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Lj1g3v4154950.1

Overview

Field Value
Gene ID Lj1g3v4154950
Transcript ID Lj1g3v4154950.1
Lotus japonicus genome version MG20 v3.0
Description BTB/POZ ankyrin repeat protein [Lotus japonicus] gi|343794556|gb|AEM62768.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR24413:SF126
1 228 228 2.20E-284 –
PANTHER
PTHR24413
1 228 228 2.20E-284 –
SUPERFAMILY
SSF54695
8 160 153 2.67E-19
IPR011333
Gene3D
G3DSA:3.30.710.10
12 158 147 3.50E-21 –
Pfam
PF00651
16 112 97 4.30E-14
IPR000210
ProSiteProfiles
PS50097
25 109 85 17.335
IPR000210
SMART
SM00225
25 162 138 4.40E-22
IPR000210
Pfam
PF11900
197 260 64 1.20E-14
IPR024228
PANTHER
PTHR24413:SF126
248 477 230 2.20E-284 –
PANTHER
PTHR24413
248 477 230 2.20E-284 –
CDD
cd00204
262 358 97 1.93E-13 –
Pfam
PF12796
266 348 83 2.30E-10
IPR020683
SUPERFAMILY
SSF48403
277 361 85 2.64E-18
IPR020683
Gene3D
G3DSA:1.25.40.20
282 359 78 5.10E-17
IPR020683
ProSiteProfiles
PS50297
283 356 74 16.892
IPR020683
SMART
SM00248
283 313 31 7
IPR002110
ProSiteProfiles
PS50088
318 350 33 11.808
IPR002110
SMART
SM00248
318 347 30 1.30E-05
IPR002110
MobiDBLite
mobidb-lite
401 437 37 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of

Genome browser

LORE1 insertions 6

Expression data

Expression pattern

Expression pattern of Lj1g3v4154950.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v4154950.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.