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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0108000 |
| Transcript ID | LotjaGi4g1v0108000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 50S ribosomal protein L25, putative; TAIR: AT5G66860.1 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain-containing protein; Swiss-Prot: sp|B2IG64|RL25_BEII9 50S ribosomal protein L25; TrEMBL-Plants: tr|A0A0L9TG22|A0A0L9TG22_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0108000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:15173467..15178595) extracted from Lotus japonicus Gifu genome v1.2.
GTCGTCAGTCAAGTTAGTCCTTGATTCAGTTTTCCGTTGGTCCCTCGGACGGAAAAGTCCAAATATCACAATTTTTGCCA CATTGGCTTGACACGTCATCAATGACTCACATCTTATTATGTCAATTTAGTCCCTAAAAAAATCCTCTAATTAAATAAAT CTAAAATAAGTCATCTGTAAAAAAAAATGATTTTCCCCAAAAGTGATTTTACAACTGGTATAGCAATACTATGAATAAAA AAATGATTTTTCCCAAAAGTGATTTTGCAATTGGTATAGCAATATTATGAATAAAGTTACTGCTACTGATGGCATTGACA ATGAATTAATTTATTACCATTAGATTTTTTTCCAGGGAATTGGAATTCATAAAATGTTGTAATTCAACTCAATGTCAGAT TGCAAGCACTGGTGGTCAAGCAAATTCAACTTAAAAAATGCTGTGCTTCAATTGGTTACTTCCTTGAGAATTCATGTGAC GGTGTCTTTCTTTTCTTCAGATTTCCTGAACTCGTGGTCAAAGCTAGGAAATCGCCACTCAAGAATATGTTTTGTGTGCT CGACATGTACGCCGTCGCCATGACAACCACTCTATGGCCGGGTAATTTACTGAGTTTCTTCTCACCAGATCTGAGTTTCT TCTCACCAGATCTGAGTTCCCTCCTTTCTCTCATCCCAATCTGCGTTCGAGCGAAAGGTGTCCGAGATGACGACAGAGGT GAAGGATAACTAACCCCCTTGGCTTGGTGGTGGAGGATGAGGCCACAATGGAGAGGAAACCAGATGAAGAAACCCAGAGG AAGATCTAGTCCGATGGGAGATGGTGGTGTTGATGTGATTGGATTTGGTTGGCTCACCTCCTTCATCCTTATCTGTTCTG GTTTAGGTGTTGTGAAGGACAAGCAAAAATCGGATCTAAACCCAAAGTGAGAAGATGAGAGAGAGAGAGAGAGAGAGAGA GAGCTGGGTAAGAAAGCAAGTATTTCTTGTCAAAGAAGATGAAAATGTTTATTTTTGGGTTTTCTGGGTTAGATGATGAG ATGATGATGAAGATGTATAAAGAAGATGAACATTCAGAAGTTTTTTCTTTTTAAATTTTCCGAGGGACTAAATTGAGATA ATAAGATGTGAGTCATTGATGACGTGTCAAGCCAATGTGGCAAAAATTGTGACATTTGGACTTTTCCGTCCGAGGGACCA ACGGAAAACTGAATCAAGGACTAACTTGACTGACGGCGACAAGTTCAGGGACGAAAAAAGACTATTTTCAAAGTATGAGG ACCATTCCGTCTCAAGTGTACACAATCAGGGACCAGAATGGCTATTTACTCTTATTTTTTGTCAACAACCTAATAGGATT TTGAAATAATTAAAAAATCAAAAGAAGCCCAATTTGGGCCTGGAACCTAAAACCCTTGATCTCAAAACCCCATTTTCGCA TTGCAGGGATTGACGGAGAAACAAAATCATGGCGCAGTGGTGTCGCTCCTCTGCCGGCCACCTTCGCACGGCGGCGGCGA GCCGGTTATCCTCACCAGCATTCCAGCGCGGTCACTCTTACCATACGATCCAAGCCATCCCGAGAGAGCACTCTGGTAGC GGCGTCGCAGCCAGGGACAGAATGCAAGGTCGAATTCCGGCCGTCGTGTTCTTACAGGACCTTCTCAGCAAAGACGCCGG CAACCGATCGGCGGCGAAGAAGCACTTGCTCACCGTCGAGAAGAAGCAGATTAAGGCCATATTGAACTCCGTTCAAACTT CTTTCTTCTGCTCCACCCGTTTTCCGCTCCAGATTCGTGCTGGATCCGGATCCTCTCATTTGGTTGAATCTGGAACTGTG CTACCTGTTAAGGTTTTTCATTTTCCGCTTTGAATCTTCGATTTTCTGTTTTGTTTATTGAAATATTTGAATTCTGATTT TAGGTTTTGTTTGTTTGTTTGGTAGATTCATATGGACCAAGAGAGTGGGCAGATTTTGAATTTGGTGTTTGTTTGGGCTG