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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • PTHR22884
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 64 results. Now displaying 1 of 2 with 50 rows per page. This search has taken 0.046s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0007239.1
n.a. PREDICTED: probable histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH9-like [Cicer arietinum] gi|502154147|ref|XP_004509600.1| chr0 2811159 2819313 -
1 domain prediction
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Lj0g3v0102529.1
n.a. PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH6-like [Glycine max] gi|356497095|ref|XP_003517399.1| chr0 43660245 43661570 +
1 domain prediction
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Lj0g3v0127099.1
n.a. PREDICTED: zinc finger CCCH domain-containing protein 44-like [Glycine max] gi|356495372|ref|XP_003516552.1| chr0 57280917 57289518 -
1 domain prediction
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Lj0g3v0127099.2
n.a. PREDICTED: zinc finger CCCH domain-containing protein 44-like [Cicer arietinum] gi|502161282|ref|XP_004512106.1| chr0 57280917 57289518 -
1 domain prediction
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Lj0g3v0128679.1
n.a. PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1-like [Glycine max] gi|356508242|ref|XP_003522868.1| chr0 58166236 58169952 +
1 domain prediction
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Lj0g3v0172449.1
n.a. PREDICTED: histone-lysine N-methyltransferase SUVR3-like [Glycine max] gi|356574501|ref|XP_003555385.1| chr0 82853035 82858979 -
1 domain prediction
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Lj0g3v0213049.1
n.a. PREDICTED: histone-lysine N-methyltransferase EZA1-like [Glycine max] gi|356501867|ref|XP_003519745.1| chr0 107517024 107521993 +
1 domain prediction
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Lj0g3v0223599.1
n.a. PREDICTED: histone-lysine N-methyltransferase SUVR4-like [Glycine max] gi|356533657|ref|XP_003535377.1| chr0 115335715 115348025 -
1 domain prediction
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Lj0g3v0223599.2
n.a. PREDICTED: histone-lysine N-methyltransferase SUVR4-like [Glycine max] gi|356533657|ref|XP_003535377.1| chr0 115335715 115344565 -
1 domain prediction
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Lj0g3v0223599.4
n.a. PREDICTED: histone-lysine N-methyltransferase SUVR2-like [Glycine max] gi|356574896|ref|XP_003555579.1| chr0 115335715 115342975 -
1 domain prediction
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Lj0g3v0241779.1
n.a. ASH1-like protein [Phaseolus vulgaris] gi|342209884|gb|AEL16989.1| chr0 125480301 125486508 -
1 domain prediction
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Lj0g3v0265609.1
n.a. Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4 [Medicago truncatula] gi|357505017|ref|XP_003622797.1| chr0 137616300 137624390 +
1 domain prediction
 –
Lj0g3v0266169.1
n.a. PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1-like [Glycine max] gi|356546288|ref|XP_003541561.1| chr0 137822125 137828672 +
1 domain prediction
 –
Lj0g3v0269559.1
n.a. PREDICTED: probable histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH9-like [Cicer arietinum] gi|502154147|ref|XP_004509600.1| chr0 139649442 139651574 -
1 domain prediction
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Lj0g3v0293009.1
n.a. PREDICTED: probable histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH9-like isoform X1 [Cicer arietinum] gi|502123658|ref|XP_004498209.1| chr0 152088549 152092608 +
1 domain prediction
 –
Lj0g3v0309989.1
n.a. PREDICTED: histone-lysine N-methyltransferase SUVR5-like [Glycine max] gi|356561269|ref|XP_003548905.1| chr0 161816987 161826481 -
1 domain prediction
 –
Lj0g3v0325949.1
n.a. PREDICTED: histone-lysine N-methyltransferase SUVR1-like [Glycine max] gi|356536852|ref|XP_003536947.1| chr0 170351302 170359067 +
1 domain prediction
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Lj0g3v0328909.1
n.a. PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH5-like [Glycine max] gi|356577497|ref|XP_003556861.1| chr0 171938958 171939713 -
1 domain prediction
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Lj0g3v0335379.1
n.a. PREDICTED: zinc finger CCCH domain-containing protein 44-like isoform X2 [Cicer arietinum] gi|502161278|ref|XP_004512104.1| chr0 175643447 175647690 +
1 domain prediction
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Lj0g3v0357229.1
n.a. PREDICTED: zinc finger CCCH domain-containing protein 44-like isoform X2 [Cicer arietinum] gi|502161278|ref|XP_004512104.1| chr0 188090997 188093580 +
1 domain prediction
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Lj1g3v0887590.1
n.a. PREDICTED: histone-lysine N-methyltransferase ASHH2-like [Glycine max] gi|356507632|ref|XP_003522568.1| chr1 11315183 11328722 +
1 domain prediction
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Lj1g3v0887590.2
n.a. PREDICTED: histone-lysine N-methyltransferase ASHH2-like [Glycine max] gi|356507632|ref|XP_003522568.1| chr1 11316000 11328722 +
1 domain prediction
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Lj1g3v2883830.1
n.a. enhanced downy mildew 2 [Arabidopsis thaliana] gi|145359280|ref|NP_200350.2| chr1 32505957 32510453 -
1 domain prediction
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Lj1g3v2883830.2
n.a. enhanced downy mildew 2 [Arabidopsis thaliana] gi|145359280|ref|NP_200350.2| chr1 32505957 32510453 -
1 domain prediction
