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IPR024934

Description

IPR024934 is a Rubredoxin-like domain.

<p>Rubredoxin is a low molecular weight iron-containing bacterial protein involved in electron transfer [[cite:PUB00000489], [cite:PUB00003266]], sometimes replacing ferredoxin as an electron carrier [[cite:PUB00008022]]. Rubredoxins possess a 45- to 55-residue domain containing one iron atom tetrahedrally coordinated to four cysteinyl residues. Structural analysis of the domains have shown them to be folded into a short three-stranded antiparallel β-sheet and a number of loops [[cite:PUB00008024], [cite:PUB00008023], [cite:PUB00018378], [cite:PUB00008767]].</p> <p>This entry represents rubredoxin-like domains, which are found in rubredoxins and related proteins, including rubrerythrins, flavorubredoxins and nigerythrins.</p>

This description is obtained from EB-eye REST.

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Molecular function Iron ion binding Interacting selectively and non-covalently with iron (Fe) ions.

Associated Lotus transcripts 6

Transcript Name Description Predicted domains Domain count
PREDICTED: rubredoxin-like [Cicer arietinum] gi|502113516|ref|XP_004494675.1| 17
Rubredoxin family protein [Theobroma cacao] gi|508718096|gb|EOY09993.1| 15
Rubredoxin-like superfamily protein [Theobroma cacao] gi|508775414|gb|EOY22670.1| 11
Rubredoxin family protein; TAIR: AT5G51010.1 Rubredoxin-like superfamily protein; Swiss-Prot: sp|P24297|RUBR_PYRFU Rubredoxin; TrEMBL-Plants: tr|I3SUV2|I3SUV2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0332100 11
Rubredoxin family protein; TAIR: AT5G17170.1 rubredoxin family protein; Swiss-Prot: sp|O26258|RUBR_METTH Probable rubredoxin; TrEMBL-Plants: tr|I3TAC3|I3TAC3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0447900 15
Rubredoxin family protein; TAIR: AT5G51010.1 Rubredoxin-like superfamily protein; Swiss-Prot: sp|P04170|RUBR1_DESDA Rubredoxin-1; TrEMBL-Plants: tr|I3SV91|I3SV91_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0422800 8

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
TRANSMEMBRANE Phobius 1 16.67