Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0105100 |
| Transcript ID | LotjaGi1g1v0105100.1 |
| Related isoforms 6 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ubiquitin-conjugating enzyme E2; TAIR: AT5G41700.1 ubiquitin conjugating enzyme 8; Swiss-Prot: sp|P35135|UBC4_SOLLC Ubiquitin-conjugating enzyme E2-17 kDa; TrEMBL-Plants: tr|B9HDK6|B9HDK6_POPTR Uncharacterized protein; Found in the gene: LotjaGi1g1v0105100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:16234739..16240731) extracted from Lotus japonicus Gifu genome v1.2.
TTACATTACAAGTTGATATTCTCTTTCTTTATCTCCACCATTAAAAAATAATAAAATAAAAAACACTCCGTTGATCTCAC GCTATCATCCAATCCATTCCTTTCTGAAAATTCTAGAACCTCTCTCTTTGTATCCTCGCTTCCCTTCCTTCCTTCCTTCT TCTTCTTATTCTCCTCCTTCAACCCTCGCCACCTCTCTCACCGCTTCACCGCCTCTCAATCCCTCTGAGATTCTCACCCA GGTCGGTTTCCTCCTTCATTCGCTTCATCCCCTTCCTCTGTACCGATTGAAATCGATTTTTTATGCCCCTTTATTATATA TGAATCAAACTTCATGTTTTCGCGTTCAATTCTGTTGATCGGTTTCTGGGTCTCTCGATCTGTTGCAGATAACGTTTTTA TTACGTTTTTCAGTTTTTTTTTTTAATTGTTGTGTTGATTTTGTTTTTTGTTTTGTGAAGGTTTAGCTATGGCGTCGAAA CGTATCTTGAAGGAGCTCAAGGATTTGCAGAAGGACCCTCCGACCTCTTGCAGTGCCGGTGAGGTTCCTGATCCCTTTGT CCCTCCACCCCTGTATGAAGAAAACTGTGAATTTTTGTAATTTTATCTTTTGATTTTGATCTGTAGCAACTGCACCCCTT TATTAGGTTTTAGATTCAAATTGGATTGATGATTTTAGACTAAACAGATTTTAATTTTTGTTTGGGTTTGTGTGGATTTT TTTAACTAATATGGCAAAATTGTGGGTCTTTGTTAAAATTTGGATGCACTTTAGAGAGAAAGGTGTATAGTTATAATCAT TTGATTAGAAAATCAGGGCTAATATTGAAGTAAAGTATGTGCAATTGTTTAACTAGTTATGTAATTTGTTTAAATTTGCT CTATTGGTTTTCCAGTCTACATTTTTCCCTGTTGAGGTGCACCCTTCACTTAGGGAGTGATGGGTTTAGGTATATATATG TAGTGCTCCCATGCCCTGATTGTTTGAGTGATGGGTTTAGGTATATATATGTAGTGCTCCCATGCCCTGATTGTTTGATT AAGCATATATTTATTTGATAATTAAGTTACTTCATTCATAGGTTATCACTTATAAGCTGTAACTTTCTTTTTTGGTTGTT TGAAATTAGTTGCAGGGTTCTCTTATTTTTGTATTCTACCAACTGAAATATTTTTTTATATATCAGGTCCTGTGGCTGAG GACATGTTTCACTGGCAAGCCACAATCATGGGACCTGCTGATAGCCCATATGCAGGTGGTGTTTTCCTGGTTTCGATTCA TTTTCCTCCTGATTATCCATTCAAGCCACCAAAGGTAATGGATCCTATTTCATTCCTACATTTGTTGCTTGTATCGTTCT TCTGATGCTGTGTTAATGTTGGGGATTGGTTTGCTATACAACCTCTGTTGTTCGACATGTCATTCTTGGTTTTGTATGTC