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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0002800 |
| Transcript ID | LotjaGi4g1v0002800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | GTPase Der; TAIR: AT5G39960.1 GTP-binding protein; Swiss-Prot: sp|A7HYV8|DER_PARL1 GTPase Der; TrEMBL-Plants: tr|I1KNQ6|I1KNQ6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0002800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:598669..603781) extracted from Lotus japonicus Gifu genome v1.2.
CGAGGGATATGGAGTAATATTTTAGAGTGTGTGTGCAATACAAGTACATAAGTAACATACGTAGTAGAAAGGATAAAACG CACATAGCAAGGGAAAACAGGGAAAAACAGGGCAACGGCAGTATATAAAAAAGGTTGAGAGTTTGGAAACACAAAGAAGA CAGCAGCAGCATCCCACAAGAGCAATGCCCAGAAAAGCGGCACCCAAATTAACACCAGATCAAGCTTAAGTGAAGGAACA AAATCCAAGCACACCTACCCAGCAAATCTCTTTTGTTATTGAGCCACGCTTGCTTTGTAATTCCAGTTCCAATTATGCTG CCACGTGTTTGATAAAATGCTTCAGTAAAACTAAAACCCACACACCACACCAGTTAACAAACTATGTCTGAGTTATTCTT GCTGCTTCTGCGCCGGACCCGGAGCAAACTCAGTCCTTCTCCTAGCATTTTCTTGTTCAATTCCTCTGCGACTGCGACGA GGGGTTTTAGCAGCACCAAAAACAAGCCCCTGGATTTGGATTTCACTCAACTTCCAATTTCGAGCCTCCCCACCGTCATC ATCATCGGCCGACCTAACGTCGGCAAGTCCGCCTTGTTCAACCGTCTTATCCGTAGGAGGGAGGCTCTCGTCTACAACAC TCCGGAAGATCACGTCACCCGCGACATCCGTGAAGGTGTAGCCAAGTTGGGTAACTTGCGTTTCAGAGTGCTCGACTCTG CTGGCTTGGAAACCGAATCTACCTCCTCCTCTTCCATCCTTCACCGCACCGCTTCCATCACTGCTAATCTCTTGCCAGCC TCTCACGTCGCTCTCTTCCTCACCGATGCAAGGCAAGTACCACCAATGCACGCACGCAACTAACCAACCTTATATATTCT CAATTCTCAATTCAAACTAGTAATGTCTTTTGTTCCTTTGCAGAGCTGGACTTCATCCTCTTGATCAGGAGGTTGGAAAA TGGCTGCGGAAAAACGCACCTCAACTCAAACCTATTGTTGCCATGAATAAATCCGAGTCACTCTTCGATGCCGATGCGTC TCTCGCCGCGGCTGGTAATGAAATGTGCCGGTTAGGATTTGGGGATCCTATTGCTATTTCTGCTGAGACTGGACTCGGCA TGCATGACTTGTATCTCTCTCTCAAGCCCCTCCTTGAGGACTACATGCTTCGTGTATTGAATGTTAATGGTAACTGAACT CAACCCCCAATTCTTATTCTTAATTGCAACATTGTTTTTTACTTTGCTGCTAGCTTATTATATATAAATGTGATCAAATT GTCTTTTTTCGAGGCCACAAAGAAGCTATTTGTTATGTCGAACCAATTACTTTTTCATAACTTTTGGTGATGCAAGTTTG CAACTTTGACTTCGGTGTTACAGTGCCGTCTAATTACTTCTTTTAATTCTGCATTCAATCATAGATGAAGGTGCTCAGGA AAATAGCAACAGTGAGGACACTAGTTCCCCTGAGGCTGAAGAAAGTAAGCTGCCGTTGCAGTTAGCAATCGTAGGACGCC CCAATGTTGGTAAATCTACCTTAATGAATACGTTGTTGCAAGAAGACCGGGTTCTCGTGGGCCCGGAAGCAGGTCTGACA AGAGATTCAATCAGAACCCAGTTCGAATTTGAAGGAAGAACAATTTATCTAGTAAGTATCCGTGAATGTTTTCTACATTT CCAGTAATCTTGATAGAGTTGAAGACTGATAGATCTATGAAGGAATGTTGCTTGTAAGAGCTAAATACAAAAAGTTATTC GTTCCTCTGACCTTACTGGCGCACATTTCATTTCCCTTTCATCTGTGTGTGCAAGCCCGTGGGCTTTTGTATGTGGTGTT