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IPR026741

Source: InterPro

Description

IPR026741 is a Protein strawberry notch.

<p>Strawberry notch proteins carry DExD/H-box groups and helicase C-terminal domains. These proteins promote the expression of diverse targets, potentially through interactions with transcriptional activator or repressor complexes [[cite:PUB00061734]]. Strawberry notch was first identified in Drosophila where functions downstream of Notch and regulates gene expression during development [[cite:PUB00061737], [cite:PUB00061738]].</p> <p>Protein FORGETTER 1 (included in this entry) is the A. thaliana orthologue of Strawberry notch [[cite:PUB00083119]].</p>

This description is obtained from EB-eye REST.

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates

Associated Lotus transcripts 6

Transcript Name Description Predicted domains Domain count
Lj3g3v0382760.1
– PREDICTED: protein strawberry notch-like isoform X1 [Cicer arietinum] gi|502155227|ref|XP_004509999.1|
Domains
11
Lj3g3v0938180.1
– PREDICTED: protein strawberry notch homolog 1-like [Cicer arietinum] gi|502087519|ref|XP_004488559.1|
Domains
21
Lj3g3v0938180.2
– PREDICTED: protein strawberry notch homolog 1-like [Cicer arietinum] gi|502087519|ref|XP_004488559.1|
Domains
22
LotjaGi3g1v0034000.1
– Protein strawberry notch like 1; TAIR: AT1G79350.1 RING/FYVE/PHD zinc finger superfamily protein; Swiss-Prot: sp|F4IF36|FGT1_ARATH Protein FORGETTER 1; TrEMBL-Plants: tr|A0A072TQ60|A0A072TQ60_MEDTR RING/FYVE/PHD zinc finger protein; Found in the gene: LotjaGi3g1v0034000
Domains
23
LotjaGi3g1v0034000.2
– Protein strawberry notch like 1; TAIR: AT1G79350.1 RING/FYVE/PHD zinc finger superfamily protein; Swiss-Prot: sp|F4IF36|FGT1_ARATH Protein FORGETTER 1; TrEMBL-Plants: tr|A0A072TQ60|A0A072TQ60_MEDTR RING/FYVE/PHD zinc finger protein; Found in the gene: LotjaGi3g1v0034000
Domains
23
LotjaGi3g1v0131700.1
– Protein strawberry notch like 1; TAIR: AT1G79350.1 RING/FYVE/PHD zinc finger superfamily protein; Swiss-Prot: sp|F4IF36|FGT1_ARATH Protein FORGETTER 1; TrEMBL-Plants: tr|A0A072TQ60|A0A072TQ60_MEDTR RING/FYVE/PHD zinc finger protein; Found in the gene: LotjaGi3g1v0131700
Domains
24

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
mobidb-lite MobiDBLite 1 16.67