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IPR020056 is a Large ribosomal subunit protein bL25/Gln-tRNA synthetase, N-terminal.
<p>This superfamily represents the N-terminal domain, which has a β-barrel structure.</p> <p>The bacterial large ribosomal subunit protein bL25, previously known as ribosomal protein L25, is bound to 5S rRNA along with uL5 and uL18, forming a separate domain of the ribosome [[cite:PUB00014122], [cite:PUB00080279]]. The solution structure of protein bL25 uncomplexed with RNA shows two significantly disordered loops and a closed β-barrel domain with a complex topology that has significant structural similarities to the N-terminal domain of the Thermus thermophilus ribosomal protein TL5, to the general stress protein CTC, and to the C-terminal anticodon-binding domain of Escherichia coli glutaminyl-tRNA synthetase (GlnRS) [[cite:PUB00014120], [cite:PUB00014121]]. GlnRS contains a duplication consisting of two L25-like β-barrels domains with the swapping of N-terminal strands.</p>
This description is obtained from EB-eye REST.
| Transcript | Name | Description | Predicted domains | Domain count |
|---|---|---|---|---|
| – | PREDICTED: 50S ribosomal protein L25-like [Cicer arietinum] gi|502107272|ref|XP_004493212.1| | 12 | ||
| – | PREDICTED: glutaminyl-tRNA synthetase-like isoform 1 [Glycine max] gi|356536302|ref|XP_003536678.1| | 28 | ||
| – | PREDICTED: probable glutamyl-tRNA synthetase, cytoplasmic-like [Glycine max] gi|356534931|ref|XP_003536004.1| | 33 | ||
| – | Glutamine--tRNA ligase; TAIR: AT1G25350.1 glutamine-tRNA ligase, putative / glutaminyl-tRNA synthetase, putative / GlnRS; Swiss-Prot: sp|P52780|SYQ_LUPLU Glutamine--tRNA ligase; TrEMBL-Plants: tr|A0A0B2PPT7|A0A0B2PPT7_GLYSO Glutamine--tRNA ligase; Found in the gene: LotjaGi4g1v0303500 | 29 | ||
| – | Glutamate--tRNA ligase; TAIR: AT5G26710.1 Glutamyl/glutaminyl-tRNA synthetase, class Ic; Swiss-Prot: sp|O82462|SYEC_ARATH Glutamate--tRNA ligase, cytoplasmic; TrEMBL-Plants: tr|A0A0L9TZ06|A0A0L9TZ06_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0005200 | 27 | ||
| – | Glutamate--tRNA ligase; TAIR: AT5G26710.1 Glutamyl/glutaminyl-tRNA synthetase, class Ic; Swiss-Prot: sp|O82462|SYEC_ARATH Glutamate--tRNA ligase, cytoplasmic; TrEMBL-Plants: tr|A0A0L9TZ06|A0A0L9TZ06_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0235000 | 31 |
A list of co-occurring predicted domains within the L. japonicus gene space:
| Predicted domain | Source | Observations | Saturation (%) |
|---|---|---|---|
| cd10289 | CDD | 1 | 16.67 |