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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0647700 |
| Transcript ID | LotjaGi1g1v0647700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 50S ribosomal protein L25; TAIR: AT4G23620.1 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain-containing protein; Swiss-Prot: sp|Q2G6G9|RL25_NOVAD 50S ribosomal protein L25; TrEMBL-Plants: tr|A0A151TA12|A0A151TA12_CAJCA 50S ribosomal protein L25; Found in the gene: LotjaGi1g1v0647700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:120539716..120543534) extracted from Lotus japonicus Gifu genome v1.2.
CACATTTATACCTTCATTTAATTATGATGTACCAATTTTATCACTAAAATAAAAAGCAAACCGCACTTCAATATTAATTT TGGTCAGGTTCTTGAGTGTAGTGGGTGTATTCACATTGTCACAGCACAATCCTCACCCCACCAAAAACCCTTCCCACTTC CCACTTCACTCCCAAAACCCCAAACTAAGCACAAATGTATCTCCACCGCCACATCCTCACCAGAGCCTCCGTGCACCGCC GCCACTTCTCACAAGCCGCCGCCGCACTCCTCCACCCTCCGGAGCCGGAGCAGTTGACGTACCTTGAAGGCCTTCCGAGG CCGAACCCAAAGCACGACGAGACGATCCTCGCGATCCCTCGCAAAGAGTCCGGGTCGAACATCTCGGCGAAGGAGCGCAA AGCGGGGCGGGTCCCCGGCATCGTGTTCGAGCAAGAAGACGGCCAGCACGGTGGCAACAAGCGCCTCATCTCCGTCCGTA GAGACCAGATCAGGAAGCTCGTCACGCATCTCGGCCGCTCCTTCTTCCTCTCCCGCCTCTTCCAACTCCATGTCCTCTCC GACTTCGACTCCGATGAGATCATTGAAAATGTTCGCGTTTTGCCCCACCAGGTAACCCTATCTGAATCCTCACATTCCAA TTGCTGTTAAGGTTACAGTGTGATATTTGAGATTGTGAGGGAATTGGTGTGGGAATTGAAACTGGGTTTGTGAATTATTT CAATGTTTATTGTTATTTGAAGATATGTGATTCATGAGAGAATCTCCTTGCATCGTCATCTTCCTTTGTATTATGATAGT GTTTGGTGCAATGAAATTCTGGTCTCTGTTTGATGCATATTGAATGTAGGGTAAAAGGTAAAACTAAGTGGTACATTTTG GTTCCATGGAAAAGGGTGGAAGAATCAGAGAATGGAACTTTTCCCAAGTCATATTGATATATTTGATGTGGATTTTGGGG CTTTGATTTAGGGTAGTTAACACAACTACAAGCTTCTTTTGATTTGTCGTTGTAAAAACTTGGGTGTATCCTTTTGCTTT TATGATAACTAAGCCTGTTGTGTGAGTTTAATAGTTGTGAGTTCTTTTGTGGGGTCTTATGAATAGACTTGTGGACGCAT TGATATTGTGGGTTCGTATTGAACATTTTGTCTTTTTGGAAATTTCCTAGATTCATTTGCAAGCTGGAACAGATGCACCG TTGAATGTCACCTTTTTAAGGGCTCCATCAGACGCATTGTTGAGAGTTGACGTTCCTCTTGTATACAGAGGAGACGATGT TTCCCCTGGGCTAAAGAAAGGTTTGCAGCTTGCATAAATGGAATGTGTATTGCATTCATGTTTTAATTTTCCGCCAATGA ATTTTATTTGTTATATTAACTTGCTGCTGTGCTGCATGACACCACCTCCCTATTTCTATGAAATTTTGTGTGTTGGAATC TTTTTGTGATTTTGTTAGTATTCTGTTTGATTGACACTCATCTGTCTAACTTTTGGAGGCAAGAGAAAAAGAAGCTTGAG CATTAAGTGTAACAAGGTAACTCAATGATCATTGCCAAATTTTATCAACTTAGCTTCAAAACTTTCAGGGCAAGTCTACA