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IPR020057 is a Large ribosomal subunit protein bL25, beta domain.
<p>This entry represents a domain with a mainly β-strand structure found in the large ribosomal subunit protein bL25 and similar proteins predominantly found in bacteria.</p> <p>The bacterial large ribosomal subunit protein bL25, previously known as ribosomal protein L25, is bound to 5S rRNA along with uL5 and uL18, forming a separate domain of the ribosome [[cite:PUB00014122], [cite:PUB00080279]]. The solution structure of protein bL25 uncomplexed with RNA shows two significantly disordered loops and a closed β-barrel domain with a complex topology that has significant structural similarities to the N-terminal domain of the Thermus thermophilus ribosomal protein TL5, to the general stress protein CTC, and to the C-terminal anticodon-binding domain of Escherichia coli glutaminyl-tRNA synthetase (GlnRS) [[cite:PUB00014120], [cite:PUB00014121]]. GlnRS contains a duplication consisting of two L25-like β-barrels domains with the swapping of N-terminal strands.</p>
This description is obtained from EB-eye REST.
| Transcript | Name | Description | Predicted domains | Domain count |
|---|---|---|---|---|
| – | PREDICTED: 50S ribosomal protein L25-like [Cicer arietinum] gi|502152915|ref|XP_004509151.1| | 7 | ||
| – | PREDICTED: 50S ribosomal protein L25-like [Cicer arietinum] gi|502107272|ref|XP_004493212.1| | 12 | ||
| – | 50S ribosomal protein L25; TAIR: AT4G23620.1 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain-containing protein; Swiss-Prot: sp|Q2G6G9|RL25_NOVAD 50S ribosomal protein L25; TrEMBL-Plants: tr|A0A151TA12|A0A151TA12_CAJCA 50S ribosomal protein L25; Found in the gene: LotjaGi1g1v0647700 | 10 | ||
| – | 50S ribosomal protein L25, putative; TAIR: AT5G66860.1 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain-containing protein; Swiss-Prot: sp|B2IG64|RL25_BEII9 50S ribosomal protein L25; TrEMBL-Plants: tr|A0A0L9TG22|A0A0L9TG22_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0108000 | 10 |
A list of co-occurring predicted domains within the L. japonicus gene space:
| Predicted domain | Source | Observations | Saturation (%) |
|---|---|---|---|
| cd00495 | CDD | 1 | 25.00 |