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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • SM00508
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 40 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 0.035s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0241779.1
n.a. ASH1-like protein [Phaseolus vulgaris] gi|342209884|gb|AEL16989.1| chr0 125480301 125486508 -
2 domain predictions
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Lj0g3v0265609.1
n.a. Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4 [Medicago truncatula] gi|357505017|ref|XP_003622797.1| chr0 137616300 137624390 +
2 domain predictions
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Lj0g3v0308279.1
n.a. PREDICTED: histone-lysine N-methyltransferase ATX2-like [Glycine max] gi|356526623|ref|XP_003531916.1| chr0 160950568 160957248 +
2 domain predictions
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Lj0g3v0309989.1
n.a. PREDICTED: histone-lysine N-methyltransferase SUVR5-like [Glycine max] gi|356561269|ref|XP_003548905.1| chr0 161816987 161826481 -
2 domain predictions
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Lj1g3v0887590.1
n.a. PREDICTED: histone-lysine N-methyltransferase ASHH2-like [Glycine max] gi|356507632|ref|XP_003522568.1| chr1 11315183 11328722 +
2 domain predictions
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Lj1g3v0887590.2
n.a. PREDICTED: histone-lysine N-methyltransferase ASHH2-like [Glycine max] gi|356507632|ref|XP_003522568.1| chr1 11316000 11328722 +
2 domain predictions
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Lj1g3v5034780.1
n.a. PREDICTED: histone-lysine N-methyltransferase ATX3-like [Cicer arietinum] gi|502113957|ref|XP_004494815.1| chr1 61526566 61539647 -
2 domain predictions
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Lj2g3v0523280.1
n.a. PREDICTED: histone-lysine N-methyltransferase ASHH3-like [Glycine max] gi|356530969|ref|XP_003534051.1| chr2 6971562 6982866 +
2 domain predictions
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Lj2g3v1989010.1
n.a. PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH6-like [Cicer arietinum] gi|502160414|ref|XP_004511737.1| chr2 29682391 29694387 -
2 domain predictions
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Lj3g3v2441840.1
n.a. PREDICTED: histone-lysine N-methyltransferase ATX3-like [Glycine max] gi|356522510|ref|XP_003529889.1| chr3 30108466 30117187 -
2 domain predictions
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Lj3g3v2441840.2
n.a. PREDICTED: histone-lysine N-methyltransferase ATX3-like [Glycine max] gi|356522510|ref|XP_003529889.1| chr3 30108466 30118179 -
2 domain predictions
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Lj5g3v0528960.1
n.a. Uncharacterized protein isoform 3 [Theobroma cacao] gi|508782146|gb|EOY29402.1| chr5 5835200 5847660 -
2 domain predictions
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Lj5g3v0528960.2
n.a. Uncharacterized protein isoform 1 [Theobroma cacao] gi|508782144|gb|EOY29400.1| chr5 5835200 5847610 -
2 domain predictions
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Lj5g3v2244670.1
n.a. PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4-like [Cicer arietinum] gi|502106852|ref|XP_004493077.1| chr5 32535927 32538525 -
2 domain predictions
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Lj6g3v1048900.1
n.a. PREDICTED: histone-lysine N-methyltransferase ASHR3-like [Glycine max] gi|356514491|ref|XP_003525939.1| chr6 11815461 11820333 +
