Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0226200 |
| Transcript ID | LotjaGi4g1v0226200.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | WD40 repeat-like protein; TAIR: AT5G50230.1 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|Q6NNP0|ATG16_ARATH Autophagy-related protein 16; TrEMBL-Plants: tr|A0A1J7HIL9|A0A1J7HIL9_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0226200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:53556755..53559215) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCGACAGTTTGCAAGTCGCAAGAAGAAATCGCCCAAAAAGCTATCAATCATGCTTTGAAGTCTCTGCGGAAGCGCCA TTTGCTCGAAGAAGCTGCTCATGCTCCTGCTTTTCTCGCACTTTCTAGACCCATTGTTTCCCAGGTTCATATACCATAGT AGAAACAAACAAAATTCAAGCTTTTCAGTGATTATCTTATTTGTCCCAATGAAAAAGTCCAATTATTCTTGTTCTTTTTG TTCAATCATGCTCCAATAGAATAGTGCTTGTGAAAACAATTTTACCCATTTTCCCAGTTATGCAAAGTTACTGCCTTTTG ATTATGGGTGCATTGTCACAGTCTTGATAATATGAGGGATTTGGGTGGGGGTATTTATCAGTATTTGTTGTTTCTTGACA TGGGTATTTGCTTATTGGATCATGGTCGATGTTTCGCAATTGGAATGTTTTATTGAGTGAAGTATTGTGTGTGTGTGTTC CTTGAAGGGCTCTGAGTGGAAAGAGAAAGCAGAGAACTTGCAAGTGGAACTTCAGCAATGCTATAAAGCTCAATCTCGGT TGTCTGAGCAACTTGTTGTGGAAGTAGCTGATTCCAGAGCTTCAAAAGCTTTGGTTCAGGAGAAAGACAATGCAATTGCT GATCTGCAGAAGGAGTTAACCGAAATGAGGTTGATTCATATTTCTTCTGTGTTGTAACAACCGCAACACTTTGTTTTTTG TTTTTGTTTTAAGTTTGTGATTATTTTCTCAGCTTTAATTGATGTTGCAGGGATGAGTTCTCTCAATTAAAGGTGGACTT GGAACAAAAGATCAAAGAGCTAGAAGTGATTGTGAGTGAGAATTCAGAACTTAAAGCACAACTGGAGCAGATGACTGCCC AATGTAAGAAAGCTGAAGCTGAAAATAAGATGTTGATTGACCGCTGGATGTTGGAAAAGATGAAGGATGCTGAGCGCCTA AATGAGGTACAGTATCTTTTGTACTGGTGCATACTCTCTGTAAGAATGGATTTGGCTTCAGCAAGTGATGCAATGTTGAT GATCATAATACTCTTAGTATATGTAAATTTCTTAGGCTATTTGTTCTATTCGAAGTTTAGAACTAAGTTCAGCTGCTGCT TACATGCATCTGATGGCTTGAAACTTTTGTGGTATATGACATTTACCTTGTTGAGCCATTTTACACCAACATTGCATGTA CTTCTGAACTTATCTGTTCATAGTTTGAAAATTGAACCTTATTGGTTAATAGTTTTTCACTTGTTCTACTATAAAGTCAG TGCATGATGGGAGTGAACTTTTGTGATAGTTACGCCAGTAGTTTATTATGTGTACGTATAGAATCCTAACTAAATTGTGA TGTTACCGGTGACATCTTATTTCTAACTGCTTCCTTTTGCTGCTGATTCTTCTAATAATTTAGTTTGTATCCTTTTAGGC AAATGCCCTGTATGAAGAGATGGTTGAGCGGCTAAGAGCCAGTGGCTTAGAACAACTAGCAAGGCAGCAGGTGGATGGCG TAGTTCGGCGATGTGAAGAAGGTGCTGAATTCTTTTTGGATTCCAACATCCCTTCCACTTGCAAGTTCAGGTTAAATGCA CATGAAGGGGGTTGTGCTTCCATATTGTTTGAGTTCAACTCTAGTAGATTAATTACAGGGGGACAGGACCAGTCAGTTAA AGTGTGGGATACTAATACAGGATCTGTATGTTCTAATCTTCATGGCTGCATTGGCTCAGTATTGGATCTCACGATCACCC