Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi1g1v0787600.1

Overview

Field Value
Gene ID LotjaGi1g1v0787600
Transcript ID LotjaGi1g1v0787600.1
Lotus japonicus genome version Gifu v1.2
Description Violaxanthin de-epoxidase; TAIR: AT1G08550.1 non-photochemical quenching 1; Swiss-Prot: sp|Q9SM43|VDE_SPIOL Violaxanthin de-epoxidase, chloroplastic; TrEMBL-Plants: tr|A0A151TXT8|A0A151TXT8_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0787600
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:136036196..136039855) extracted from Lotus japonicus Gifu genome v1.2.

CACCATGCTCTTATCTCATCCAATGAGACGTCGCTTCTTCTTCTTCTTTTTTCTTCTTCATCTTCTTCCTTTCACTTTTT CTCATTCTGTTCCATTGCACGCACGCACGCAGTTACCTGCACTTACAAGGTTCACCATTATTCTGCTAGCTCAATATACT TGATTCTACATATTATCTCTGCTTTCAATTGCTGATTTATGCTGTACTGTATTTTTTCTGTAACAGTGTGAGGTCAAGTT TTGATGTGAGGATATTTGTATATATATACAGAATTTATATGTATATATGGCAGCTTTGGGTGCACACTCTGTGTTATTAT CTCATAAGGAATGCACCAATGCATGTATAAAAGTAGGGTTTCACAGGTTTCAATCTCCTCCAACTCCAACTTCAAGACTG GTTATGCTCAGAGTACTGTCTACTGCTAGAAAGCCAGCAAGCTTCTTGTTAAGGCCTCTTCGTCATTCTCACAGTTTGGG AAAATTCAAAGGAGATTCTTCATCAACAGCTACAAACTTTACACGGGTAAGAGCGTGTTTGAATACCAGTTGAGTAAAAC ATGAACTTTCAATTTTCATATTTTTTTTTGTGTCTTGAATTGTGTGTGAAGTTGTTGCATGCTGTATATAGTAGGTTTCG TTATATGGTGAAATGTTGTAGAGCCACTTATGTTTAGAAGCTACAAGTCTTAAGTATGTGTTTGGATTTCAGTTGGGTTG TTATAGTCCTGTCGATCCACATTAAACTTTGCATGACAAATTATAGCTAGCTTCTCCGTTGGTACATTGGGATATGTGAA CAACGCCAAACCAAACATACACTAAAGCTTCTAAGAACCTGTTTGGATGCGGCCTAAAGAGCCTTTATCGGAGCCTATCT AGTGTATTTATTTTAGTAGAGAAGCTCCAATCAAAAGGGCTATAAGTTAAGGTGTCTTGTATTATGTGCAAATCGTGAAA CTAAACATGCATGCAAATGGATAACCAAATCGATCCTAAGTCACTGCTAGTTCTGCCTACTTCATTGTTCTCACATTCGT ACTTACTTGTCCTCTTGTGTGAAAATTGTGAGACAAGCCAAATTTTGCTCCTGATGCTACACCATTTTATCCATTGTTCA GTTTTCCCCTTGTTTGGATGACAACAGATACTTGACTTTGCCGTCAATCGGTTGCGTGTTCAAATCAAAGATTGGAGTTA TTTGCGGATAATGGAAGTGGCCGGCATATTGGTGTGCATTTTAATGATCGTTCCCACAGCTGATGCTGTTGATGCTCTCA AAACTTGTTCTTGTTTGCTGAAGGAATGCAGGTAGGTATACCATCACTGTCTTGTCCTTTTTCCTGCTACAATTCCAGAA ACACCTTGTATATTACCTCAAAACCATAACAGAAAGCAATACAATTGCCTTTCTTTTATATATGTAGGATTGAACTGGCT AAGTGTATCTCAAACCCGTCTTGTGCTGCCAATGTTGCCTGTCTCCAAACTTGCAACAATCGACCTGATGAGACCGAATG CCAAGTTAGTCTTGTACTTTACATCAAGTTTATACCTGTATAGAGGTAAACTCTGCTTATGAAAGCTTCTGTTTCTTCTT AATATTATTTTTTTCAGATTAAATGCGGGGACCTGTTTGAAAACAGTGTGGTTGATCAATTTAATGAGTGTGCAGTCTCC CGGAAGAAATGTGTACCTAAGAAATCTGACGTGGGAGAGTTTCCTGCTCCAAATCCTGATGTCCTTGTGAAGAGCTTCAA TATGGCAGATTTCACTGGCAAGTGGTTCATCACTAGTGGCTTAAATCCTACCTTCGACGCATTTGACTGCCAATTACATG AATTTCACACAGAATCCAATAAACTTGTGGGTAATTTGTCATGGAGAATACAAACTCCAGATGAAGGATTTCTTACAAGG