Domain Predictions — View

Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

IPR028261

Source: InterPro

Description

IPR028261 is a Dihydroprymidine dehydrogenase domain II.

<p>Domain II of the enzyme dihydroprymidine dehydrogenase binds FAD. Dihydroprymidine dehydrogenase catalyses the first and rate-limiting step of pyrimidine degradation by converting pyrimidines to the corresponding 5,6- dihydro compounds [[cite:PUB00013185]]. This domain carries two Fe4-S4 clusters.</p>

This description is obtained from EB-eye REST.

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 10

Transcript	Name	Description	Predicted domains	Domain count
Lj0g3v0254949.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: LOW QUALITY PROTEIN: glutamate synthase [NADH] gi\|502124343\|ref\|XP_004498486.1\|	Domains G3DSA:1.10.1060.10 G3DSA:3.40.50.720 G3DSA:3.50.50.60 IPR006005 IPR009051 IPR016040 IPR023753 IPR028261 PF07992 PF14691 PR00419 PTHR11938 PTHR11938:SF75 SSF46548 SSF51905 TIGR01317 mobidb-lite	17
LotjaGi1g1v0224700.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Glutamate synthase, putative; TAIR: AT5G53460.1 NADH-dependent glutamate synthase 1; Swiss-Prot: sp\|Q03460\|GLSN_MEDSA Glutamate synthase [NADH], amyloplastic; TrEMBL-Plants: tr\|A0A0B2SWZ8\|A0A0B2SWZ8_GLYSO Glutamate synthase [NADH], amyloplastic; Found in the gene: LotjaGi1g1v0224700	Domains Coil G3DSA:1.10.1060.10 G3DSA:2.160.20.60 G3DSA:3.20.20.70 G3DSA:3.50.50.60 G3DSA:3.60.20.10 IPR002489 IPR002932 IPR006005 IPR006982 IPR009051 IPR012220 IPR013785 IPR017932 IPR023753 IPR028261 IPR029055 IPR036188 IPR036485 PF00310 PF01493 PF01645 PF04898 PF07992 PF14691 PIRSF000187 PR00419 PS51278 PTHR11938 PTHR11938:SF131 SSF46548 SSF51395 SSF51905 SSF56235 SSF69336 TIGR01317 cd00713 cd00982 cd02808 mobidb-lite	40
LotjaGi1g1v0224700.10 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Glutamate synthase, putative; TAIR: AT5G53460.1 NADH-dependent glutamate synthase 1; Swiss-Prot: sp\|Q03460\|GLSN_MEDSA Glutamate synthase [NADH], amyloplastic; TrEMBL-Plants: tr\|A0A072VE66\|A0A072VE66_MEDTR NADH glutamate synthase; Found in the gene: LotjaGi1g1v0224700	Domains Coil G3DSA:1.10.1060.10 G3DSA:2.160.20.60 G3DSA:3.20.20.70 G3DSA:3.50.50.60 G3DSA:3.60.20.10 IPR002489 IPR002932 IPR006005 IPR006982 IPR009051 IPR013785 IPR017932 IPR023753 IPR028261 IPR029055 IPR036188 IPR036485 PF00310 PF01493 PF01645 PF04898 PF07992 PF14691 PR00419 PTHR11938 PTHR11938:SF131 SSF46548 SSF51395 SSF51905 SSF56235 SSF69336 TIGR01317 cd00982 cd02808 mobidb-lite	36
LotjaGi1g1v0224700.12 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Glutamate synthase, putative; TAIR: AT5G53460.1 NADH-dependent glutamate synthase 1; Swiss-Prot: sp\|Q03460\|GLSN_MEDSA Glutamate synthase [NADH], amyloplastic; TrEMBL-Plants: tr\|A0A0B2SWZ8\|A0A0B2SWZ8_GLYSO Glutamate synthase [NADH], amyloplastic; Found in the gene: LotjaGi1g1v0224700	Domains Coil G3DSA:1.10.1060.10 G3DSA:2.160.20.60 G3DSA:3.20.20.70 G3DSA:3.50.50.60 G3DSA:3.60.20.10 IPR002489 IPR002932 IPR006005 IPR006982 IPR009051 IPR012220 IPR013785 IPR017932 IPR023753 IPR028261 IPR029055 IPR036188 IPR036485 PF00310 PF01493 PF01645 PF04898 PF07992 PF14691 PIRSF000187 PR00419 PS51278 PTHR11938 PTHR11938:SF131 SSF46548 SSF51395 SSF51905 SSF56235 SSF69336 TIGR01317 cd00713 cd00982 cd02808 mobidb-lite	40
LotjaGi1g1v0224700.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Glutamate synthase, putative; TAIR: AT5G53460.1 NADH-dependent glutamate synthase 1; Swiss-Prot: sp\|Q03460\|GLSN_MEDSA Glutamate synthase [NADH], amyloplastic; TrEMBL-Plants: tr\|A0A072VE66\|A0A072VE66_MEDTR NADH glutamate synthase; Found in the gene: LotjaGi1g1v0224700	Domains Coil G3DSA:1.10.1060.10 G3DSA:2.160.20.60 G3DSA:3.20.20.70 G3DSA:3.50.50.60 G3DSA:3.60.20.10 IPR002489 IPR002932 IPR006005 IPR006982 IPR009051 IPR012220 IPR013785 IPR017932 IPR023753 IPR028261 IPR029055 IPR036188 IPR036485 NON_CYTOPLASMIC_DOMAIN PF00310 PF01493 PF01645 PF04898 PF07992 PF14691 PIRSF000187 PR00419 PS51278 PTHR11938 PTHR11938:SF131 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SSF46548 SSF51395 SSF51905 SSF56235 SSF69336 TIGR01317 cd00713 cd00982 cd02808 mobidb-lite	45