GATCTGTAATGTATAGATTGGATTTAAAATCGTGCTAGGTGGTAAGATATTTATGAACTTAATGATCCTTGCCAGATTCT ATCAACATAGCTTCAAAACTTACAAGGCAAGCTACAGGTCTGTATAGGTAGAATTTGATGCTCACAAGGCTTAGGCTAGG TGGTAAATGCAATGGATTTTGTTCTTTTGAAAAATCTTGTCGTGGTTTCTGTTTCAAATGGCTGTCTATGCAAAGCTTAG TGTGGCAAAGTGCTGGTGTACATTCTTTTTTATAATGATAATTGGTATTTGGTAGATAAATAGGTCTAAGAGTGAGTTTT ATTTGCCAAATAAAAAAGCTCAACTATAATTGAAGAGGGATGGCCCAGTGCATGAGGCTCATAACATTTGGGGAGAGCTA ATTATACACCATCATCTGTTGTTTCTAGTTGTTGAGTTGTTAAATACAAATAAATATTTGCTTGGTTTGAGAACAATTTC AATCCTCTGGGGAATTATGCTGATTATATTTAGAAGCATAATTTATTGGTAAATTTTGAAAGCCCATTCTGCATTGGATT GACTATGGTTGAAAATATGATCTGATTCATGCAACACATAAGATATTTTTGTAACTTATAAGCCTACAAGTAAATTAGCA TGTTTTTAAGGGTGTGTTTGTAAGTTGAGTTTTGAAGGGGAGGAAAGAGAAGAGGGAGGCTTATAAGAAGCCATCCCCTT GTTTGGGAGATTTTAAAAGAGGGGGGGAGGAGGGTTTGGGGTATTTCTAATAAGTAATAACTCTCCACGACCCCTCCAAA ACCAACTCTTAGTTATATTTTTTGGCTCCCCCAAATTGGGGGGGGGGGGACTTCCAAACAAGGGAATGACTTACTCCCAT CTCTGTCTCTTGCCATCCTGTTCCCTTCCCCTCAAAGCCTTCCCATTCCCTAAAAACTCCCAAACAAAGCCTAAAGTGCC TTATGTCCAGGTTATTATTACAAGGATAGAAGACTACTTTTGTCAGATAATTATAGTTATTATGGAGCCATTCTGTTTTA GGACATGTGCCTAATTTTTTATGGTGCAAAGTGAACTGTCATTTTTGAACATTTCTGCTTTCTAAATGACATTCGTGCTA CTTGGATGTATGTATACTAATGTCTGCACGTTATCAAAATAACTTTTTGAAGTATTTTGTTTTGTGTTTATAATGTTTTA CTTGGCTGAGTATTATTCATCCCTTTACATATTTGGTCAGGTGCTTCTTTGAATACCATCAGAAGGACTGTTAAGTACTT ATGCCCTGCAGACATTATTCCCCCATATATTGACGTGGATTTAAGTGAGATGGATGTGGGCCAAAAGTTGGTAATGGGAG ATCTCATTGTTCATCCTGCACTAAAACTTCTTCACTCAAAAGATGAACCTGTATGTAAAATTATGGGCCAAAGGGTTTCT GAACAACAACCACCAAAGAAATCTAAGTAACTATTTATTGTATCTTTGGTGGTTGTTACTGCTACACTGAAGCATTTTTT AGCTAACATGTAACATCGGCGGGCATCTTATTAGTTGATTCTTGGCAGCAGTGAAGGACACGGTTTTAGAATTCCGATGT TAGGTTTTTTTGTGAGCCTCCTCTTCTATGCCTATTCTGTTCCTTCCCACCTTTCAATCCTCTGTTTCTGCCTTTTCTTT TGGCAAAAATGGATAAAGTAATTGGGAATGAGAAAAGGAAGTTTATATATTGAGATTATATTTGAAATATGGATATTTCT GTTTCTTATGGATGTTTCGGTTTTTATCCCTCAGTAGGCTGAGGGATATCACTGAAGTTCTCCCTCTTGTCCTTAATAAA TATTTTATGCCACCTATGTACATGGATAGTGTTCAAGTGACTTTGTCTTGTGTCTTTTATGAGTTCACATTTCTGACATG GAGAACGATGATTGTTTGGCTCTTCATGCCCCCTCGCTAACCTTGCACCAGAAAATAAAAGAAATCCGAGAGGTCAAGAG AAAGAAAATAAGCATTAGGGAGAGACTGGACACCCGTGTGTGGGGTCCAAAGAATAACTAGGCGCGTGTTTGGGTTTTTG TTAAATTTAATGTTTATACGTATTGAATGTTGAATTAAAATTTTGCTTCTCTTATCGAAAATTTAATGTGGTGAGTTTTA CGTTTATAAATATGTAAAACTATGTTTGTATTTATATTTATGCTAAAATATTTTCCGAT