2 domain predictions
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Lj6g3v1048900.2
n.a. PREDICTED: histone-lysine N-methyltransferase ASHR3-like, partial [Cucumis sativus] gi|449530608|ref|XP_004172286.1| chr6 11817674 11820333 +
2 domain predictions
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LotjaGi1g1v0226000_LC.3
n.a. Histone-lysine N-methyltransferase; TAIR: AT5G53430.1 SET domain group 29; Swiss-Prot: sp|Q8GZ42|ATX5_ARATH Histone-lysine N-methyltransferase ATX5; TrEMBL-Plants: tr|A0A151TYG2|A0A151TYG2_CAJCA Histone-lysine N-methyltransferase; Found in the gene: LotjaGi1g1v0226000_LC LjG1.1_chr1 52330652 52343925 +
2 domain predictions
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LotjaGi1g1v0267000.1
n.a. histone-lysine N-methyltransferase; TAIR: AT1G77300.1 histone-lysine N-methyltransferase; Swiss-Prot: sp|Q2LAE1|ASHH2_ARATH Histone-lysine N-methyltransferase ASHH2; TrEMBL-Plants: tr|A0A0B2SJ73|A0A0B2SJ73_GLYSO Histone-lysine N-methyltransferase ASHH2; Found in the gene: LotjaGi1g1v0267000 LjG1.1_chr1 65255375 65270570 +
2 domain predictions
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LotjaGi1g1v0267000.2
n.a. histone-lysine N-methyltransferase; TAIR: AT1G77300.1 histone-lysine N-methyltransferase; Swiss-Prot: sp|Q2LAE1|ASHH2_ARATH Histone-lysine N-methyltransferase ASHH2; TrEMBL-Plants: tr|A0A0B2SJ73|A0A0B2SJ73_GLYSO Histone-lysine N-methyltransferase ASHH2; Found in the gene: LotjaGi1g1v0267000 LjG1.1_chr1 65255375 65270570 +
2 domain predictions
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LotjaGi1g1v0267000.3
n.a. histone-lysine N-methyltransferase; TAIR: AT1G77300.1 histone-lysine N-methyltransferase; Swiss-Prot: sp|Q2LAE1|ASHH2_ARATH Histone-lysine N-methyltransferase ASHH2; TrEMBL-Plants: tr|A0A0B2SJ73|A0A0B2SJ73_GLYSO Histone-lysine N-methyltransferase ASHH2; Found in the gene: LotjaGi1g1v0267000 LjG1.1_chr1 65255427 65268351 +
2 domain predictions
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LotjaGi1g1v0284200.1
n.a. Histone-lysine N-methyltransferase; TAIR: AT5G53430.1 SET domain group 29; Swiss-Prot: sp|Q8GZ42|ATX5_ARATH Histone-lysine N-methyltransferase ATX5; TrEMBL-Plants: tr|I1JYS9|I1JYS9_SOYBN Histone-lysine N-methyltransferase; Found in the gene: LotjaGi1g1v0284200 LjG1.1_chr1 69176904 69188234 -
2 domain predictions
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LotjaGi1g1v0529500.1
n.a. Histone-lysine N-methyltransferase; TAIR: AT1G05830.1 trithorax-like protein 2; Swiss-Prot: sp|P0CB22|ATX2_ARATH Histone-lysine N-methyltransferase ATX2; TrEMBL-Plants: tr|A0A151TCT2|A0A151TCT2_CAJCA Histone-lysine N-methyltransferase ATX2; Found in the gene: LotjaGi1g1v0529500 LjG1.1_chr1 105619940 105654969 -
2 domain predictions
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LotjaGi1g1v0529500.2
n.a. Histone-lysine N-methyltransferase; TAIR: AT1G05830.1 trithorax-like protein 2; Swiss-Prot: sp|P0CB22|ATX2_ARATH Histone-lysine N-methyltransferase ATX2; TrEMBL-Plants: tr|A0A151TCT2|A0A151TCT2_CAJCA Histone-lysine N-methyltransferase ATX2; Found in the gene: LotjaGi1g1v0529500 LjG1.1_chr1 105622284 105654909 -
2 domain predictions
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LotjaGi1g1v0529500.3
n.a. Histone-lysine N-methyltransferase; TAIR: AT1G05830.1 trithorax-like protein 2; Swiss-Prot: sp|P0CB22|ATX2_ARATH Histone-lysine N-methyltransferase ATX2; TrEMBL-Plants: tr|A0A151TCT2|A0A151TCT2_CAJCA Histone-lysine N-methyltransferase ATX2; Found in the gene: LotjaGi1g1v0529500 LjG1.1_chr1 105628474 105654797 -