LotjaGi1g1v0224700.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Glutamate synthase, putative; TAIR: AT5G53460.1 NADH-dependent glutamate synthase 1; Swiss-Prot: sp\|Q03460\|GLSN_MEDSA Glutamate synthase [NADH], amyloplastic; TrEMBL-Plants: tr\|A0A0B2SWZ8\|A0A0B2SWZ8_GLYSO Glutamate synthase [NADH], amyloplastic; Found in the gene: LotjaGi1g1v0224700	Domains Coil G3DSA:1.10.1060.10 G3DSA:2.160.20.60 G3DSA:3.20.20.70 G3DSA:3.50.50.60 G3DSA:3.60.20.10 IPR002489 IPR002932 IPR006005 IPR006982 IPR009051 IPR013785 IPR017932 IPR023753 IPR028261 IPR029055 IPR036188 IPR036485 PF00310 PF01493 PF01645 PF04898 PF07992 PF14691 PR00419 PS51278 PTHR11938 PTHR11938:SF131 SSF46548 SSF51395 SSF51905 SSF56235 SSF69336 TIGR01317 cd00982 cd02808 mobidb-lite	37
LotjaGi1g1v0224700.4 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Glutamate synthase, putative; TAIR: AT5G53460.1 NADH-dependent glutamate synthase 1; Swiss-Prot: sp\|Q03460\|GLSN_MEDSA Glutamate synthase [NADH], amyloplastic; TrEMBL-Plants: tr\|A0A0B2SWZ8\|A0A0B2SWZ8_GLYSO Glutamate synthase [NADH], amyloplastic; Found in the gene: LotjaGi1g1v0224700	Domains Coil G3DSA:1.10.1060.10 G3DSA:2.160.20.60 G3DSA:3.20.20.70 G3DSA:3.50.50.60 G3DSA:3.60.20.10 IPR002489 IPR002932 IPR006005 IPR006982 IPR009051 IPR012220 IPR013785 IPR017932 IPR023753 IPR028261 IPR029055 IPR036188 IPR036485 PF00310 PF01493 PF01645 PF04898 PF07992 PF14691 PIRSF000187 PR00419 PS51278 PTHR11938 PTHR11938:SF131 SSF46548 SSF51395 SSF51905 SSF56235 SSF69336 TIGR01317 cd00713 cd00982 cd02808 mobidb-lite	40
LotjaGi1g1v0224700.5 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Glutamate synthase, putative; TAIR: AT5G53460.1 NADH-dependent glutamate synthase 1; Swiss-Prot: sp\|Q03460\|GLSN_MEDSA Glutamate synthase [NADH], amyloplastic; TrEMBL-Plants: tr\|A0A0S3RN10\|A0A0S3RN10_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0224700	Domains Coil G3DSA:1.10.1060.10 G3DSA:2.160.20.60 G3DSA:3.20.20.70 G3DSA:3.50.50.60 G3DSA:3.60.20.10 IPR002489 IPR002932 IPR006005 IPR006982 IPR009051 IPR012220 IPR013785 IPR017932 IPR023753 IPR028261 IPR029055 IPR036188 IPR036485 PF00310 PF01493 PF01645 PF04898 PF07992 PF14691 PIRSF000187 PR00419 PS51278 PTHR11938 PTHR11938:SF131 SSF46548 SSF51395 SSF51905 SSF56235 SSF69336 TIGR01317 cd00713 cd00982 cd02808 mobidb-lite	40
LotjaGi1g1v0224700.6 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Glutamate synthase, putative; TAIR: AT5G53460.1 NADH-dependent glutamate synthase 1; Swiss-Prot: sp\|Q03460\|GLSN_MEDSA Glutamate synthase [NADH], amyloplastic; TrEMBL-Plants: tr\|Q93WZ7\|Q93WZ7_PHAVU NADH glutamate synthase; Found in the gene: LotjaGi1g1v0224700	Domains Coil G3DSA:1.10.1060.10 G3DSA:2.160.20.60 G3DSA:3.20.20.70 G3DSA:3.50.50.60 IPR002489 IPR002932 IPR006005 IPR009051 IPR013785 IPR023753 IPR028261 IPR036188 IPR036485 PF01493 PF01645 PF07992 PF14691 PR00419 PTHR11938 PTHR11938:SF131 SSF46548 SSF51395 SSF51905 SSF69336 TIGR01317 cd00982 mobidb-lite	28
LotjaGi1g1v0224700.9 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Glutamate synthase, putative; TAIR: AT5G53460.1 NADH-dependent glutamate synthase 1; Swiss-Prot: sp\|Q03460\|GLSN_MEDSA Glutamate synthase [NADH], amyloplastic; TrEMBL-Plants: tr\|A0A072VE66\|A0A072VE66_MEDTR NADH glutamate synthase; Found in the gene: LotjaGi1g1v0224700	Domains Coil G3DSA:1.10.1060.10 G3DSA:2.160.20.60 G3DSA:3.20.20.70 G3DSA:3.50.50.60 G3DSA:3.60.20.10 IPR002489 IPR002932 IPR006005 IPR006982 IPR009051 IPR012220 IPR013785 IPR017932 IPR023753 IPR028261 IPR029055 IPR036188 IPR036485 NON_CYTOPLASMIC_DOMAIN PF00310 PF01493 PF01645 PF04898 PF07992 PF14691 PIRSF000187 PR00419 PS51278 PTHR11938 PTHR11938:SF131 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SSF46548 SSF51395 SSF51905 SSF56235 SSF69336 TIGR01317 cd00713 cd00982 cd02808 mobidb-lite	45

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
mobidb-lite	MobiDBLite	1	10.00