TGGAGTTCAAACTGCTTTCTAAAGCATTTTTAAAGATGAATGTGACTATGGACTTAGCATTCAGCGTGCTCAATCTTAAG TAGTAGTCGAGGTTTTATTGAGCTAGATTCTTGACAACCTTTGCTCATACTACTCAAACTGTTGCCAGGCTTGTATTGGT GCAATTGCAAACAGGTCACTGTGAGTGCCCTTGACTAGTTCCAGACAATATGAAGGAGGACCCCCTTATTAAATTTACAG TGGGTGTGGTGTAAGTTATGATTATACTTACATCTACTGGAGATGAAAATAGTTTTACAGATTAAGGGAGAGAAATACCT TTAGTGGGTAACAAGTAACAACAGTGAACTATGGAGGGGCTAAAGGATTTAGAATGCTTGATTAGCTTCATTTGAAGCAG TGGAATTGTCTTTATTGTTAAAAGCAAAAGGGGGTGTTGTTTGATGTTTTTTTTGTACTAGTTTTTTTTTTCCTTGTTGG TGTTTTCTGGATGGAGTTTCCTGGGAGGGTTTTGGGGTCGTTGTGGTGATTCATTTCTCCTTCTGACATGTTTGTTTTGC GGTTCTATGGGTTTACTTTGTTTTCCTTCAGTTGGTACCTTGTGGTTTGTTTTGGAGGGTATCTTATCTCTTGCATTTTC ACTTCATTTCATATTTAATAATATTTCGTTTTCTATTCAATATATTGATGACAACTGAAGCTTTACCCCATCAGGCTGGG TTGGTCACATAGATCAAATATTGCACATATGTTTTGTCAAAAAACCAAGTCTATTAGTTCATCTATATCTAAGCTTCACT TAGGGTTTTTCTTGGCCTTGCATTACCTCTAGTAAATTGGTGCTTCTATTATCCTATCCCTCACATGGCCAAATAACAAT CTCAGGTAAAATTCTACCATCTTTTTCCCAATAGATGCTACCTTAGTGTCTTTAATACATTCATTCTTGATCTTGTCCTG TGTGTCCACTCATTCACCACATTCTGATTTCAGCAGCACTTAGGTATTGATCTTTTTACCATAAAATATTGCGGGTTCTA TGGCTTTATAGTAAAATTTTCCTTTGAGCTAGCCAGCTAGGGAGGCACCTTTAGATCACACAGGTAATACATGAAACATA TCTGCATTTCATCCACCTAGCTCAAATGTTATAATTACATCTCCGTCTACACAAAGTTAATTTTTTTTCAAGAAGATGCA GGATTGACATTGGATAACTTTCACATAAAGGGAATTAAGTTTGTGATTCGGCTTTACTGGCAGTCTAGCATTGGGTAGCT TTTATATTTTCTCTAATTTGGTGTGCAGTAGGTAACTTGAGTCTTTAATGTGTATCACTTTTTCATTCTTTCTATGTACT AGGATAGAAATATAACTTATATCCAGCTTTCTACCTGTCTTTAATTGGTTAAAAACTCTCAGTTCATTTAAGGAGAAAAT ATCTACTAATGGATCCTTACCACTAATATTGTGGTTCTGGAATTACAATTTTTGTTTGCCAAAACTTCTTTATTTTGTTT TCATGTGGGTACATACACGATCTATCTTCCACATGTTTGTGTATTTGAATACCAAGCATTTGAAATAATATTGATTTCTT CATGAACTTGACATAAGAATTTATCCTTAGGAAGAAATATTGGTTTGTTATTGTTTTTATTTATCAAATGTCCATAGGTT TTTTTGCTTGAAAAAAACCATAGGTAACAATTTCTTTTATGTGAATTGTCATGGATGAAAGTTTAGATATGGTTCTATGG GAGTTTTCAGAACATGGTACGAGTTTGCATGTACTGTATTCCACAACTTGGTCTTATCTCGGGTCGGCTGCACTACCTGG ATCAAACAGCACAACATTGTAGTGCTTTATTTATTAAAAAAAAACTATTGAAAATCCATTTGGAATTAGGTCTTTTTCAA