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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0179400 |
| Transcript ID | LotjaGi6g1v0179400.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein SMG7; TAIR: AT5G19400.1 Telomerase activating protein Est1; Swiss-Prot: sp|A9QM73|SMG7_ARATH Protein SMG7; TrEMBL-Plants: tr|I1KMI5|I1KMI5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0179400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:47128936..47132653) extracted from Lotus japonicus Gifu genome v1.2.
ATTGGCATTTTGTTTGATGAGATGAATGCTAGAAGTCTGGTTTGTAACATTTCAATTATTTGTTACCTAGAACCTCGAAT TGGAGAATAAGCGCCGGAGGTCAGCTCAGGCACGGGTCCCATCAGATCCGAATGCATGGCAACAGATGCGTGAGAACTAT GAAGCAATAATTCTTGAGGATCATGCTTTCTGTGATCAGCACAATATTGAATATGCTCTCTGGCAGTTGCATTATAAGAG GATTGAGGAGTTTAGGGCATATTTCAGTGCTGCTCTTTCTTCTACCAGCTCAAACTCATCTCAGGGAGGGAAAGGCCCTG CACGTCCTGATCGGATAACTAAAATAAGGCTGCAATTCAAGACTTTTCTTTCAGAGGCAACTGGATTTTACCATGACCTT ATTATGAAAATTAGAGCAAAGTATGGGCTTCCCCTTGGTTACTTTGAGGATTCAGAGAATCGGATTGTGATGGAGAAAGA TGGAAAAAAATATGCTGACATGAAGAAAGGTTTATTATCTTGTCACCGCTGTTTAATATACTTAGGTGATCTTGCTCGTT ACAAAGGAATGTATGGTGAAGGTGACTCATTAAACCGGGAGTTCACAGCAGCTTCTAGTTACTACTTTCAAGCTGCATCT CTTTGGCCTTCAAGTGGGAATCCACATCATCAGGTCTTTAGATTCTTGCATCTATTATATTTTTTGCCATTGCTTAATAT TGTTGGCTTGTGGTTCATAGTTACTATTTTCCATTGTAACGAGTTTGTTCTTTGCAGCTTGCTTTATTGGCTTCATATTC CGGGGATGAGCTGGTGGCTATTTATCGGTATTTTCGTAGTCTGGCCGTGGATAGTCCATTTACAACTGCAAGAGAGAACT TGATAGTTGCATTTGAGAAGGTAATGAATGTGAGCATGAGTTTGCTCTTGTGATATCGTGCTTTTTCACCCAGATTGTGT CAGATCGTTATTGTTTGAGTAGTATGTGTTATTCTCTGTTTTTTGGTGTTTTATGAAGCTTAATTGTTGTTCATATTTTG ATTGCTGCCTGCCCACTGAAGTTTTATTATGAGGGTGAGAGTTAGTTGATTTTAATGTTAATGTTTGATGCTGAAATGAG GTGCATTAATAAGTGGAAGTTGATACATTTCAGATTGGGTTGCAAGTCTTTAAAACATTATTTATATGTTGTGTAGATGT CCGGGATGGATTTTATGCGAGTATTTTATGTTCATAATTATATATGGTGTCATAAAAAATGCTGCGAAGAACCATCCTTT GAAAGGTAGTCTGTTGATCACTTGATATGTACCATGGATCACGTTGGGGCTTAAAAAATGTCCTTTAATATGGTTTATAT GTTCATTTGTGTTTGCCACCCACTTGTTTTCATGCATTTGTCTAATTTATTGTATATGACTGATCTTTTGTCATTATATT AGAAGTATGCTGACTACTAGTTACTTTAATAATTCCATTATAGAATCGTCAAAGTTTCGCTCAGCTTCCTGGAGATGCTA AATCTCTTGCAGTCAAAGAACCTTCTGGGCGACTAGCTGGCAAAGGAAGAGGAAAAGTGGAAGCAAAACTTGCAACAAGG