2 domain predictions
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LotjaGi2g1v0165900.1
n.a. Histone-lysine N-methyltransferase; TAIR: AT2G44150.1 histone-lysine N-methyltransferase ASHH3; Swiss-Prot: sp|Q945S8|ASHH3_ARATH Histone-lysine N-methyltransferase ASHH3; TrEMBL-Plants: tr|A0A0B2NX70|A0A0B2NX70_GLYSO Histone-lysine N-methyltransferase ASHH3; Found in the gene: LotjaGi2g1v0165900 LjG1.1_chr2 57585729 57597709 +
2 domain predictions
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LotjaGi2g1v0165900.2
n.a. Histone-lysine N-methyltransferase; TAIR: AT2G44150.1 histone-lysine N-methyltransferase ASHH3; Swiss-Prot: sp|Q945S8|ASHH3_ARATH Histone-lysine N-methyltransferase ASHH3; TrEMBL-Plants: tr|A0A0B2NX70|A0A0B2NX70_GLYSO Histone-lysine N-methyltransferase ASHH3; Found in the gene: LotjaGi2g1v0165900 LjG1.1_chr2 57585743 57597610 +
2 domain predictions
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LotjaGi2g1v0222100_LC.1
n.a. Histone-lysine N-methyltransferase; TAIR: AT5G13960.1 histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4-like protein; Swiss-Prot: sp|Q8GZB6|SUVH4_ARATH Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4; TrEMBL-Plants: tr|G7KY38|G7KY38_MEDTR SET-domain protein lysine methyltransferase family protein, putative; Found in the gene: LotjaGi2g1v0222100_LC LjG1.1_chr2 67754274 67762191 +
2 domain predictions
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LotjaGi2g1v0222100_LC.2
n.a. Histone-lysine N-methyltransferase; TAIR: AT5G13960.1 histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4-like protein; Swiss-Prot: sp|Q8GZB6|SUVH4_ARATH Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4; TrEMBL-Plants: tr|G7KY38|G7KY38_MEDTR SET-domain protein lysine methyltransferase family protein, putative; Found in the gene: LotjaGi2g1v0222100_LC LjG1.1_chr2 67754276 67762262 +
2 domain predictions
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LotjaGi2g1v0419200.1
n.a. Histone-lysine N-methyltransferase, H3 lysine-9 specific; TAIR: AT2G22740.1 SU(VAR)3-9 homolog 6; Swiss-Prot: sp|Q8VZ17|SUVH6_ARATH Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH6; TrEMBL-Plants: tr|A0A1J7GXF1|A0A1J7GXF1_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0419200 LjG1.1_chr2 91740680 91751300 -
2 domain predictions
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LotjaGi2g1v0419200.2
n.a. Histone-lysine N-methyltransferase, H3 lysine-9 specific; TAIR: AT2G22740.1 SU(VAR)3-9 homolog 6; Swiss-Prot: sp|Q8VZ17|SUVH6_ARATH Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH6; TrEMBL-Plants: tr|A0A1J7GXF1|A0A1J7GXF1_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0419200 LjG1.1_chr2 91743422 91751275 -
2 domain predictions
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LotjaGi3g1v0394900.1
n.a. Histone-lysine N-methyltransferase; TAIR: AT3G61740.2 SET domain protein 14; Swiss-Prot: sp|Q9M364|ATX3_ARATH Histone-lysine N-methyltransferase ATX3; TrEMBL-Plants: tr|A0A151SIL1|A0A151SIL1_CAJCA Histone-lysine N-methyltransferase; Found in the gene: LotjaGi3g1v0394900 LjG1.1_chr3 79460600 79470621 -
2 domain predictions
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LotjaGi3g1v0394900.2