TGTTTTCCCTTTTAGGCTATATTGCATTTGAAAATAGTTTTATATATAGAATTATGAAGTTGGATTTCATAAGTTACAAA ATTAGTTACTTCTATTATGATTCATTTCACTGCCATAGCACAGTTGTATCACCAAGGGAAGTGGAGACTGCATAAAAAAG AATTGTCTTTCTGAATTATTGACTCAAAGGAGACTCTTCTCTGCGGAAGAAAGATGCTACTCTAGTGCTTCTGATCTATT TTTCTTGGGGCATATATCTAGGCTGTAGTTTCCTTCTCCCCGGTTCCTTTGGGCATCCCCCTCTTCTGTTGTCAGCCCAT TGCGCATGCTTTTGTGCACTCGCACATTCAGCTCAATTAGTAGAAAATATAGTTGCAAAGAAAGTTAGAATTTATGGTTG CAAAAATTAGGCGTTGCATGTTAATGTTGACAGAGACCCCAATTTCACTGTCTTGCTTGTTAAGTGAGATAAATCTTCTT TTCTTCCTTTGTTTTTTTATTTTTGCCTTCTTTTTATTGATTTACTATTATTCCCAGTTGTAATTTGATATGCAATGCAC CCAAATTCCAATAGGACTAACTAGCTTTATCCTGTCAAATTACTTGTTGGTACTATTTTGAACTTCTTGTGAGACTCACG TATAAAATTAACATAATTAATATTCCAAACAACTGCAGGTGGCATTTAGGACTAAGGTATTTCACCCGAACATCAACAGT AATGGCAGTATATGCCTTGACATTCTTAAAGAACAGTGGAGTCCAGCACTAACCATTTCCAAGGTTTGATTTCACTTTGC TTGTTTATCTTTGATAACATGATTTTTAATAATTTCGCACGAGTTTTGAGCTTTTTTTTATCCTTGCTGATATTGCTGAA CGTAATTTCTGTATTATGATTTGATATCCTGCCCGTTATGATTTATGAGGCAAATCACTGTAATTTCTGTATTTTCTTTT GGGCTTGTGACTGCTGAATTTAAGAAGTATAAGGGTGGTTGTGCCTTTGGTGCTTAAATGTTGGGGAGTTGAAGCTTATA TTTGGATTAAGAAACAGGGCTTATTTGAGTAAAAATTATCTACAATTATTTTTTTTCTTGGGGATTTTTTAAACATCTTC TAATTCTAGGAGACCCCCACCAAAAAGCTTTGTTTATTGCTGACGTTTTCAACCATTGAAAGTATTGGATGTACATTTTA GTGTAGTAAAAATAGTCCAGGGATCTGCAATATAGCTTTCTCTTAACTTCAGTTTGAGCGTCTGTTCAAATCTCTCTAAC TTTTGATCTGTTAACTTGAGCAATAGTTCACGTCACCTTGATCAGCCTGATTAGACAAATCAATTTTTAGTCATTTAATA ACTGAAATCTGTTTATTTTTTGGGATATTGTTGTGGTGTATGCTTTAAGCCCTTGGAGAAAACTAATTCTACTATTTTTC AGGTCCTTCTGTCAATTTGCTCCTTGTTGACGGACCCCAACCCCGATGATCCTCTTGTGCCTGAAATTGCGCACATGTAC AAGACTGACCGGGCCAAGTATGAAGCTACCGCTCGCAGCTGGACACAGAAGTATGCCATGGGATGACCGCCTGCCCGAAA GCTGTTTAATGAAGCAGCAGCAGCAATGTCATGATTTATGTAAAACAAAAGATATTTTGAATGAATTTGAATGAATGCTT TCTTCTATTGTTAGTGGAACTCAACAATGGTAAGGGACCTGGTTATGATTTGTGAATATTTCTTTGTAAGGCACTTGTGA TGGAAGAAACGGTAATGTAATGTTTATGCAAACTTTTTGGTTGTTGATTTGATATTCCAAACGAGTAACTGAGTTATAAA GCCTACAAATTTGGCAGTTGCTGCATATTGATGTGAAAACTGTTACTTTTTTCGGGAAAGTACTTGTTATAGGGACTCCC