Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

IPR024934

Source: InterPro

Description

IPR024934 is a Rubredoxin-like domain.

<p>Rubredoxin is a low molecular weight iron-containing bacterial protein involved in electron transfer [[cite:PUB00000489], [cite:PUB00003266]], sometimes replacing ferredoxin as an electron carrier [[cite:PUB00008022]]. Rubredoxins possess a 45- to 55-residue domain containing one iron atom tetrahedrally coordinated to four cysteinyl residues. Structural analysis of the domains have shown them to be folded into a short three-stranded antiparallel β-sheet and a number of loops [[cite:PUB00008024], [cite:PUB00008023], [cite:PUB00018378], [cite:PUB00008767]].</p> <p>This entry represents rubredoxin-like domains, which are found in rubredoxins and related proteins, including rubrerythrins, flavorubredoxins and nigerythrins.</p>

This description is obtained from EB-eye REST.

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005506
Molecular function Iron ion binding Interacting selectively and non-covalently with iron (Fe) ions.
Subterm of

Associated Lotus transcripts 6

Transcript Name Description Predicted domains Domain count
Lj1g3v4957690.1
– PREDICTED: rubredoxin-like [Cicer arietinum] gi|502113516|ref|XP_004494675.1|
Domains
17
Lj2g3v2124630.1
– Rubredoxin family protein [Theobroma cacao] gi|508718096|gb|EOY09993.1|
Domains
15
Lj4g3v2871730.2
– Rubredoxin-like superfamily protein [Theobroma cacao] gi|508775414|gb|EOY22670.1|
Domains
11
LotjaGi1g1v0332100.1
– Rubredoxin family protein; TAIR: AT5G51010.1 Rubredoxin-like superfamily protein; Swiss-Prot: sp|P24297|RUBR_PYRFU Rubredoxin; TrEMBL-Plants: tr|I3SUV2|I3SUV2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0332100
Domains
11
LotjaGi2g1v0447900.1
– Rubredoxin family protein; TAIR: AT5G17170.1 rubredoxin family protein; Swiss-Prot: sp|O26258|RUBR_METTH Probable rubredoxin; TrEMBL-Plants: tr|I3TAC3|I3TAC3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0447900
Domains
15
LotjaGi4g1v0422800.1
– Rubredoxin family protein; TAIR: AT5G51010.1 Rubredoxin-like superfamily protein; Swiss-Prot: sp|P04170|RUBR1_DESDA Rubredoxin-1; TrEMBL-Plants: tr|I3SV91|I3SV91_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0422800
Domains
8

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
TRANSMEMBRANE Phobius 1 16.67