GGTACTGGTGTTGATACCAGTCCTAGAGCAGATGGAGCATCCAGTATACAAGAGACTTACAAATTCTTCTGTACTCGGTT TGTCCGGCTAAATGGAATATTGTTTACACGAACAAGGTGTATATTCTTGACATTTTCACTATGTCTTTACATGCATGATA CTAATGATTAACATGTTCTAACTTCCCCCCTTTGTTTTCTCATATACCTTGTCGATAGCCTCGAGACCTTCACTGAAGTT CTTGCTCTTGTTAGCACTGGTCTGCGGGAACTTCTGTCTTCAGGGCAAGATGAGGAGCTGAATTTTGGCTCTGATATTTC TGAGAATAGACTTGCCATTGTCAGAATTGTCTGCATTCTTGTATTTACAGTTTATAATGCGAATAAGGAATCTGAAGGTC AAACTTATGCAGAAATTGTTCAGCGTGCTGTTCTGCTTCAGAATGCATTTACTGCAGCTTTTGAATTGATGGGTTACATA ATAGAGAGATGTGCAGAGCTGAGTGATCCTTCTTCTAGTTATCTCTTACCTGGCATTCTGGTTTTTGTTGAGTGGTTGGC TTGTTATCCAGATCTTGCTAAAGGCAATGATTTGGATGAGAATCAGGAAAGTTTGAGATCAAAATTTTGGAATCATTGTA TATCCTTCTTGAATAAATTGCTTTCAGTTGGGCCTGTGTCTGTTTTTGATGATGAAGAGGATACTTGCTTTAATAACATG AGCAGATATGAGGAAGGGGAAACTGAAAACCGACTTGCTTTGTCGGAGGACTTTGAGTTAAGGGGATTTATTCCGCTTCT CCCTGCACAAACCATCTTGGATTTTTCAAGGAAGCATTCCCTTGGAAGTGATGGTGATAAGGAAAGAAAAGCCCGGGTCA AAAGAATTTTAGCTGCAGGGAAGGCTTTAGCAAGTGTTGTTCTGGTTGATAAAACAATGATATATTTTGATTCAAAGACA AAGAAATTTCTCATTGGTGTTCAGCCTCAATCCTCAGATGATTTTGTTCAAGCCGCCTATTCCGTCATTCAGACCGCAGA AGAATCACAAGAAAAACCAGCAGCAGATAAATCAAAGGTGGAAGTTGTTCAGTCAAACCAACATCAGTATATGGAAGGAG ATGAGGATGATGAAGTTATTGTTTTCAGGCCTATGGTGTCTGAGATGCGAGCTGATGTGGCTGTCTCATCATGGACACCC CATGAGGGTATGGAGCCTGTTCTAAAAGCTTCAGGAGGAGATTTAAAATTTCATGTTAACTCTACTTCTAATCCACTCAA CAATCTACATCATCAAACAATGCCGATTTCTGTTAGTGGTATGATTCCTCAACACCTGCAATCAGTTCAGCCGCATACAT CAAGGTGGCTGGATGAGGAAATTTCTCTCGCTAACAATTTAAAAGGTCTTGGGTTATTTGAGAATGGGCATGTGATGAAA CCTAGCTTACAAGAGGCTATAGGCATCTCAAATCATGTCGGACTTCCTATTCCTATCCAACAATCTATTGGTGTGGATAC TAATGTGTTTCATGGTCTCTCCAAAGCTTCAGAATCTGTGGTACCATCCAAAATTGACGCTATTGCATCTTCAGGAGTAG TTTCTGATGCTTTTGCAGTGAAGACATCAGCCATGCAACCTGGTATGAGAAAAGCCCCTGCCCCAGTCAGTCGACCTGCT AGGCACCTTGGACCTCCTCCTGGTTTCAATCATGTTCCTTCTAAACAAAGTATTGAATTCACTACTTCAGATTCAATGAG TGGGAATCCAATTCTCGATGACTACAGTTGGTTGGATGGGTATCAATTGCAGTCATCAACCAAAGGCTTAAGCTCGAATG GTTCTCTTGCTTATTCTCAGTCAAATTCTTACCAACTCAGTAACAATGGCTTGAACGGGAATATCAGCTTTCCATTTCCT GGAAAACAAGTTCCATCTGTACCTCTTCAGGTGGAGCAACAGAATGTTTGGCAAGATTATCAACCTTATGAGCTTTTAAA TTCACACCATGATCAACAGCTTCAGCCACAACAGCTCACAACTGGAACTCAACAGTTTTCTCCTCTGCCTGAGCAATTTC AAGGACAGTCAATCTGGACAGGTCGTTACTTCGTGTGA