ATGATAATCGTTCTGTCATTGCTGCAAGCAGTTCAAACAACTTGTATGTTTGGGATCTCAACTCAGGCAGGGTCCGTCAT ACCCTCACCGGGCACAAAGATAAAGTTTGTGCTGTTGATGTCAGCAAGGTTTCCAGTCGTCATGTGGTCAGTGCAGCTTA CGATCGTACTATAAAAGTTTGGGACCTAATGAAAGGTTACTGCACAAACACAATCATTTTTGCCAGCAACTGCAATGCAC TTTGCTTCAGCATGGATGGACAGACCATATATTCTGGACACGTTGATGGCAACCTTCGGTTATGGGACATTCAGAGTGGA AAGCTACTAAGTGAGGTTGCTGCACATTCACTTGCTGTCACATCAATTTCCCTTTCTCGAAACGGAAATGTTGTACTGAC GAGTGGAAGGGACAATGTGCACAATTTGTTTGATGTGCGATCTCTGGAAGTTTGCAGTTCATTTAGAGACACAGGAAACA GAGTGGCTTCTAATTGGAGTCGCTCCTGTATTAGTCCCGACAACAGTCATGTTGCTGCTGGGTCTGCTGATGGATCTGTT CATATTTGGTCAGTACATAAAAATGAAATTGTCAGTACTCTGAAGGAACATACGTCCTCTGTTCTTTGTTGCAGATGGAG TGGGATTGGAAAACCGTTAGCTTCAGCTGACAAGAATGGGATTGTCTGCATCTGGAAGTAA
CDS sequence (LotjaGi4g1v0226200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGACAGTTTGCAAGTCGCAAGAAGAAATCGCCCAAAAAGCTATCAATCATGCTTTGAAGTCTCTGCGGAAGCGCCA TTTGCTCGAAGAAGCTGCTCATGCTCCTGCTTTTCTCGCACTTTCTAGACCCATTGTTTCCCAGGGCTCTGAGTGGAAAG AGAAAGCAGAGAACTTGCAAGTGGAACTTCAGCAATGCTATAAAGCTCAATCTCGGTTGTCTGAGCAACTTGTTGTGGAA GTAGCTGATTCCAGAGCTTCAAAAGCTTTGGTTCAGGAGAAAGACAATGCAATTGCTGATCTGCAGAAGGAGTTAACCGA AATGAGGGATGAGTTCTCTCAATTAAAGGTGGACTTGGAACAAAAGATCAAAGAGCTAGAAGTGATTGTGAGTGAGAATT CAGAACTTAAAGCACAACTGGAGCAGATGACTGCCCAATGTAAGAAAGCTGAAGCTGAAAATAAGATGTTGATTGACCGC TGGATGTTGGAAAAGATGAAGGATGCTGAGCGCCTAAATGAGGCAAATGCCCTGTATGAAGAGATGGTTGAGCGGCTAAG AGCCAGTGGCTTAGAACAACTAGCAAGGCAGCAGGTGGATGGCGTAGTTCGGCGATGTGAAGAAGGTGCTGAATTCTTTT TGGATTCCAACATCCCTTCCACTTGCAAGTTCAGGTTAAATGCACATGAAGGGGGTTGTGCTTCCATATTGTTTGAGTTC AACTCTAGTAGATTAATTACAGGGGGACAGGACCAGTCAGTTAAAGTGTGGGATACTAATACAGGATCTGTATGTTCTAA TCTTCATGGCTGCATTGGCTCAGTATTGGATCTCACGATCACCCATGATAATCGTTCTGTCATTGCTGCAAGCAGTTCAA ACAACTTGTATGTTTGGGATCTCAACTCAGGCAGGGTCCGTCATACCCTCACCGGGCACAAAGATAAAGTTTGTGCTGTT GATGTCAGCAAGGTTTCCAGTCGTCATGTGGTCAGTGCAGCTTACGATCGTACTATAAAAGTTTGGGACCTAATGAAAGG TTACTGCACAAACACAATCATTTTTGCCAGCAACTGCAATGCACTTTGCTTCAGCATGGATGGACAGACCATATATTCTG GACACGTTGATGGCAACCTTCGGTTATGGGACATTCAGAGTGGAAAGCTACTAAGTGAGGTTGCTGCACATTCACTTGCT GTCACATCAATTTCCCTTTCTCGAAACGGAAATGTTGTACTGACGAGTGGAAGGGACAATGTGCACAATTTGTTTGATGT GCGATCTCTGGAAGTTTGCAGTTCATTTAGAGACACAGGAAACAGAGTGGCTTCTAATTGGAGTCGCTCCTGTATTAGTC CCGACAACAGTCATGTTGCTGCTGGGTCTGCTGATGGATCTGTTCATATTTGGTCAGTACATAAAAATGAAATTGTCAGT ACTCTGAAGGAACATACGTCCTCTGTTCTTTGTTGCAGATGGAGTGGGATTGGAAAACCGTTAGCTTCAGCTGACAAGAA TGGGATTGTCTGCATCTGGAAGTAA