AGTAGAGGAAGTGGTCTAATGAGTTTTGTGTGATTTAATTTCTCCTTTTTTTATTTCCAAATGCTGATTGCGTAGTTTCA CAGTAATATATCATGCTTCAAGTTTCAAGCACTAAGGTATTGATATCTGATATTGACATCCAATACAGTCTGTTTCAACT TGATTTTGACGGAGACAACTCAACTACAATAATAAGGAGTTGGATTTGTCCTTTGGGAAGGTTAAAGTTGAAACATTGTG CTTGGAAAAAGCCATCTTGTGGGCATGTTCAATTATGAGGGTTTTCAGTTCTAATTTTACAATGAATGGATAAACTGGTA AAAGTATTAATTATAGAGCGAACTTGGTAAAAAATTGTCTAAACTTTTCATGTTTGTATGATTAGGATGCTCACTGAAGA GAAAGGTTTATATATTTTCTCCATATCTTTCTTTTTTGAGTAATGTATATAACTTTGCATTCTTCTTGCCAAACTCCGCA ACCAAGTTGCAGAGGTCATTAAAAGCAGTTGAATGGTTTAGTTGACCATGAATTTAATATGCTGGGCTTTGGAAAAATGC ATTCTGAAAAGTGCTAGTGTTGTTTCAGCAAGAGTGAGACACGTTTGCAGTGAGGTCATGACAAGATGGTGGTAGAATTT AATTCAGAGTGGTTAATGCTGCAAGTGCAGACAAACAAACAAGAGAGTTGGGGGAAGTTAGCAAAAATACTGG
CDS sequence (LotjaGi1g1v0105100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGTCGAAACGTATCTTGAAGGAGCTCAAGGATTTGCAGAAGGACCCTCCGACCTCTTGCAGTGCCGGTCCTGTGGC TGAGGACATGTTTCACTGGCAAGCCACAATCATGGGACCTGCTGATAGCCCATATGCAGGTGGTGTTTTCCTGGTTTCGA TTCATTTTCCTCCTGATTATCCATTCAAGCCACCAAAGGTGGCATTTAGGACTAAGGTATTTCACCCGAACATCAACAGT AATGGCAGTATATGCCTTGACATTCTTAAAGAACAGTGGAGTCCAGCACTAACCATTTCCAAGGTCCTTCTGTCAATTTG CTCCTTGTTGACGGACCCCAACCCCGATGATCCTCTTGTGCCTGAAATTGCGCACATGTACAAGACTGACCGGGCCAAGT ATGAAGCTACCGCTCGCAGCTGGACACAGAAGTATGCCATGGGATGA
Protein sequence (LotjaGi1g1v0105100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPADSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINS NGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYEATARSWTQKYAMG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 147 | 147 | 3.5E-99 | – | |
| PANTHER | 1 | 147 | 147 | 3.5E-99 | – | |
| Gene3D | 1 | 148 | 148 | 2.0E-75 | ||
| SUPERFAMILY | 2 | 147 | 146 | 1.22E-66 | ||
| CDD | 3 | 142 | 140 | 4.89471E-76 | ||
| SMART | 4 | 147 | 144 | 5.5E-81 | – | |
| ProSiteProfiles | 4 | 136 | 133 | 48.743 | ||
| Pfam | 5 | 141 | 137 | 6.0E-54 | ||
| ProSitePatterns | 74 | 89 | 16 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0105100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…