CDS sequence (LotjaGi6g1v0179400.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCGTGAGAACTATGAAGCAATAATTCTTGAGGATCATGCTTTCTGTGATCAGCACAATATTGAATATGCTCTCTGGCA GTTGCATTATAAGAGGATTGAGGAGTTTAGGGCATATTTCAGTGCTGCTCTTTCTTCTACCAGCTCAAACTCATCTCAGG GAGGGAAAGGCCCTGCACGTCCTGATCGGATAACTAAAATAAGGCTGCAATTCAAGACTTTTCTTTCAGAGGCAACTGGA TTTTACCATGACCTTATTATGAAAATTAGAGCAAAGTATGGGCTTCCCCTTGGTTACTTTGAGGATTCAGAGAATCGGAT TGTGATGGAGAAAGATGGAAAAAAATATGCTGACATGAAGAAAGGTTTATTATCTTGTCACCGCTGTTTAATATACTTAG GTGATCTTGCTCGTTACAAAGGAATGTATGGTGAAGGTGACTCATTAAACCGGGAGTTCACAGCAGCTTCTAGTTACTAC TTTCAAGCTGCATCTCTTTGGCCTTCAAGTGGGAATCCACATCATCAGCTTGCTTTATTGGCTTCATATTCCGGGGATGA GCTGGTGGCTATTTATCGGTATTTTCGTAGTCTGGCCGTGGATAGTCCATTTACAACTGCAAGAGAGAACTTGATAGTTG CATTTGAGAAGAATCGTCAAAGTTTCGCTCAGCTTCCTGGAGATGCTAAATCTCTTGCAGTCAAAGAACCTTCTGGGCGA CTAGCTGGCAAAGGAAGAGGAAAAGTGGAAGCAAAACTTGCAACAAGGGGTACTGGTGTTGATACCAGTCCTAGAGCAGA TGGAGCATCCAGTATACAAGAGACTTACAAATTCTTCTGTACTCGGTTTGTCCGGCTAAATGGAATATTGTTTACACGAA CAAGCCTCGAGACCTTCACTGAAGTTCTTGCTCTTGTTAGCACTGGTCTGCGGGAACTTCTGTCTTCAGGGCAAGATGAG GAGCTGAATTTTGGCTCTGATATTTCTGAGAATAGACTTGCCATTGTCAGAATTGTCTGCATTCTTGTATTTACAGTTTA TAATGCGAATAAGGAATCTGAAGGTCAAACTTATGCAGAAATTGTTCAGCGTGCTGTTCTGCTTCAGAATGCATTTACTG CAGCTTTTGAATTGATGGGTTACATAATAGAGAGATGTGCAGAGCTGAGTGATCCTTCTTCTAGTTATCTCTTACCTGGC ATTCTGGTTTTTGTTGAGTGGTTGGCTTGTTATCCAGATCTTGCTAAAGGCAATGATTTGGATGAGAATCAGGAAAGTTT GAGATCAAAATTTTGGAATCATTGTATATCCTTCTTGAATAAATTGCTTTCAGTTGGGCCTGTGTCTGTTTTTGATGATG AAGAGGATACTTGCTTTAATAACATGAGCAGATATGAGGAAGGGGAAACTGAAAACCGACTTGCTTTGTCGGAGGACTTT GAGTTAAGGGGATTTATTCCGCTTCTCCCTGCACAAACCATCTTGGATTTTTCAAGGAAGCATTCCCTTGGAAGTGATGG TGATAAGGAAAGAAAAGCCCGGGTCAAAAGAATTTTAGCTGCAGGGAAGGCTTTAGCAAGTGTTGTTCTGGTTGATAAAA CAATGATATATTTTGATTCAAAGACAAAGAAATTTCTCATTGGTGTTCAGCCTCAATCCTCAGATGATTTTGTTCAAGCC GCCTATTCCGTCATTCAGACCGCAGAAGAATCACAAGAAAAACCAGCAGCAGATAAATCAAAGGTGGAAGTTGTTCAGTC AAACCAACATCAGTATATGGAAGGAGATGAGGATGATGAAGTTATTGTTTTCAGGCCTATGGTGTCTGAGATGCGAGCTG ATGTGGCTGTCTCATCATGGACACCCCATGAGGGTATGGAGCCTGTTCTAAAAGCTTCAGGAGGAGATTTAAAATTTCAT GTTAACTCTACTTCTAATCCACTCAACAATCTACATCATCAAACAATGCCGATTTCTGTTAGTGGTATGATTCCTCAACA CCTGCAATCAGTTCAGCCGCATACATCAAGGTGGCTGGATGAGGAAATTTCTCTCGCTAACAATTTAAAAGGTCTTGGGT TATTTGAGAATGGGCATGTGATGAAACCTAGCTTACAAGAGGCTATAGGCATCTCAAATCATGTCGGACTTCCTATTCCT