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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0338569 |
| Transcript ID | Lj0g3v0338569.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: ubiquitin carboxyl-terminal hydrolase 14-like [Glycine max] gi|356517211|ref|XP_003527282.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PIRSF | 8 | 776 | 769 | 3.70E-264 | ||
| SUPERFAMILY | 163 | 271 | 109 | 3.53E-31 | – | |
| Gene3D | 179 | 278 | 100 | 1.10E-17 | ||
| ProSiteProfiles | 183 | 257 | 75 | 16.896 | ||
| SMART | 184 | 239 | 56 | 2.00E-21 | ||
| Pfam | 185 | 258 | 74 | 1.20E-16 | ||
| SUPERFAMILY | 309 | 484 | 176 | 7.06E-63 | – | |
| PANTHER | 312 | 378 | 67 | 1.80E-56 | – | |
| PANTHER | 312 | 378 | 67 | 1.80E-56 | – | |
| Pfam | 313 | 775 | 463 | 6.30E-33 | ||
| ProSiteProfiles | 313 | 776 | 464 | 31.82 | ||
| CDD | 314 | 596 | 283 | 7.75E-109 | – | |
| ProSitePatterns | 314 | 329 | 16 | – | ||
| PANTHER | 401 | 484 | 84 | 1.80E-56 | – | |
| PANTHER | 401 | 484 | 84 | 1.80E-56 | – | |
| PANTHER | 518 | 599 | 82 | 1.80E-56 | – | |
| PANTHER | 518 | 599 | 82 | 1.80E-56 | – | |
| SUPERFAMILY | 526 | 656 | 131 | 7.06E-63 | – | |
| Gene3D | 616 | 650 | 35 | 6.00E-07 | – | |
| ProSiteProfiles | 622 | 663 | 42 | 10.956 | ||
| SMART | 624 | 662 | 39 | 1.40E-06 | ||
| Pfam | 624 | 660 | 37 | 7.70E-07 | ||
| CDD | 624 | 668 | 45 | 1.10E-18 | – | |
| Gene3D | 654 | 724 | 71 | 5.40E-26 | – | |
| SUPERFAMILY | 676 | 724 | 49 | 3.11E-11 | ||
| ProSiteProfiles | 682 | 722 | 41 | 14.017 | ||
| SMART | 684 | 721 | 38 | 3.80E-10 | ||
| Pfam | 684 | 719 | 36 | 7.40E-09 | ||
| SUPERFAMILY | 709 | 775 | 67 | 7.06E-63 | – | |
| MobiDBLite | 725 | 745 | 21 | – | – | |
| PANTHER | 745 | 775 | 31 | 1.80E-56 | – | |
| PANTHER | 745 | 775 | 31 | 1.80E-56 | – | |
| ProSitePatterns | 753 | 771 | 19 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Thiol-dependent ubiquitin-specific protease activity | Catalysis of the thiol-dependent hydrolysis of a peptide bond formed by the C-terminal glycine of ubiquitin and another protein. | ||
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Biological process | Ubiquitin-dependent protein catabolic process | The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein. | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. | ||
| Biological process | Protein deubiquitination | The removal of one or more ubiquitin groups from a protein. | ||
| Molecular function | Thiol-dependent ubiquitinyl hydrolase activity | Catalysis of the thiol-dependent hydrolysis of an ester, thioester, amide, peptide or isopeptide bond formed by the C-terminal glycine of ubiquitin. |
Expression pattern of Lj0g3v0338569.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0338569.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.