AAGAGGGGATGAACTTGAAGGTGGATGTGCCTGTTGTTTTCAAAGGAGAAGATGTTTGTCCAGGTCTTCAGAAAGGTAAC ACTTGTTTATTTGATTGTTATGGAACGTTGTAATTTAGGCTTCATTTGATGTGTGTGGAGTTTAGGGTGAATGAAATAGG CAATGCATGAATAGAGCACAATGGATTTACTGAAGTTCTTGGTTGTTTGTCTTGTTGGAATTAAACCAAGAGAGAAAATA TTGTCAATTAAATGAGATAAATTTTTGTGCTCAGGTGTAAAGGGATGCATAAATAGGACAGTTGATTTTAACTATGTCTT GTTACTATGTGAGATTATGCTAAAAATGCTCCATATGTATATGAAAATGCCACCAAACCCAAAAAAAGTAGAAGTGCAAA GATAATGAAGGAAAATGCAACTAAAACCTAATGAAGTATGCATAAACGTGTGAAAATATGCTGTAAAACTATATAAATTG CACACACATCTGGAGAACAGATTGGAGGTAGTGTCTAGAGACTTAATGGATAGAGGTGAAGCTCTGAGACAATTGAAATT CTACTTTTCAAAGCTCAAGAACAAATAAGGAAAGCACAGATGAATGTAAATGGGCTGTATTATGAGGTTGGGTAATGGGT TTACTTAAACTCCGACTGCATGGGTAACTATTCGTGGCTCGGAGGATTAATTAAAAGTTAGCTCCTTGATATGTTGGTCC CTTTAATATCTTAGCCTTGGTGGGAGCAGTTTCTTACAAGTTGCAACTTCCTGAGAACTCTTGAATTCATCAAGTTTTCA TGTGTCCCAACACAAAGGGCTATTGTGGCTAAACCAGTAGCACATACACTGCCTATCATTCTGGATATAGTGTTGGAGGA TACTGCTATAGCGGAGCAGGATTTAGCCACGCAAAAGGTGGAGAAGCAAGGAGAGGAAAGCATCCAATGGCTAGTGCAAT TGAAAGGGAAGTTAATGGAAGCAGTCGCTTGGCAGGATATTTTTGCTATGAAAAGTTAATTCCCTACATTCAGTCTTGAG GACCAGATTTTTTTAAAGGACGGGAGCATGATAGAGCCTGAGATTCGTCCTGAGAAGATATGGATTGGGTATTGGATCAA TCAAGCCACTCACCAAGATTAGAGAGAGTTTATTCTAGGAGAGAAAGGACTACTGGGAGACAATCTGAGAGGAGGTTGGT TATGCTGAGTGGAGGATAATGGTGTCAGAAAAACAGTTTTAGATGTTAAGGTGGAGGCGCCGTCTGCATTTTTTGGGAAT CTTTCTGCCATAGGCTTGGTCTCACAGCTCTGGGAGCTGAGAGATATTTTCTTTGTCTTTTCCATTCTTCTTTGGTGTTT TTGATGTCTCAATCTCCATTTTTCTTATAAATTAAGGGCTTCCATATAGATATTACTCTTCTGGTTTACTTGTAGTGAGG GCTGAGAAACCTAATTGCATAATTAAGTCATTACCTTAAGAAAGTTGGTCATAATTAGTTGATACTTAAAAATTATCTGA ACTTTTCAAAAGTACCCTTATTTAAAAATCCATGAATTCCTCTCTCCTTTAATTTTGTCTTTCAATATTCCTCAATTAAT GTATTTTTCCACCTCAATTATCTCTTTCGATATCTCTTTACAGTTTTCAACTTCATTCCTGCCAATCACGCCAAACTTAT CCTGAAAACATAGTGCCATATTTAAACATGGTATACTAGAGATTAAGGGTAAACTTGGAAACAATTATTCAATACTTTTC ATAGATTTTCTGAAAGGAACAATAAAGTTGGAAACAATTATCTAAAATGTGACTTATGCATAAGACCAAAGGGAGCAGTA AACCTATTAATTCTAAAGACTTTGTAAAAGCTATAGGTTAAACCCACTGTTCAATCAACATGTCTTACTTTTTTTGACTG GTCAATCTTTCCAGAGAGCTATGGAAGACAAGAGAAATCCTGGGCATGTAATTTCAATTAGAAAGCAAGGAGAAAACTTG AGGATAGGTTACTGATATATAAGAGTATTATTTTTTAATGTGATTTCAATAGGTTACTTGACAAATTGATTATTATTATT TTTTAATGATATATATTAATGATGTGTTCAGCTTTCCAGCTTTCAATCATCCTTCCTATCACTTATGTTTGTTATATGCC TTTGGAAGACTGCTGTTATGTTTGGGTCAATTGACTTTCATTTCATTATTTTTAAAATGCTAGGCTGTCTTCCATGAAGA ATCAACATTCACAATTTATGCATAATGACTTGGTAGCAGTCTTGATTTGCTGATTTCATGTCGGACAGAATTTAATGTGG TTCTAATATGAAATTGGTTTAATCTTTTTATGCCATTACAGGGGGATTTTTGAATAAGATCAGAACTAGTCTAAAATTTC TTTGTCCATCTGAGCACATTCCTTCAAAAATTGAGGTGGATGTGAGCAACCTAGATATTGAAGATAGGATATTCATGCGT GATATTGAGGTTCATCCATCCTTGAAGCTTCTGAGCAAGAATGAAAACATGCCCATCTGTAAAGTGGTTCCAACAAGTTT GGGAAATCAAGCACCTGTTGATGAGTGATCACCGAAGCAACATGGGAGATTCCACAAAGGCATTCAATGGGAGAAATGCA