GAGTTTGTCAGTACAACTTAGGAAGTTTTCTCTTTCAAGTTTATAATACCCTTTATTTGCCTTGTCATGGGAGCTATTGC CCAATTTTGTCTAGTAAGTATGGTCAACTCACAACAATTTGCTATCCTTCAATTCTTTAATCTTTATTATCCTGCTGAAT ATGGTTTGCTTTATGGGTTCTATATTCTAAGTAACATTTAATCTTGAAACTTTGGTTACAATTTAAAAATATATCTTGGT TTCCTCTCATTCAGGTTGATACGGCTGGTTGGTTACAGCGGACAAAACAGGAGAAAGGGGCAGCATCCTTAAGCATTATG CAATCAAGAAAGAGTCTACTCCGGGCTCATGTAGTTGCTTTGGTACTAGATGCAGAAGAGGTATGCTACATAAATTGCAC ATTTCGGACCATAGCACATTACTGTATATCATCAGACAAGTTTGAAACTTGCTAAATTGAAATGTCATGAAGTCTATTAT TCTAATTTACTTAATGTGTTTCTATTCACAAATACTAATATAAGCTTATTAAAATATAACTGTTCTGGTATTTCATTTTT TGATTGGAAAATGTTGAATTATACTTGGATTTTGCTGATTGTGATTTGAAATACTTTTGTCATCGAAGGTTCCCTAATGC ATTGGTGGCGTGTTCTATCTAATGATAGGAACATGCATCCTATTTCATTCCCTTTTTTTATATTGGTTCAGCTTTTCTAT TTGGTATGAGACAAATAGTACTAATTGGTGAGAAGAGAGAAAAACAAATTGTAGGATAGAAAGAAAAGGAAGAGAGAAAA CACAAAGAAACCTGTGCAGTTATCTTTTTGTACGAAAGGTTTGAATTACTTTTCGTACCATTCAATATTTTCCTTATTGG TTCACTGATAGGTACCCGCATCCCTTTAGTGAGTAGCAGTTCAGTTAGAGTGTTGTAAGCGGTTTGGTTAGAATTCTGTT AGCTAATAGAGTTAGTTAGTGTAGGGGAGGAGATACCATAAATAAGGGAGTTACTATTAGTGTAGGGGAGGAGATACCAT AATAGAGTTACTATTATTGACTTTGAAGAATTGTTTCTGTCTACTGGTATCTCTACTTGTTTTCTGTGGCTTATCTACTG GATGTGCTGTCTTGGATTCAAAATCTGCTGGTGTTGCCCTGTATATGCTGATAAATTTTGCAGACTTGGAATGTGTTTTA TTTTGGGGGTATATACTAGAGTGCTTGGAAAGCATTTACATATTGCTAAATTAGCATGCGTTGGGTTGGGTCTGACTAAA GTTTTGCTTCAGTTGTAGGAGTTATTAAGCTAGTTTCTTCTCTTGACTGTTCTTGTATTCTTTTCCTTTCTAATGTTGTC CTATTTGTATTGGGTTGATGCACCCCTAGTGCTTCTCTTTAATACATATTCTTTGCCTTTCAAAAAAAAAACCATAAATA AGGGAGTGCTAAGAGGGATTGAGGATCCTTTGGATCATTTGGGATTGGGACTAGGGGAGAGAAGCTGAATAGCTGATATT CTCGAATATCTCAGCAACTGTGTACTTTCCTACATCTAGTAATATCAATGTTCTTCTTCTATTTGGGCTGGTTCTATCAT TTACCCTTAGTTGTAATTATAATGTCCATTAGTGTGTGAATGAGTGAGGTATGCTTGTATGTGTACCGTGATTCATCAGA ATAGATTTTCCTCCCATCACCATTTCTACATGCTAATCAGTAACTTCATCTTGTATTGATAAAAAATTATTGAAAAATCT ATGTTGATCAGATTATAAACGAAAGACGAAGTATGAAACATGCTGAAGTAGTTATTGCCCGACGGGCAGTGGAAGAGGGA CGCGGGCTGGTTGTGATTGTCAACAAGATGGACCTTCTAAGAGGCAAAGCATCATCGTTTGAGAAGGTTATGGAGATTGT TCCACAAGAAATTCAGACAATTATACCTCAGGTCTGCAATGCAATAATATTGTCAACATTAAGTCTAGCTGCTCAATAAA TTGGATTGCTACGCATCATGCTTTAAACTGATATTTTTAAATTAGATGCCAAAATTATTTATTTGAACATGATGGTCATG GTTCAAACAGAACAAAAAAGTCTGTTAGGCTATCAACTCATCATACTGTCCTCAGTCCTCACCATTATCTCTTACTTTTC TTTTAGGTATATATAACAAACTTCACCCATTTTTAGTATTGTGATTTAGCTTTGAGTTTTGACAATTGTCAACAGATAAC AGGAATCCCAGTTGTATTCACTTCAGCATTAGAAGGACGGGGTCGGACCGCTGTCTTGGAACAGGTCATTGATACATACG