ACAGCTGAGCAGAGATTTGTGCAAGATCCTTCTTATCCGGGAATCCTCTACAATCATGATAATGAGTATCTTCACTATGA AGATGACTGGTAATTTCTTTCTCAGAAGTTCTCACTTCAATTTTCACTCCCCTAAACATGTATAGGAAATTAGGAATTGG CAACTATATTCACATGAAGCGTAACTCGCATATTGCTGTTTAAAACAAAATTCAAGCGCTTGAAGGAAGTGAATGTTACT TCCCACTTAAGTAAAGACAGAACATGTTGCTTTTCTCAGCACCCTTTACATGAGCATACCTTAAAATAGTTCTCTAGCAT CTTCATTAATAAATTTCACATTGCCAATGCATGAGAATTCTGGATTTTCTGTGATTAGACCCTACACTTTAAGGATTAGG ATTCCCTGCATGGATTTGAGTTTACTGCACTGCTGTCACAATACAGTCTGCTTGATTAAGATCAGACGGATCATGTTTTT AACATGTATTTATAACTTATTTACTAAGATTAAATGTTAACAGTCCGATCTGAATCTAACGACTCTCATATTGAGTGATT GGAGTAACTGAGTCAAAAGCTGACTGCAGTGAATCTGAATCCTTCCCTGCAGTAAGGGAAATCCCGCATTCAAGCATTTT GAGCCGTCACATTAATATCTGGCGATTCACATTATAGCGGTAATAAACAACTCGGAACAGTAACTAGTAATGCGAATCAG ACGGCCCAAAATACGTGAATGTAGGATTTTCCTAACTGCATGGAATCCAAATCCACCCTTTGAGCTCCACCTTACAGCTG TTCTTTGATATGTTGAATTTGGCCTTTCACTCCACCATAGAACTTACAAGCACTCATCTGCAGGTATATTTTGTCATCCC AGATTGAGAATAAACCAGATGACTACGTATTTGTATACTACCGAGGCCGAAACGATGCATGGGAGGGGTACGGTGGTGCT GTTGTGTACACAAGAAGTTCAGTTTTGCCTGAATCTATCATTCCTGAACTTGATAGAGCGGCTAAGAGTGTGGGAAGAGA CTTCAGCCAGTTCATCAGAACAGATAACAGCTGCGGGCCAGAGCCTTCATTGGTGGAGAGGCTGGAGAAAAAGGTGGAGG AAGGAGAGCAAACCATTGTGAGGGAAGTTGAAGAGTTAGAAGAAGAGGTAGAGAAAGTGGGGAGGACAGAGATGACCTTG TTTCAGAGGTTGGCAGAAGGGTTCAAAGTGTTTCAAGAGGATGAGGAAAATTTCTTAAGAGAGTTATCAAAAGAAGAAAC AGAAATACTTAGCGGGCTCAAAATGGAAGCTGCTGAAGTAGAAAAACTCTTTGGACGTGCCTTGCCTATCAGGAAACTAA GATAAGTGTCTGCAAAGGAACTCCAAGATAACATGGCATCATAGTTTTGTTTTGTTTGAGAGGAGCATTTGTGACATACT TTTTTAATGCTCTTTTTATTTTATATTGAAATTTTATGTTGATCTCGCTGAAAATTACAAACTGTCATTCTTTACTCTGT ATTTTGTCACTCATTATACCATTACTTTGCTTTAGATCCTCCTATCTCTTCTCCTTCATTACTTTACCGGTTTCAAATTT CATCCATTTGTTCAATCAACACATTCCTACCACTCCTGCATTTTATCCTACGAAGAATACAAAAAACTTGCTTAGGTCTG AGACCAAAACTAAAAAGGTGTAATTGGATCAATTCAAGGATGAAACACTCATCACTAGTT
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0787600.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCAGCTTTGGGTGCACACTCTGTGTTATTATCTCATAAGGAATGCACCAATGCATGTATAAAAGTAGGGTTTCACAG GTTTCAATCTCCTCCAACTCCAACTTCAAGACTGGTTATGCTCAGAGTACTGTCTACTGCTAGAAAGCCAGCAAGCTTCT TGTTAAGGCCTCTTCGTCATTCTCACAGTTTGGGAAAATTCAAAGGAGATTCTTCATCAACAGCTACAAACTTTACACGG ATACTTGACTTTGCCGTCAATCGGTTGCGTGTTCAAATCAAAGATTGGAGTTATTTGCGGATAATGGAAGTGGCCGGCAT ATTGGTGTGCATTTTAATGATCGTTCCCACAGCTGATGCTGTTGATGCTCTCAAAACTTGTTCTTGTTTGCTGAAGGAAT GCAGGATTGAACTGGCTAAGTGTATCTCAAACCCGTCTTGTGCTGCCAATGTTGCCTGTCTCCAAACTTGCAACAATCGA CCTGATGAGACCGAATGCCAAATTAAATGCGGGGACCTGTTTGAAAACAGTGTGGTTGATCAATTTAATGAGTGTGCAGT