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Lj1g3v3357590.1
n.a. Flavonol synthase/flavanone 3-hydroxylase [Medicago truncatula] gi|357467443|ref|XP_003604006.1| chr1 38579182 38590942 -
1 domain prediction
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Lj1g3v3357590.2
n.a. Flavonol synthase/flavanone 3-hydroxylase [Medicago truncatula] gi|357467443|ref|XP_003604006.1| chr1 38579182 38590892 -
1 domain prediction
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Lj1g3v3904410.1
n.a. PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4-like [Glycine max] gi|356560426|ref|XP_003548493.1| chr1 45483181 45490448 -
1 domain prediction
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Lj1g3v4059050.1
n.a. PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1-like [Glycine max] gi|356504621|ref|XP_003521094.1| chr1 48012042 48015981 +
1 domain prediction
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Lj1g3v4516130.1
n.a. PREDICTED: histone-lysine N-methyltransferase SUVR4-like isoform X1 [Cicer arietinum] gi|502110178|ref|XP_004493818.1| chr1 53212741 53221564 -
1 domain prediction
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Lj2g3v0523280.1
n.a. PREDICTED: histone-lysine N-methyltransferase ASHH3-like [Glycine max] gi|356530969|ref|XP_003534051.1| chr2 6971562 6982866 +
1 domain prediction
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Lj2g3v1436870.1
n.a. PREDICTED: histone-lysine N-methyltransferase SUVR3-like [Glycine max] gi|356574501|ref|XP_003555385.1| chr2 22591815 22593968 +
1 domain prediction
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Lj2g3v1828500.1
n.a. PREDICTED: histone-lysine N-methyltransferase SUVR5-like [Glycine max] gi|356540712|ref|XP_003538829.1| chr2 27479378 27489366 -
1 domain prediction
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Lj2g3v1890940.1
n.a. PREDICTED: histone-lysine N-methyltransferase CLF-like [Glycine max] gi|356540672|ref|XP_003538810.1| chr2 28108109 28115555 -
1 domain prediction
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Lj2g3v1890940.2
n.a. PREDICTED: histone-lysine N-methyltransferase CLF-like [Glycine max] gi|356540672|ref|XP_003538810.1| chr2 28108109 28116261 -
1 domain prediction
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Lj2g3v1989010.1
n.a. PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH6-like [Cicer arietinum] gi|502160414|ref|XP_004511737.1| chr2 29682391 29694387 -
1 domain prediction
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Lj2g3v1989020.1
n.a. PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH6-like [Cicer arietinum] gi|502160414|ref|XP_004511737.1| chr2 29696910 29699948 -
1 domain prediction
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Lj2g3v1989030.1
n.a. PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH6-like [Cicer arietinum] gi|502160414|ref|XP_004511737.1| chr2 29702847 29705210 -
1 domain prediction
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Lj2g3v2985910.1
n.a. PREDICTED: probable histone-lysine N-methyltransferase ATXR3-like isoform X1 [Cicer arietinum] gi|502083114|ref|XP_004487363.1| chr2 38494936 38513224 -
1 domain prediction
 –
Lj2g3v2985910.2
n.a. PREDICTED: probable histone-lysine N-methyltransferase ATXR3-like isoform X1 [Cicer arietinum] gi|502083114|ref|XP_004487363.1| chr2 38494936 38513224 -
1 domain prediction
 –
Lj2g3v2985910.3
n.a. PREDICTED: probable histone-lysine N-methyltransferase ATXR3-like isoform X1 [Cicer arietinum] gi|502083114|ref|XP_004487363.1| chr2 38494936 38513224 -
1 domain prediction
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Lj2g3v3224280.2
n.a. enhanced downy mildew 2 [Arabidopsis thaliana] gi|145359280|ref|NP_200350.2| chr2 41248421 41253345 -
1 domain prediction
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Lj3g3v0075610.1
n.a. PREDICTED: histone-lysine N-methyltransferase SUVR5-like [Glycine max] gi|356561269|ref|XP_003548905.1| chr3 684782 697632 -
1 domain prediction
 –
Lj3g3v0075610.2
n.a. PREDICTED: histone-lysine N-methyltransferase SUVR5-like [Glycine max] gi|356561269|ref|XP_003548905.1| chr3 684782 691553 -
1 domain prediction
 –
Lj3g3v2888370.1
n.a. PREDICTED: probable histone-lysine N-methyltransferase ATXR3-like [Cicer arietinum] gi|502165361|ref|XP_004513544.1| chr3 35740235 35756259 -
1 domain prediction
 –
Lj3g3v2888370.2
n.a. PREDICTED: probable histone-lysine N-methyltransferase ATXR3-like [Cicer arietinum] gi|502165361|ref|XP_004513544.1| chr3 35742346 35753291 -
1 domain prediction
 –
Lj4g3v0901350.1
n.a. PREDICTED: histone-lysine N-methyltransferase SUVR5-like [Glycine max] gi|356561269|ref|XP_003548905.1| chr4 13447006 13452542 +
1 domain prediction
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Lj5g3v0528960.1
n.a. Uncharacterized protein isoform 3 [Theobroma cacao] gi|508782146|gb|EOY29402.1| chr5 5835200 5847660 -
1 domain prediction
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Lj5g3v0528960.2
n.a. Uncharacterized protein isoform 1 [Theobroma cacao] gi|508782144|gb|EOY29400.1| chr5 5835200 5847610 -
1 domain prediction
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Lj5g3v1598420.1
n.a. PREDICTED: histone-lysine N-methyltransferase EZA1-like [Glycine max] gi|356534774|ref|XP_003535927.1| chr5 22988168 22997688 +
1 domain prediction
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Lj5g3v1598420.2
n.a. PREDICTED: histone-lysine N-methyltransferase EZA1-like [Glycine max] gi|356534774|ref|XP_003535927.1| chr5 22988168 22999368 +
1 domain prediction
 –