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Lj2g3v1890940.1

Overview

Field Value
Gene ID Lj2g3v1890940
Transcript ID Lj2g3v1890940.1
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: histone-lysine N-methyltransferase CLF-like [Glycine max] gi|356540672|ref|XP_003538810.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
ProSiteProfiles
PS51576
19 842 824 280.798
IPR025778
PANTHER
PTHR22884
19 24 6 7.20E-134 –
PANTHER
PTHR22884:SF237
19 24 6 7.20E-134 –
Coils
Coil
174 194 21 – –
PANTHER
PTHR22884
258 303 46 7.20E-134 –
PANTHER
PTHR22884:SF237
258 303 46 7.20E-134 –
MobiDBLite
mobidb-lite
328 443 116 – –
PANTHER
PTHR22884
452 519 68 7.20E-134 –
PANTHER
PTHR22884:SF237
452 519 68 7.20E-134 –
PANTHER
PTHR22884:SF237
543 818 276 7.20E-134 –
PANTHER
PTHR22884
543 818 276 7.20E-134 –
SUPERFAMILY
SSF82199
567 813 247 2.40E-49 –
Gene3D
G3DSA:2.170.270.10
574 820 247 6.20E-56 –
ProSiteProfiles
PS51633
579 678 100 23.622
IPR026489
SMART
SM01114
627 664 38 3.00E-09
IPR033467
SMART
SM00317
693 814 122 7.70E-30
IPR001214
ProSiteProfiles
PS50280
693 808 116 12.891
IPR001214
Pfam
PF00856
704 807 104 5.10E-09
IPR001214
MobiDBLite
mobidb-lite
816 842 27 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of
GO:0031519
Cellular component PcG protein complex A chromatin-associated multiprotein complex containing Polycomb Group proteins. In Drosophila, Polycomb group proteins are involved in the long-term maintenance of gene repression, and PcG protein complexes associate with Polycomb group response elements (PREs) in target genes to regulate higher-order chromatin structure.
Subterm of

Genome browser

LORE1 insertions 9

Expression data

Expression pattern

Expression pattern of Lj2g3v1890940.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj2g3v1890940.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.