTCTTGATCTTAGTGTACTTGGAGTACCAAATTCTGCTGATTCAGGGAAGC CTTCACAAAGTAGTTCTGCACCGGTTTCTGTACATCCTGGACAGGTTCCCCGTGGGGCTGCTGCTTCTGTATGTTTCAAG ATTGGACTTGCTCACCTTGAGCTAAATAATCTTTCAGATGCATTGTCTTGCTTTGATGAAGCTTTTCTTGCATTAGCTAA GGAACAATCTCGTGGAAGTGATATAAAAGCTCAAGCAACAATCTGTGCTCAATACAAATTAGCAGTCACTCTTCTTCGGG AAATTGGACGTCTACAGAAGGTCCATGGTCCAAGTGCAATCAGTGCAAAAGATGAGATGGCGAGACTTTCACGTCACCTC GGTTCATTGCCTCTTCTTGCTAAACACAGAATAAACTGCATTCGAACTGCCATCAAAAGAAACATGGAGGTCCAGAATTA TGCATATTCAAAGCAAATGCTAGAACTACTATTTACCAAAGCGCCTCCAAGCAAGCAAGAGGAATTTAGAACCTTGATTG ACCTGTGTGTTCAGAGGGGTTTGACTAATAAATCCATTGATCCCTTGGAAGATCCCTCACAGTTCTGTTCTGCCACTTTA AGCAGGCTTTCAACCATTGGATATGATGTCTGTGATCTCTGCGGAGCCAAATTTTCAGCAGTGACTGCACCCGGATGCAT TGTCTGTGGAATGGGTAGCATCAAAAGATCAGATGCTGTTGCAGGACCAGTTTCTTCACCGTTTGGTTGA
Protein sequence (LotjaGi4g1v0107000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPYAVLVGSLNDRLLLANPTEINPRQKKGVEIKSCLVGLLEPILIGFVTMQLSFEQKLDLSEILYQITSRFDSLRITPRS LDILARGSPVCGDLAVSLSQSGPHFTQVMRGVYAVKALRFSTALSVLKDEFLRSRDYPRCPPTSHLFHRFRQLGNACIRF GQFDSAKETFEVIADYESMLDLFICHLNPSAMRRLAQKLEEEGLDSELRRYCERILRVRSSGWTQGIFANFAAESMVPKG PEWGGGNWEIKTPTTVKDIPKWELAAEVTPYMKTDEGTIPSIIVDHIGVYLGLIRGRGNIVEVREDSLVKAFMPGGNENK LNGLEASSVKSISNQSDVNPRGGSMMGLESLNKQLASSSADEQAKAEEEFKKSMYGAADGSSSDEEGVSKKKIHIKIRDP ISSSTVDVNKIKEATRQLKLGEGLPPPTRTRSSISGNQDLGQILSLPPATTGMGSATASTPADPFGTDAFTQPDSTSQPT IGVVSGGAKAGPIPEDFFQHTVSSLQVAASLPPAGTFLSRFTPGGPISNTTPNQVSVSEADVGFQGGVPPQAIQQPAVPI ESIGLPDGGVPPQSSAQAVVMPQSQLQAAQAQFSSQPLDLSVLGVPNSADSGKPSQSSSAPVSVHPGQVPRGAAASVCFK IGLAHLELNNLSDALSCFDEAFLALAKEQSRGSDIKAQATICAQYKLAVTLLREIGRLQKVHGPSAISAKDEMARLSRHL GSLPLLAKHRINCIRTAIKRNMEVQNYAYSKQMLELLFTKAPPSKQEEFRTLIDLCVQRGLTNKSIDPLEDPSQFCSATL SRLSTIGYDVCDLCGAKFSAVTAPGCIVCGMGSIKRSDAVAGPVSSPFG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 849 | 849 | 0.0 | – | |
| PANTHER | 1 | 849 | 849 | 0.0 | – | |
| MobiDBLite | 417 | 488 | 72 | - | – | |
| MobiDBLite | 428 | 483 | 56 | - | – | |
| MobiDBLite | 604 | 627 | 24 | - | – | |
| MobiDBLite | 604 | 624 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0107000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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