AGAAATGGTGCTCAAGATTGTCTACAGCTCGTCTTAACCGTTGGATGCAAAAGGTAATATTATTGCATTCAACATCACTT TATGTATCGGTAAAACATGCAATTGGTAGTAATTCTTTTCTCCTCCCTCTTTCGTTCAGGTTATGAGCAGGCATTCTTGG AAAGACCAGGCAGCGCAGCCTAAGATCAAATATTTCACTCAGGTCAAGGCCAGGCCACCTACATTTGTTGCGTTTCTGCG CGGGAAGACTCAGCTTGCTGACACTGACATTAGGTTCTTGACAAAATCCTTAAAGGAGGACTTTGATTTGGGTGGAATTC CTATACGGATCATGCAACGTGCTGTCACTAAGAAAGAAGTCAGTGGAAATAGCAAGAGTGGGCATTCAGCAGGCAGAGTA GCTGAAAGGATGATGTCTGACAAGAGAAGCGTCTTAGCTGAATGACATTTTTCACTTTTCATCTCTTGGTTGCCTCATCC TGCAAATAATTACCAAAATGAAAGCTTATAGTTTATTAGATGCTTACAGTAATTTTATTATTTATCAGTTCACAAGCTTG ATTCTGGGTTCTTGAACTGTGTGAAGTGATGATGAACTCAGTAACCATTGTTGCCTTGCCATCTAGAGAGGTAACCGGTC ACCAGAGCCCCAGAGATTAGAGAAAAATGACACTCCAATAGACACATGAATGAGGGCAGCCACTGCACGTTTTTTATTAA ACGAAAAAGATGAGATTGTAATGTGATTAACGCCGCACAGGTCCAGTCAAATCGATGTTAACCACCACCTAATTAGTTCA GCGATATTCAGAACTCAAAAGGTGTTGAGATCTGCTAGATCTTGAGGTATCATAGATATAAATGCTGACAACTCTATAAA ATACAAATGTAAAGGAAATGTAATTCTGTTAAGTAAACGTAAAGTGGCAAACCTTTCAGAGTTTACACATGCG
CDS sequence (LotjaGi4g1v0002800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTGAGTTATTCTTGCTGCTTCTGCGCCGGACCCGGAGCAAACTCAGTCCTTCTCCTAGCATTTTCTTGTTCAATTC CTCTGCGACTGCGACGAGGGGTTTTAGCAGCACCAAAAACAAGCCCCTGGATTTGGATTTCACTCAACTTCCAATTTCGA GCCTCCCCACCGTCATCATCATCGGCCGACCTAACGTCGGCAAGTCCGCCTTGTTCAACCGTCTTATCCGTAGGAGGGAG GCTCTCGTCTACAACACTCCGGAAGATCACGTCACCCGCGACATCCGTGAAGGTGTAGCCAAGTTGGGTAACTTGCGTTT CAGAGTGCTCGACTCTGCTGGCTTGGAAACCGAATCTACCTCCTCCTCTTCCATCCTTCACCGCACCGCTTCCATCACTG CTAATCTCTTGCCAGCCTCTCACGTCGCTCTCTTCCTCACCGATGCAAGAGCTGGACTTCATCCTCTTGATCAGGAGGTT GGAAAATGGCTGCGGAAAAACGCACCTCAACTCAAACCTATTGTTGCCATGAATAAATCCGAGTCACTCTTCGATGCCGA TGCGTCTCTCGCCGCGGCTGGTAATGAAATGTGCCGGTTAGGATTTGGGGATCCTATTGCTATTTCTGCTGAGACTGGAC TCGGCATGCATGACTTGTATCTCTCTCTCAAGCCCCTCCTTGAGGACTACATGCTTCGTGTATTGAATGTTAATGATGAA GGTGCTCAGGAAAATAGCAACAGTGAGGACACTAGTTCCCCTGAGGCTGAAGAAAGTAAGCTGCCGTTGCAGTTAGCAAT CGTAGGACGCCCCAATGTTGGTAAATCTACCTTAATGAATACGTTGTTGCAAGAAGACCGGGTTCTCGTGGGCCCGGAAG CAGGTCTGACAAGAGATTCAATCAGAACCCAGTTCGAATTTGAAGGAAGAACAATTTATCTAGTTGATACGGCTGGTTGG TTACAGCGGACAAAACAGGAGAAAGGGGCAGCATCCTTAAGCATTATGCAATCAAGAAAGAGTCTACTCCGGGCTCATGT AGTTGCTTTGGTACTAGATGCAGAAGAGATTATAAACGAAAGACGAAGTATGAAACATGCTGAAGTAGTTATTGCCCGAC GGGCAGTGGAAGAGGGACGCGGGCTGGTTGTGATTGTCAACAAGATGGACCTTCTAAGAGGCAAAGCATCATCGTTTGAG AAGGTTATGGAGATTGTTCCACAAGAAATTCAGACAATTATACCTCAGATAACAGGAATCCCAGTTGTATTCACTTCAGC