Domain Predictions — View

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IPR016484

Source: InterPro

Description

IPR016484 is a GTPase Der.

<p>This group represents GTPase Der, also known as GTP-binding protein EngA. In Escherichia coli, EngA is involved in ribosome stability and/or biogenesis, as well as cell viability [[cite:PUB00043320]]. In Salmonella typhimurium however, EngA binds with higher affinity to GDP than GTP [[cite:PUB00043296]].</p>

This description is obtained from EB-eye REST.

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0005525 View details of GO:0005525 AmiGO InterPro QuickGO	Molecular function	GTP binding	Interacting selectively and non-covalently with GTP, guanosine triphosphate.	Subterm of GO:0032550 GO:0032561 GO:0035639

Associated Lotus transcripts 5

Transcript	Name	Description	Predicted domains	Domain count
Lj0g3v0200439.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: GTPase Der-like [Cicer arietinum] gi\|502126563\|ref\|XP_004499354.1\|	Domains G3DSA:3.40.50.300 IPR006073 IPR016484 IPR027417 PF01926 PTHR11649 PTHR11649:SF5 SSF52540	8
Lj3g3v3237920.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: GTPase Der-like [Glycine max] gi\|356542027\|ref\|XP_003539473.1\|	Domains G3DSA:3.30.300.20 G3DSA:3.40.50.300 IPR005225 IPR006073 IPR015946 IPR016484 IPR027417 IPR031166 IPR032859 MF_00195 PF01926 PF14714 PR00326 PS51712 PTHR11649 PTHR11649:SF60 SSF52540 TIGR00231 TIGR03594 cd01894 cd01895 mobidb-lite	22
Lj4g3v0037570.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: GTPase Der-like [Glycine max] gi\|356520141\|ref\|XP_003528723.1\|	Domains G3DSA:3.30.300.20 G3DSA:3.40.50.300 IPR005225 IPR006073 IPR015946 IPR016484 IPR027417 IPR031166 IPR032859 MF_00195 NON_CYTOPLASMIC_DOMAIN PF01926 PF14714 PR00326 PS51712 PTHR11649 PTHR11649:SF5 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SSF52540 TIGR00231 TIGR03594 cd01894 cd01895 mobidb-lite	27
Lj4g3v0049640.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: GTPase Der-like [Glycine max] gi\|356520141\|ref\|XP_003528723.1\|	Domains G3DSA:3.30.300.20 G3DSA:3.40.50.300 IPR005225 IPR006073 IPR015946 IPR016484 IPR027417 IPR032859 PF01926 PF14714 PR00326 PTHR11649 PTHR11649:SF5 SSF52540 TIGR00231 cd01895 mobidb-lite	17
LotjaGi4g1v0002800.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	GTPase Der; TAIR: AT5G39960.1 GTP-binding protein; Swiss-Prot: sp\|A7HYV8\|DER_PARL1 GTPase Der; TrEMBL-Plants: tr\|I1KNQ6\|I1KNQ6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0002800	Domains G3DSA:3.30.300.20 G3DSA:3.40.50.300 IPR005225 IPR006073 IPR015946 IPR016484 IPR027417 IPR031166 IPR032859 MF_00195 NON_CYTOPLASMIC_DOMAIN PF01926 PF14714 PR00326 PS51712 PTHR43834 PTHR43834:SF4 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SSF52540 TIGR00231 TIGR03594 cd01894 cd01895 mobidb-lite	27

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
mobidb-lite	MobiDBLite	1	20.00