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IPR012501

Source: InterPro

Description

IPR012501 is a Vacuolar protein sorting-associated protein 54, C-terminal.

<p>This entry represents a domain found in vacuolar protein sorting-associated protein 54 (VPS54), which acts as component of the GARP complex that is involved in retrograde transport from early and late endosomes to the trans-Golgi network (TGN). VPS54 is required to tether the complex to the TGN. However, it is not involved in endocytic recycling [[cite:PUB00077150]].</p>

This description is obtained from EB-eye REST.

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0042147
Biological process Retrograde transport, endosome to Golgi The directed movement of membrane-bounded vesicles from endosomes back to the trans-Golgi network where they are recycled for further rounds of transport.
Subterm of

Associated Lotus transcripts 5

Transcript Name Description Predicted domains Domain count
Lj0g3v0054399.1
– PREDICTED: vacuolar protein sorting-associated protein 54-like [Cicer arietinum] gi|502086597|ref|XP_004488267.1|
Domains
5
Lj0g3v0054399.2
–
Domains
5
Lj6g3v1104970.1
– PREDICTED: vacuolar protein sorting-associated protein 54-like [Glycine max] gi|356530523|ref|XP_003533830.1|
Domains
5
LotjaGi6g1v0213600.1
– Vacuolar protein sorting-associated protein 54; TAIR: AT4G19490.1 VPS54; Swiss-Prot: sp|F4JT76|VPS54_ARATH Vacuolar protein sorting-associated protein 54, chloroplastic; TrEMBL-Plants: tr|A0A0S3RHH5|A0A0S3RHH5_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0213600
Domains
6
LotjaGi6g1v0213600.2
– Vacuolar protein sorting-associated protein 54; TAIR: AT4G19490.1 VPS54; Swiss-Prot: sp|F4JT76|VPS54_ARATH Vacuolar protein sorting-associated protein 54, chloroplastic; TrEMBL-Plants: tr|A0A0S3RHH5|A0A0S3RHH5_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0213600
Domains
6

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
mobidb-lite MobiDBLite 1 20.00