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IPR018834

Source: InterPro

Description

IPR018834 is a DNA/RNA-binding domain, Est1-type.

<p>This entry represents a DNA/RNA binding domain found in the telomere elongation protein EST1 and related sequences, such as the nonsense-mediated mRNA decay pathway proteins SMG5 and SMG7 [[cite:PUB00044256], [cite:PUB00057242], [cite:PUB00057243], [cite:PUB00101150]].</p>

This description is obtained from EB-eye REST.

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 10

Transcript Name Description Predicted domains Domain count
Lj2g3v3022950.1
– Telomerase-binding protein EST1A [Medicago truncatula] gi|357493925|ref|XP_003617251.1|
Domains
10
Lj6g3v0962610.1
– PREDICTED: telomerase-binding protein EST1A-like isoform X1 [Cicer arietinum] gi|502166667|ref|XP_004513951.1|
Domains
9
Lj6g3v2018650.1
– PREDICTED: protein SMG7-like [Glycine max] gi|356546642|ref|XP_003541733.1|
Domains
10
Lj6g3v2018650.2
– PREDICTED: protein SMG7-like [Glycine max] gi|356546642|ref|XP_003541733.1|
Domains
10
LotjaGi1g1v0050400.1
– Telomerase activating protein Est1; TAIR: AT5G19400.4 Telomerase activating protein Est1; Swiss-Prot: sp|A9QM73|SMG7_ARATH Protein SMG7; TrEMBL-Plants: tr|A0A072UH06|A0A072UH06_MEDTR Telomerase activating protein Est1; Found in the gene: LotjaGi1g1v0050400
Domains
11
LotjaGi1g1v0050400.2
– Telomerase activating protein Est1; TAIR: AT5G19400.4 Telomerase activating protein Est1; Swiss-Prot: sp|A9QM73|SMG7_ARATH Protein SMG7; TrEMBL-Plants: tr|A0A072UH06|A0A072UH06_MEDTR Telomerase activating protein Est1; Found in the gene: LotjaGi1g1v0050400
Domains
11
LotjaGi6g1v0179400.1
– Protein SMG7; TAIR: AT5G19400.1 Telomerase activating protein Est1; Swiss-Prot: sp|A9QM73|SMG7_ARATH Protein SMG7; TrEMBL-Plants: tr|I1KMI5|I1KMI5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0179400
Domains
10
LotjaGi6g1v0179400.2
– Protein SMG7; TAIR: AT5G19400.1 Telomerase activating protein Est1; Swiss-Prot: sp|A9QM73|SMG7_ARATH Protein SMG7; TrEMBL-Plants: tr|I1KMI5|I1KMI5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0179400
Domains
10
LotjaGi6g1v0330200.1
– Telomerase activating protein Est1; TAIR: AT1G28260.1 Telomerase activating protein Est1; Swiss-Prot: sp|Q9FZ99|SMG7L_ARATH Protein SMG7L; TrEMBL-Plants: tr|I1M225|I1M225_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0330200
Domains
10
LotjaGi6g1v0330500.1
– Telomerase activating protein Est1; TAIR: AT1G28260.1 Telomerase activating protein Est1; Swiss-Prot: sp|Q9FZ99|SMG7L_ARATH Protein SMG7L; TrEMBL-Plants: tr|I1M225|I1M225_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0330500
Domains
10

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
mobidb-lite MobiDBLite 1 10.00