ATCCAACAATCTATTGGTGTGGATACTAATGTGTTTCATGGTCTCTCCAAAGCTTCAGAATCTGTGGTACCATCCAAAAT TGACGCTATTGCATCTTCAGGAGTAGTTTCTGATGCTTTTGCAGTGAAGACATCAGCCATGCAACCTGGTATGAGAAAAG CCCCTGCCCCAGTCAGTCGACCTGCTAGGCACCTTGGACCTCCTCCTGGTTTCAATCATGTTCCTTCTAAACAAAGTATT GAATTCACTACTTCAGATTCAATGAGTGGGAATCCAATTCTCGATGACTACAGTTGGTTGGATGGGTATCAATTGCAGTC ATCAACCAAAGGCTTAAGCTCGAATGGTTCTCTTGCTTATTCTCAGTCAAATTCTTACCAACTCAGTAACAATGGCTTGA ACGGGAATATCAGCTTTCCATTTCCTGGAAAACAAGTTCCATCTGTACCTCTTCAGGTGGAGCAACAGAATGTTTGGCAA GATTATCAACCTTATGAGCTTTTAAATTCACACCATGATCAACAGCTTCAGCCACAACAGCTCACAACTGGAACTCAACA GTTTTCTCCTCTGCCTGAGCAATTTCAAGGACAGTCAATCTGGACAGGTCGTTACTTCGTGTGA
Protein sequence (LotjaGi6g1v0179400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRENYEAIILEDHAFCDQHNIEYALWQLHYKRIEEFRAYFSAALSSTSSNSSQGGKGPARPDRITKIRLQFKTFLSEATG FYHDLIMKIRAKYGLPLGYFEDSENRIVMEKDGKKYADMKKGLLSCHRCLIYLGDLARYKGMYGEGDSLNREFTAASSYY FQAASLWPSSGNPHHQLALLASYSGDELVAIYRYFRSLAVDSPFTTARENLIVAFEKNRQSFAQLPGDAKSLAVKEPSGR LAGKGRGKVEAKLATRGTGVDTSPRADGASSIQETYKFFCTRFVRLNGILFTRTSLETFTEVLALVSTGLRELLSSGQDE ELNFGSDISENRLAIVRIVCILVFTVYNANKESEGQTYAEIVQRAVLLQNAFTAAFELMGYIIERCAELSDPSSSYLLPG ILVFVEWLACYPDLAKGNDLDENQESLRSKFWNHCISFLNKLLSVGPVSVFDDEEDTCFNNMSRYEEGETENRLALSEDF ELRGFIPLLPAQTILDFSRKHSLGSDGDKERKARVKRILAAGKALASVVLVDKTMIYFDSKTKKFLIGVQPQSSDDFVQA AYSVIQTAEESQEKPAADKSKVEVVQSNQHQYMEGDEDDEVIVFRPMVSEMRADVAVSSWTPHEGMEPVLKASGGDLKFH VNSTSNPLNNLHHQTMPISVSGMIPQHLQSVQPHTSRWLDEEISLANNLKGLGLFENGHVMKPSLQEAIGISNHVGLPIP IQQSIGVDTNVFHGLSKASESVVPSKIDAIASSGVVSDAFAVKTSAMQPGMRKAPAPVSRPARHLGPPPGFNHVPSKQSI EFTTSDSMSGNPILDDYSWLDGYQLQSSTKGLSSNGSLAYSQSNSYQLSNNGLNGNISFPFPGKQVPSVPLQVEQQNVWQ DYQPYELLNSHHDQQLQPQQLTTGTQQFSPLPEQFQGQSIWTGRYFV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 919 | 919 | 0.0 | – | |
| PANTHER | 1 | 919 | 919 | 0.0 | – | |
| Gene3D | 1 | 215 | 215 | 3.8E-58 | ||
| SUPERFAMILY | 2 | 546 | 545 | 7.59E-86 | ||
| Pfam | 21 | 143 | 123 | 1.9E-18 | ||
| Pfam | 156 | 491 | 336 | 7.5E-67 | ||
| MobiDBLite | 767 | 797 | 31 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi6g1v0179400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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