Domain Predictions — View

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PF07928

Source: Pfam

Description

Vps54-like protein

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0042147 View details of GO:0042147 AmiGO InterPro QuickGO	Biological process	Retrograde transport, endosome to Golgi	The directed movement of membrane-bounded vesicles from endosomes back to the trans-Golgi network where they are recycled for further rounds of transport.	Subterm of GO:0016197 GO:0016482

Associated Lotus transcripts 5

Transcript	Name	Description	Predicted domains	Domain count
Lj0g3v0054399.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: vacuolar protein sorting-associated protein 54-like [Cicer arietinum] gi\|502086597\|ref\|XP_004488267.1\|	Domains IPR012501 PF07928 PTHR12965 PTHR12965:SF0 mobidb-lite	5
Lj0g3v0054399.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–		Domains IPR012501 PF07928 PTHR12965 PTHR12965:SF0 mobidb-lite	5
Lj6g3v1104970.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: vacuolar protein sorting-associated protein 54-like [Glycine max] gi\|356530523\|ref\|XP_003533830.1\|	Domains IPR012501 PF07928 PTHR12965 PTHR12965:SF0 mobidb-lite	5
LotjaGi6g1v0213600.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Vacuolar protein sorting-associated protein 54; TAIR: AT4G19490.1 VPS54; Swiss-Prot: sp\|F4JT76\|VPS54_ARATH Vacuolar protein sorting-associated protein 54, chloroplastic; TrEMBL-Plants: tr\|A0A0S3RHH5\|A0A0S3RHH5_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0213600	Domains IPR012501 IPR039745 PF07928 PTHR12965 PTHR12965:SF1 mobidb-lite	6
LotjaGi6g1v0213600.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Vacuolar protein sorting-associated protein 54; TAIR: AT4G19490.1 VPS54; Swiss-Prot: sp\|F4JT76\|VPS54_ARATH Vacuolar protein sorting-associated protein 54, chloroplastic; TrEMBL-Plants: tr\|A0A0S3RHH5\|A0A0S3RHH5_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0213600	Domains IPR012501 IPR039745 PF07928 PTHR12965 PTHR12965:SF1 mobidb-lite	6

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
mobidb-lite	MobiDBLite	1	20.00