CTCCCGGAAGAAATGTGTACCTAAGAAATCTGACGTGGGAGAGTTTCCTGCTCCAAATCCTGATGTCCTTGTGAAGAGCT TCAATATGGCAGATTTCACTGGCAAGTGGTTCATCACTAGTGGCTTAAATCCTACCTTCGACGCATTTGACTGCCAATTA CATGAATTTCACACAGAATCCAATAAACTTGTGGGTAATTTGTCATGGAGAATACAAACTCCAGATGAAGGATTTCTTAC AAGGACAGCTGAGCAGAGATTTGTGCAAGATCCTTCTTATCCGGGAATCCTCTACAATCATGATAATGAGTATCTTCACT ATGAAGATGACTGGTATATTTTGTCATCCCAGATTGAGAATAAACCAGATGACTACGTATTTGTATACTACCGAGGCCGA AACGATGCATGGGAGGGGTACGGTGGTGCTGTTGTGTACACAAGAAGTTCAGTTTTGCCTGAATCTATCATTCCTGAACT TGATAGAGCGGCTAAGAGTGTGGGAAGAGACTTCAGCCAGTTCATCAGAACAGATAACAGCTGCGGGCCAGAGCCTTCAT TGGTGGAGAGGCTGGAGAAAAAGGTGGAGGAAGGAGAGCAAACCATTGTGAGGGAAGTTGAAGAGTTAGAAGAAGAGGTA GAGAAAGTGGGGAGGACAGAGATGACCTTGTTTCAGAGGTTGGCAGAAGGGTTCAAAGTGTTTCAAGAGGATGAGGAAAA TTTCTTAAGAGAGTTATCAAAAGAAGAAACAGAAATACTTAGCGGGCTCAAAATGGAAGCTGCTGAAGTAGAAAAACTCT TTGGACGTGCCTTGCCTATCAGGAAACTAAGATAA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0787600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MAALGAHSVLLSHKECTNACIKVGFHRFQSPPTPTSRLVMLRVLSTARKPASFLLRPLRHSHSLGKFKGDSSSTATNFTR ILDFAVNRLRVQIKDWSYLRIMEVAGILVCILMIVPTADAVDALKTCSCLLKECRIELAKCISNPSCAANVACLQTCNNR PDETECQIKCGDLFENSVVDQFNECAVSRKKCVPKKSDVGEFPAPNPDVLVKSFNMADFTGKWFITSGLNPTFDAFDCQL HEFHTESNKLVGNLSWRIQTPDEGFLTRTAEQRFVQDPSYPGILYNHDNEYLHYEDDWYILSSQIENKPDDYVFVYYRGR NDAWEGYGGAVVYTRSSVLPESIIPELDRAAKSVGRDFSQFIRTDNSCGPEPSLVERLEKKVEEGEQTIVREVEELEEEV EKVGRTEMTLFQRLAEGFKVFQEDEENFLRELSKEETEILSGLKMEAAEVEKLFGRALPIRKLR
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
CYTOPLASMIC_DOMAIN
1 97 97 - –
PANTHER
PTHR33970:SF1
57 464 408 2.8E-215 –
PANTHER
PTHR33970
57 464 408 2.8E-215 –
Phobius
TRANSMEMBRANE
98 118 21 - –
Phobius
NON_CYTOPLASMIC_DOMAIN
119 464 346 - –
Pfam
PF07137
126 366 241 1.2E-102
IPR010788
Gene3D
G3DSA:2.40.128.20
197 377 181 1.5E-69
IPR012674
SUPERFAMILY
SSF50814
203 372 170 9.76E-27
IPR012674
ProSitePatterns
PS00213
215 226 12 -
IPR022272
Coils
Coil
375 406 32 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0009507
Cellular component Chloroplast A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma.
Subterm of
GO:0046422
Molecular function Violaxanthin de-epoxidase activity Catalysis of the reaction: violaxanthin + 2 ascorbate = zeaxanthin + 2 dehydroascorbate + 2 H2O; and antheraxanthin + ascorbate = zeaxanthin + dehydroascorbate + H2O.
Subterm of
GO:0055114
Biological process Oxidation-reduction process A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
Subterm of

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0787600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…