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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0105100 |
| Transcript ID | LotjaGi1g1v0105100.7 |
| Related isoforms 6 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ubiquitin-conjugating enzyme E2; TAIR: AT1G64230.4 ubiquitin-conjugating enzyme 28; Swiss-Prot: sp|P35135|UBC4_SOLLC Ubiquitin-conjugating enzyme E2-17 kDa; TrEMBL-Plants: tr|M5W1P5|M5W1P5_PRUPE Uncharacterized protein; Found in the gene: LotjaGi1g1v0105100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:16235830..16239684) extracted from Lotus japonicus Gifu genome v1.2.
ATAAGCTGTAACTTTCTTTTTTGGTTGTTTGAAATTAGTTGCAGGGTTCTCTTATTTTTGTATTCTACCAACTGAAATAT TTTTTTATATATCAGGTCCTGTGGCTGAGGACATGTTTCACTGGCAAGCCACAATCATGGGACCTGCTGATAGCCCATAT GCAGGTGGTGTTTTCCTGGTTTCGATTCATTTTCCTCCTGATTATCCATTCAAGCCACCAAAGGTAATGGATCCTATTTC ATTCCTACATTTGTTGCTTGTATCGTTCTTCTGATGCTGTGTTAATGTTGGGGATTGGTTTGCTATACAACCTCTGTTGT TCGACATGTCATTCTTGGTTTTGTATGTCTGGAGTTCAAACTGCTTTCTAAAGCATTTTTAAAGATGAATGTGACTATGG ACTTAGCATTCAGCGTGCTCAATCTTAAGTAGTAGTCGAGGTTTTATTGAGCTAGATTCTTGACAACCTTTGCTCATACT ACTCAAACTGTTGCCAGGCTTGTATTGGTGCAATTGCAAACAGGTCACTGTGAGTGCCCTTGACTAGTTCCAGACAATAT GAAGGAGGACCCCCTTATTAAATTTACAGTGGGTGTGGTGTAAGTTATGATTATACTTACATCTACTGGAGATGAAAATA GTTTTACAGATTAAGGGAGAGAAATACCTTTAGTGGGTAACAAGTAACAACAGTGAACTATGGAGGGGCTAAAGGATTTA GAATGCTTGATTAGCTTCATTTGAAGCAGTGGAATTGTCTTTATTGTTAAAAGCAAAAGGGGGTGTTGTTTGATGTTTTT TTTGTACTAGTTTTTTTTTTCCTTGTTGGTGTTTTCTGGATGGAGTTTCCTGGGAGGGTTTTGGGGTCGTTGTGGTGATT CATTTCTCCTTCTGACATGTTTGTTTTGCGGTTCTATGGGTTTACTTTGTTTTCCTTCAGTTGGTACCTTGTGGTTTGTT TTGGAGGGTATCTTATCTCTTGCATTTTCACTTCATTTCATATTTAATAATATTTCGTTTTCTATTCAATATATTGATGA CAACTGAAGCTTTACCCCATCAGGCTGGGTTGGTCACATAGATCAAATATTGCACATATGTTTTGTCAAAAAACCAAGTC TATTAGTTCATCTATATCTAAGCTTCACTTAGGGTTTTTCTTGGCCTTGCATTACCTCTAGTAAATTGGTGCTTCTATTA TCCTATCCCTCACATGGCCAAATAACAATCTCAGGTAAAATTCTACCATCTTTTTCCCAATAGATGCTACCTTAGTGTCT TTAATACATTCATTCTTGATCTTGTCCTGTGTGTCCACTCATTCACCACATTCTGATTTCAGCAGCACTTAGGTATTGAT CTTTTTACCATAAAATATTGCGGGTTCTATGGCTTTATAGTAAAATTTTCCTTTGAGCTAGCCAGCTAGGGAGGCACCTT TAGATCACACAGGTAATACATGAAACATATCTGCATTTCATCCACCTAGCTCAAATGTTATAATTACATCTCCGTCTACA CAAAGTTAATTTTTTTTCAAGAAGATGCAGGATTGACATTGGATAACTTTCACATAAAGGGAATTAAGTTTGTGATTCGG CTTTACTGGCAGTCTAGCATTGGGTAGCTTTTATATTTTCTCTAATTTGGTGTGCAGTAGGTAACTTGAGTCTTTAATGT GTATCACTTTTTCATTCTTTCTATGTACTAGGATAGAAATATAACTTATATCCAGCTTTCTACCTGTCTTTAATTGGTTA AAAACTCTCAGTTCATTTAAGGAGAAAATATCTACTAATGGATCCTTACCACTAATATTGTGGTTCTGGAATTACAATTT TTGTTTGCCAAAACTTCTTTATTTTGTTTTCATGTGGGTACATACACGATCTATCTTCCACATGTTTGTGTATTTGAATA CCAAGCATTTGAAATAATATTGATTTCTTCATGAACTTGACATAAGAATTTATCCTTAGGAAGAAATATTGGTTTGTTAT TGTTTTTATTTATCAAATGTCCATAGGTTTTTTTGCTTGAAAAAAACCATAGGTAACAATTTCTTTTATGTGAATTGTCA TGGATGAAAGTTTAGATATGGTTCTATGGGAGTTTTCAGAACATGGTACGAGTTTGCATGTACTGTATTCCACAACTTGG TCTTATCTCGGGTCGGCTGCACTACCTGGATCAAACAGCACAACATTGTAGTGCTTTATTTATTAAAAAAAAACTATTGA