n.a. Histone-lysine N-methyltransferase; TAIR: AT3G61740.2 SET domain protein 14; Swiss-Prot: sp|Q9M364|ATX3_ARATH Histone-lysine N-methyltransferase ATX3; TrEMBL-Plants: tr|A0A151SIL1|A0A151SIL1_CAJCA Histone-lysine N-methyltransferase; Found in the gene: LotjaGi3g1v0394900 LjG1.1_chr3 79460910 79470626 -
2 domain predictions
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LotjaGi4g1v0113800_LC.2
n.a. Histone-lysine N-methyltransferase; TAIR: AT2G23740.2 histone-lysine N-methyltransferase SUVR5; Swiss-Prot: sp|O64827|SUVR5_ARATH Histone-lysine N-methyltransferase SUVR5; TrEMBL-Plants: tr|K7MHC3|K7MHC3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0113800_LC LjG1.1_chr4 16393304 16420972 +
2 domain predictions
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LotjaGi4g1v0113800_LC.5
n.a. Histone-lysine N-methyltransferase; TAIR: AT2G23740.2 histone-lysine N-methyltransferase SUVR5; Swiss-Prot: sp|O64827|SUVR5_ARATH Histone-lysine N-methyltransferase SUVR5; TrEMBL-Plants: tr|A0A0B2SI32|A0A0B2SI32_GLYSO Histone-lysine N-methyltransferase SUVR5; Found in the gene: LotjaGi4g1v0113800_LC LjG1.1_chr4 16410504 16419911 +
2 domain predictions
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LotjaGi5g1v0288900.1
n.a. Histone-lysine N-methyltransferase; TAIR: AT1G76710.1 SET domain group 26; Swiss-Prot: sp|Q84WW6|ASHH1_ARATH Histone-lysine N-methyltransferase ASHH1; TrEMBL-Plants: tr|A0A0S3SND2|A0A0S3SND2_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0288900 LjG1.1_chr5 60557303 60564179 -
2 domain predictions
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LotjaGi5g1v0349400.1
n.a. Histone-lysine N-methyltransferase, H3 lysine-9 specific; TAIR: AT5G13960.1 histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4-like protein; Swiss-Prot: sp|Q8GZB6|SUVH4_ARATH Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4; TrEMBL-Plants: tr|A0A0R0FUI7|A0A0R0FUI7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0349400 LjG1.1_chr5 66488392 66491484 -
2 domain predictions
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LotjaGi6g1v0199300.1
n.a. Histone-lysine N-methyltransferase; TAIR: AT4G30860.1 SET domain group 4; Swiss-Prot: sp|Q949T8|ASHR3_ARATH Histone-lysine N-methyltransferase ASHR3; TrEMBL-Plants: tr|A0A0L9UBQ6|A0A0L9UBQ6_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0199300 LjG1.1_chr6 49604942 49609813 -
2 domain predictions
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LotjaGi6g1v0242900.1
n.a. Histone-lysine N-methyltransferase; TAIR: AT5G42400.1 SET domain protein 25; Swiss-Prot: sp|F4K1J4|ATXR7_ARATH Histone-lysine N-methyltransferase ATXR7; TrEMBL-Plants: tr|K7LBW1|K7LBW1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0242900 LjG1.1_chr6 55528950 55545399 -
2 domain predictions
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LotjaGi6g1v0242900.2
n.a. Histone-lysine N-methyltransferase; TAIR: AT5G42400.1 SET domain protein 25; Swiss-Prot: sp|F4K1J4|ATXR7_ARATH Histone-lysine N-methyltransferase ATXR7; TrEMBL-Plants: tr|K7LBW1|K7LBW1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0242900 LjG1.1_chr6 55529648 55545521 -
2 domain predictions
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LotjaGi6g1v0242900.3
n.a. Histone-lysine N-methyltransferase; TAIR: AT5G42400.1 SET domain protein 25; Swiss-Prot: sp|F4K1J4|ATXR7_ARATH Histone-lysine N-methyltransferase ATXR7; TrEMBL-Plants: tr|K7LBW1|K7LBW1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0242900 LjG1.1_chr6 55534353 55545237 -
2 domain predictions
 –