ATTAGAAGGACGGGGTCGGACCGCTGTCTTGGAACAGGTCATTGATACATACGAGAAATGGTGCTCAAGATTGTCTACAG CTCGTCTTAACCGTTGGATGCAAAAGGTTATGAGCAGGCATTCTTGGAAAGACCAGGCAGCGCAGCCTAAGATCAAATAT TTCACTCAGGTCAAGGCCAGGCCACCTACATTTGTTGCGTTTCTGCGCGGGAAGACTCAGCTTGCTGACACTGACATTAG GTTCTTGACAAAATCCTTAAAGGAGGACTTTGATTTGGGTGGAATTCCTATACGGATCATGCAACGTGCTGTCACTAAGA AAGAAGTCAGTGGAAATAGCAAGAGTGGGCATTCAGCAGGCAGAGTAGCTGAAAGGATGATGTCTGACAAGAGAAGCGTC TTAGCTGAATGA
Protein sequence (LotjaGi4g1v0002800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSELFLLLLRRTRSKLSPSPSIFLFNSSATATRGFSSTKNKPLDLDFTQLPISSLPTVIIIGRPNVGKSALFNRLIRRRE ALVYNTPEDHVTRDIREGVAKLGNLRFRVLDSAGLETESTSSSSILHRTASITANLLPASHVALFLTDARAGLHPLDQEV GKWLRKNAPQLKPIVAMNKSESLFDADASLAAAGNEMCRLGFGDPIAISAETGLGMHDLYLSLKPLLEDYMLRVLNVNDE GAQENSNSEDTSSPEAEESKLPLQLAIVGRPNVGKSTLMNTLLQEDRVLVGPEAGLTRDSIRTQFEFEGRTIYLVDTAGW LQRTKQEKGAASLSIMQSRKSLLRAHVVALVLDAEEIINERRSMKHAEVVIARRAVEEGRGLVVIVNKMDLLRGKASSFE KVMEIVPQEIQTIIPQITGIPVVFTSALEGRGRTAVLEQVIDTYEKWCSRLSTARLNRWMQKVMSRHSWKDQAAQPKIKY FTQVKARPPTFVAFLRGKTQLADTDIRFLTKSLKEDFDLGGIPIRIMQRAVTKKEVSGNSKSGHSAGRVAERMMSDKRSV LAE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 14 | 14 | - | – | |
| Phobius | 1 | 3 | 3 | - | – | |
| Phobius | 4 | 9 | 6 | - | – | |
| Phobius | 10 | 14 | 5 | - | – | |
| Phobius | 15 | 563 | 549 | - | – | |
| PANTHER | 39 | 561 | 523 | 1.0E-284 | – | |
| PANTHER | 39 | 561 | 523 | 1.0E-284 | – | |
| SUPERFAMILY | 49 | 225 | 177 | 5.87E-25 | ||
| Gene3D | 54 | 224 | 171 | 2.3E-29 | – | |
| Hamap | 55 | 532 | 478 | 28.129 | ||
| ProSiteProfiles | 56 | 231 | 176 | 33.721 | ||
| TIGRFAM | 56 | 527 | 472 | 3.5E-114 | ||
| Pfam | 58 | 179 | 122 | 3.0E-18 | ||
| CDD | 60 | 220 | 161 | 5.92856E-51 | – | |
| Gene3D | 258 | 448 | 191 | 1.3E-40 | – | |
| SUPERFAMILY | 262 | 531 | 270 | 3.89E-38 | ||
| CDD | 262 | 444 | 183 | 1.52609E-64 | – | |
| ProSiteProfiles | 263 | 448 | 186 | 47.626 | ||
| TIGRFAM | 264 | 435 | 172 | 5.2E-19 | ||
| PRINTS | 265 | 285 | 21 | 1.2E-6 | ||
| Pfam | 265 | 388 | 124 | 5.3E-21 | ||
| PRINTS | 314 | 329 | 16 | 1.2E-6 | ||
| Gene3D | 450 | 531 | 82 | 3.7E-19 | ||
| Pfam | 450 | 529 | 80 | 2.4E-21 | ||
| MobiDBLite | 533 | 563 | 31 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. |
Expression pattern of LotjaGi4g1v0002800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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