CDS sequence (LotjaGi1g1v0647700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTATCTCCACCGCCACATCCTCACCAGAGCCTCCGTGCACCGCCGCCACTTCTCACAAGCCGCCGCCGCACTCCTCCA CCCTCCGGAGCCGGAGCAGTTGACGTACCTTGAAGGCCTTCCGAGGCCGAACCCAAAGCACGACGAGACGATCCTCGCGA TCCCTCGCAAAGAGTCCGGGTCGAACATCTCGGCGAAGGAGCGCAAAGCGGGGCGGGTCCCCGGCATCGTGTTCGAGCAA GAAGACGGCCAGCACGGTGGCAACAAGCGCCTCATCTCCGTCCGTAGAGACCAGATCAGGAAGCTCGTCACGCATCTCGG CCGCTCCTTCTTCCTCTCCCGCCTCTTCCAACTCCATGTCCTCTCCGACTTCGACTCCGATGAGATCATTGAAAATGTTC GCGTTTTGCCCCACCAGATTCATTTGCAAGCTGGAACAGATGCACCGTTGAATGTCACCTTTTTAAGGGCTCCATCAGAC GCATTGTTGAGAGTTGACGTTCCTCTTGTATACAGAGGAGACGATGTTTCCCCTGGGCTAAAGAAAGGTGCTTCTTTGAA TACCATCAGAAGGACTGTTAAGTACTTATGCCCTGCAGACATTATTCCCCCATATATTGACGTGGATTTAAGTGAGATGG ATGTGGGCCAAAAGTTGGTAATGGGAGATCTCATTGTTCATCCTGCACTAAAACTTCTTCACTCAAAAGATGAACCTGTA TGTAAAATTATGGGCCAAAGGGTTTCTGAACAACAACCACCAAAGAAATCTAAGTAA
Protein sequence (LotjaGi1g1v0647700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MYLHRHILTRASVHRRHFSQAAAALLHPPEPEQLTYLEGLPRPNPKHDETILAIPRKESGSNISAKERKAGRVPGIVFEQ EDGQHGGNKRLISVRRDQIRKLVTHLGRSFFLSRLFQLHVLSDFDSDEIIENVRVLPHQIHLQAGTDAPLNVTFLRAPSD ALLRVDVPLVYRGDDVSPGLKKGASLNTIRRTVKYLCPADIIPPYIDVDLSEMDVGQKLVMGDLIVHPALKLLHSKDEPV CKIMGQRVSEQQPPKKSK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 16 | 255 | 240 | 9.9E-102 | – | |
| SUPERFAMILY | 50 | 252 | 203 | 3.49E-31 | ||
| CDD | 50 | 156 | 107 | 7.33294E-10 | ||
| Pfam | 53 | 154 | 102 | 4.5E-8 | ||
| Gene3D | 159 | 252 | 94 | 1.5E-15 | ||
| Pfam | 164 | 245 | 82 | 1.5E-18 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Structural constituent of ribosome | The action of a molecule that contributes to the structural integrity of the ribosome. | ||
| Cellular component | Ribosome | An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins. | ||
| Biological process | Translation | The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome. | ||
| Molecular function | 5S rRNA binding | Interacting selectively and non-covalently with 5S ribosomal RNA, the smallest RNA constituent of a ribosome. |
Expression pattern of LotjaGi1g1v0647700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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