Protein sequence (LotjaGi4g1v0226200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MATVCKSQEEIAQKAINHALKSLRKRHLLEEAAHAPAFLALSRPIVSQGSEWKEKAENLQVELQQCYKAQSRLSEQLVVE VADSRASKALVQEKDNAIADLQKELTEMRDEFSQLKVDLEQKIKELEVIVSENSELKAQLEQMTAQCKKAEAENKMLIDR WMLEKMKDAERLNEANALYEEMVERLRASGLEQLARQQVDGVVRRCEEGAEFFLDSNIPSTCKFRLNAHEGGCASILFEF NSSRLITGGQDQSVKVWDTNTGSVCSNLHGCIGSVLDLTITHDNRSVIAASSSNNLYVWDLNSGRVRHTLTGHKDKVCAV DVSKVSSRHVVSAAYDRTIKVWDLMKGYCTNTIIFASNCNALCFSMDGQTIYSGHVDGNLRLWDIQSGKLLSEVAAHSLA VTSISLSRNGNVVLTSGRDNVHNLFDVRSLEVCSSFRDTGNRVASNWSRSCISPDNSHVAAGSADGSVHIWSVHKNEIVS TLKEHTSSVLCCRWSGIGKPLASADKNGIVCIWK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 6 | 514 | 509 | 4.9E-176 | – | |
| PANTHER | 6 | 514 | 509 | 4.9E-176 | – | |
| Pfam | 49 | 173 | 125 | 4.7E-14 | ||
| Coils | 91 | 160 | 70 | - | – | |
| Coils | 169 | 189 | 21 | - | – | |
| SUPERFAMILY | 218 | 514 | 297 | 4.58E-70 | ||
| SMART | 219 | 258 | 40 | 1.1E-5 | ||
| Pfam | 222 | 258 | 37 | 0.0069 | ||
| CDD | 222 | 514 | 293 | 2.56191E-61 | – | |
| ProSiteProfiles | 226 | 267 | 42 | 13.516 | ||
| ProSiteProfiles | 226 | 514 | 289 | 50.12 | ||
| PRINTS | 245 | 259 | 15 | 1.8E-7 | ||
| ProSitePatterns | 245 | 259 | 15 | - | ||
| SMART | 261 | 300 | 40 | 0.15 | ||
| ProSiteProfiles | 268 | 309 | 42 | 9.706 | ||
| SMART | 303 | 343 | 41 | 1.3E-8 | ||
| Pfam | 306 | 343 | 38 | 3.5E-5 | ||
| ProSiteProfiles | 310 | 352 | 43 | 12.814 | ||
| PRINTS | 330 | 344 | 15 | 1.8E-7 | ||
| ProSitePatterns | 330 | 344 | 15 | - | ||
| SMART | 346 | 384 | 39 | 2.3E-4 | ||
| Gene3D | 354 | 447 | 94 | 2.5E-17 | ||
| Pfam | 358 | 405 | 48 | 1.7E-4 | ||
| ProSiteProfiles | 361 | 393 | 33 | 10.943 | ||
| ProSitePatterns | 371 | 385 | 15 | - | ||
| PRINTS | 371 | 385 | 15 | 1.8E-7 | ||
| SMART | 387 | 426 | 40 | 0.0049 | ||
| ProSiteProfiles | 394 | 435 | 42 | 9.539 | ||
| SMART | 429 | 472 | 44 | 0.39 | ||
| Gene3D | 448 | 514 | 67 | 5.0E-16 | ||
| Pfam | 451 | 472 | 22 | 0.014 | ||
| ProSiteProfiles | 453 | 481 | 29 | 10.542 | ||
| SMART | 475 | 514 | 40 | 3.2E-6 | ||
| Pfam | 478 | 514 | 37 | 0.026 | ||
| ProSiteProfiles | 482 | 514 | 33 | 10.041 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi4g1v0226200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…