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IPR039745

Source: InterPro

Description

IPR039745 is a Vacuolar protein sorting-associated protein 54.

<p>Vacuolar protein sorting-associated protein 54 (Vps54) is a component of the GARP (Vps52/53/54) complex that is involved in retrograde transport from early and late endosomes to the trans-Golgi network (TGN) [[cite:PUB00090045]]. Mammalian GARP complex has been shown to play a general role in the delivery of retrograde cargo into the TGN [[cite:PUB00090044]].</p>

This description is obtained from EB-eye REST.

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0000938
Cellular component GARP complex A quatrefoil tethering complex required for retrograde traffic from the early endosome back to the late Golgi and biogenesis of cytoplasmic vesicles.
Subterm of
GO:0042147
Biological process Retrograde transport, endosome to Golgi The directed movement of membrane-bounded vesicles from endosomes back to the trans-Golgi network where they are recycled for further rounds of transport.
Subterm of

Associated Lotus transcripts 2

Transcript Name Description Predicted domains Domain count
LotjaGi6g1v0213600.1
– Vacuolar protein sorting-associated protein 54; TAIR: AT4G19490.1 VPS54; Swiss-Prot: sp|F4JT76|VPS54_ARATH Vacuolar protein sorting-associated protein 54, chloroplastic; TrEMBL-Plants: tr|A0A0S3RHH5|A0A0S3RHH5_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0213600
Domains
6
LotjaGi6g1v0213600.2
– Vacuolar protein sorting-associated protein 54; TAIR: AT4G19490.1 VPS54; Swiss-Prot: sp|F4JT76|VPS54_ARATH Vacuolar protein sorting-associated protein 54, chloroplastic; TrEMBL-Plants: tr|A0A0S3RHH5|A0A0S3RHH5_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0213600
Domains
6

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
mobidb-lite MobiDBLite 1 50.00