GAGATGCAATTTTCAAATAAACAGGGTTAATACCCTAATTTGATATGGTGGCAGTGACCAGTGCAAGCACCTATAATGTT AGTACTGTTATGTGTTGGACTTGATTAGCGTTTCAATATAGGTTGCTGTTGATTTTGAATGCATTAATGATTTATTCAAT CTTTGATGGCCTGTACGAGTTAGATATTTTAGTTTATGAACATGGACTAGGCATGCAGTAGCATCTGGATACAAGTAACA CATTGGCATTGGAGACACAATTTGTAAGCTGCAGGTCTCTCAATATGGCTTTTTCTGAAGAACTAACTTAGATCGACTGA ATTTCCCTTTAGAAGTCTGTTTCTTCTTTGATTTTGTTTAGTGCAACGTGAGTGACTTTCATCCGAATTCATAAGAAGAG TTTCTGTATCTTTGATGTGAGTTTAAACATTTGTCTGTTGTGTCAATGTGATATGCCCCAAGTTGATGCAAGGGCTTGAT GGATCGTCT
CDS sequence (LotjaGi4g1v0108000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGCAGTGGTGTCGCTCCTCTGCCGGCCACCTTCGCACGGCGGCGGCGAGCCGGTTATCCTCACCAGCATTCCAGCG CGGTCACTCTTACCATACGATCCAAGCCATCCCGAGAGAGCACTCTGGTAGCGGCGTCGCAGCCAGGGACAGAATGCAAG GTCGAATTCCGGCCGTCGTGTTCTTACAGGACCTTCTCAGCAAAGACGCCGGCAACCGATCGGCGGCGAAGAAGCACTTG CTCACCGTCGAGAAGAAGCAGATTAAGGCCATATTGAACTCCGTTCAAACTTCTTTCTTCTGCTCCACCCGTTTTCCGCT CCAGATTCGTGCTGGATCCGGATCCTCTCATTTGGTTGAATCTGGAACTGTGCTACCTGTTAAGATTCATATGGACCAAG AGAGTGGGCAGATTTTGAATTTGGTGTTTGTTTGGGCTGAAGAGGGGATGAACTTGAAGGTGGATGTGCCTGTTGTTTTC AAAGGAGAAGATGTTTGTCCAGGTCTTCAGAAAGGGGGATTTTTGAATAAGATCAGAACTAGTCTAAAATTTCTTTGTCC ATCTGAGCACATTCCTTCAAAAATTGAGGTGGATGTGAGCAACCTAGATATTGAAGATAGGATATTCATGCGTGATATTG AGGTTCATCCATCCTTGAAGCTTCTGAGCAAGAATGAAAACATGCCCATCTGTAAAGTGGTTCCAACAAGTTTGGGAAAT CAAGCACCTGTTGATGAGTGA
Protein sequence (LotjaGi4g1v0108000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAQWCRSSAGHLRTAAASRLSSPAFQRGHSYHTIQAIPREHSGSGVAARDRMQGRIPAVVFLQDLLSKDAGNRSAAKKHL LTVEKKQIKAILNSVQTSFFCSTRFPLQIRAGSGSSHLVESGTVLPVKIHMDQESGQILNLVFVWAEEGMNLKVDVPVVF KGEDVCPGLQKGGFLNKIRTSLKFLCPSEHIPSKIEVDVSNLDIEDRIFMRDIEVHPSLKLLSKNENMPICKVVPTSLGN QAPVDE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 244 | 244 | 5.3E-121 | – | |
| PANTHER | 1 | 244 | 244 | 5.3E-121 | – | |
| SUPERFAMILY | 31 | 238 | 208 | 1.26E-30 | ||
| CDD | 33 | 96 | 64 | 4.36291E-7 | ||
| Gene3D | 150 | 241 | 92 | 3.4E-18 | ||
| Pfam | 152 | 236 | 85 | 6.6E-22 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Structural constituent of ribosome | The action of a molecule that contributes to the structural integrity of the ribosome. | ||
| Cellular component | Ribosome | An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins. | ||
| Biological process | Translation | The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome. | ||
| Molecular function | 5S rRNA binding | Interacting selectively and non-covalently with 5S ribosomal RNA, the smallest RNA constituent of a ribosome. |
Expression pattern of LotjaGi4g1v0108000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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