AAATCCATTTGGAATTAGGTCTTTTTCAATGTTTTCCCTTTTAGGCTATATTGCATTTGAAAATAGTTTTATATATAGAA TTATGAAGTTGGATTTCATAAGTTACAAAATTAGTTACTTCTATTATGATTCATTTCACTGCCATAGCACAGTTGTATCA CCAAGGGAAGTGGAGACTGCATAAAAAAGAATTGTCTTTCTGAATTATTGACTCAAAGGAGACTCTTCTCTGCGGAAGAA AGATGCTACTCTAGTGCTTCTGATCTATTTTTCTTGGGGCATATATCTAGGCTGTAGTTTCCTTCTCCCCGGTTCCTTTG GGCATCCCCCTCTTCTGTTGTCAGCCCATTGCGCATGCTTTTGTGCACTCGCACATTCAGCTCAATTAGTAGAAAATATA GTTGCAAAGAAAGTTAGAATTTATGGTTGCAAAAATTAGGCGTTGCATGTTAATGTTGACAGAGACCCCAATTTCACTGT CTTGCTTGTTAAGTGAGATAAATCTTCTTTTCTTCCTTTGTTTTTTTATTTTTGCCTTCTTTTTATTGATTTACTATTAT TCCCAGTTGTAATTTGATATGCAATGCACCCAAATTCCAATAGGACTAACTAGCTTTATCCTGTCAAATTACTTGTTGGT ACTATTTTGAACTTCTTGTGAGACTCACGTATAAAATTAACATAATTAATATTCCAAACAACTGCAGGTGGCATTTAGGA CTAAGGTATTTCACCCGAACATCAACAGTAATGGCAGTATATGCCTTGACATTCTTAAAGAACAGTGGAGTCCAGCACTA ACCATTTCCAAGGTTTGATTTCACTTTGCTTGTTTATCTTTGATAACATGATTTTTAATAATTTCGCACGAGTTTTGAGC TTTTTTTTATCCTTGCTGATATTGCTGAACGTAATTTCTGTATTATGATTTGATATCCTGCCCGTTATGATTTATGAGGC AAATCACTGTAATTTCTGTATTTTCTTTTGGGCTTGTGACTGCTGAATTTAAGAAGTATAAGGGTGGTTGTGCCTTTGGT GCTTAAATGTTGGGGAGTTGAAGCTTATATTTGGATTAAGAAACAGGGCTTATTTGAGTAAAAATTATCTACAATTATTT TTTTTCTTGGGGATTTTTTAAACATCTTCTAATTCTAGGAGACCCCCACCAAAAAGCTTTGTTTATTGCTGACGTTTTCA ACCATTGAAAGTATTGGATGTACATTTTAGTGTAGTAAAAATAGTCCAGGGATCTGCAATATAGCTTTCTCTTAACTTCA GTTTGAGCGTCTGTTCAAATCTCTCTAACTTTTGATCTGTTAACTTGAGCAATAGTTCACGTCACCTTGATCAGCCTGAT TAGACAAATCAATTTTTAGTCATTTAATAACTGAAATCTGTTTATTTTTTGGGATATTGTTGTGGTGTATGCTTTAAGCC CTTGGAGAAAACTAATTCTACTATTTTTCAGGTCCTTCTGTCAATTTGCTCCTTGTTGACGGACCCCAACCCCGATGATC CTCTTGTGCCTGAAATTGCGCACATGTACAAGACTGACCGGGCCAAGTATGAAGCTACCGCTCGCAGCTGGACACAGAAG TATGCCATGGGATGA
CDS sequence (LotjaGi1g1v0105100.7) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTTCACTGGCAAGCCACAATCATGGGACCTGCTGATAGCCCATATGCAGGTGGTGTTTTCCTGGTTTCGATTCATTT TCCTCCTGATTATCCATTCAAGCCACCAAAGGTGGCATTTAGGACTAAGGTATTTCACCCGAACATCAACAGTAATGGCA GTATATGCCTTGACATTCTTAAAGAACAGTGGAGTCCAGCACTAACCATTTCCAAGGTCCTTCTGTCAATTTGCTCCTTG TTGACGGACCCCAACCCCGATGATCCTCTTGTGCCTGAAATTGCGCACATGTACAAGACTGACCGGGCCAAGTATGAAGC TACCGCTCGCAGCTGGACACAGAAGTATGCCATGGGATGA
Protein sequence (LotjaGi1g1v0105100.7) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFHWQATIMGPADSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSL LTDPNPDDPLVPEIAHMYKTDRAKYEATARSWTQKYAMG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 118 | 118 | 3.8E-82 | – | |
| SMART | 1 | 118 | 118 | 8.6E-57 | – | |
| PANTHER | 1 | 118 | 118 | 3.8E-82 | – | |
| Pfam | 1 | 112 | 112 | 1.7E-47 | ||
| CDD | 1 | 113 | 113 | 5.01963E-62 | ||
| ProSiteProfiles | 1 | 107 | 107 | 42.602 | ||
| SUPERFAMILY | 1 | 118 | 118 | 8.97E-56 | ||
| Gene3D | 1 | 119 | 119 | 4.9E-63 | ||
| ProSitePatterns | 45 | 60 | 16 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0105100.7, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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