Domain Predictions — View

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SSF46548

Source: SUPERFAMILY

Description

No description is available for this domain.

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0051536 View details of GO:0051536 AmiGO InterPro QuickGO	Molecular function	Iron-sulfur cluster binding	Interacting selectively and non-covalently with an iron-sulfur cluster, a combination of iron and sulfur atoms.	Subterm of GO:0048037 GO:0051540

Associated Lotus transcripts 21

Transcript	Name	Description	Predicted domains	Domain count
Lj0g3v0254949.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: LOW QUALITY PROTEIN: glutamate synthase [NADH] gi\|502124343\|ref\|XP_004498486.1\|	Domains G3DSA:1.10.1060.10 G3DSA:3.40.50.720 G3DSA:3.50.50.60 IPR006005 IPR009051 IPR016040 IPR023753 IPR028261 PF07992 PF14691 PR00419 PTHR11938 PTHR11938:SF75 SSF46548 SSF51905 TIGR01317 mobidb-lite	17
Lj0g3v0336519.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: succinate dehydrogenase [ubiquinone] gi\|502089528\|ref\|XP_004488937.1\|	Domains G3DSA:1.10.1060.10 G3DSA:3.10.20.30 IPR001041 IPR004489 IPR009051 IPR012675 IPR017896 IPR017900 IPR025192 PF13085 PS00198 PS51379 PTHR11921 PTHR11921:SF29 SSF46548 SSF54292 TIGR00384	17
Lj1g3v3740570.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: succinate dehydrogenase [ubiquinone] gi\|502089528\|ref\|XP_004488937.1\|	Domains G3DSA:1.10.1060.10 G3DSA:3.10.20.30 IPR001041 IPR004489 IPR006058 IPR009051 IPR012675 IPR017896 IPR017900 IPR025192 PF13085 PF13534 PS00197 PS00198 PS51085 PS51379 PTHR11921 PTHR11921:SF29 SSF46548 SSF54292 SignalP-TM_GRAM_POSITIVE TIGR00384 cd00207 mobidb-lite	24
Lj1g3v3751710.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: succinate dehydrogenase [ubiquinone] gi\|502089528\|ref\|XP_004488937.1\|	Domains G3DSA:1.10.1060.10 G3DSA:3.10.20.30 IPR001041 IPR004489 IPR006058 IPR009051 IPR012675 IPR017896 IPR017900 IPR025192 PF13085 PF13237 PS00197 PS00198 PS51085 PS51379 PTHR11921 PTHR11921:SF29 SSF46548 SSF54292 SignalP-TM_GRAM_POSITIVE TIGR00384 cd00207	23
Lj1g3v3751710.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: succinate dehydrogenase [ubiquinone] gi\|502089528\|ref\|XP_004488937.1\|	Domains G3DSA:1.10.1060.10 G3DSA:3.10.20.30 IPR001041 IPR004489 IPR006058 IPR009051 IPR012675 IPR017896 IPR017900 IPR025192 PF13085 PF13237 PS00197 PS00198 PS51085 PS51379 PTHR11921 PTHR11921:SF29 SSF46548 SSF54292 SignalP-TM_GRAM_POSITIVE TIGR00384 cd00207	23
Lj4g3v0485140.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: succinate dehydrogenase [ubiquinone] gi\|502089528\|ref\|XP_004488937.1\|	Domains G3DSA:1.10.1060.10 G3DSA:3.10.20.30 IPR001041 IPR004489 IPR009051 IPR012675 IPR017896 IPR017900 IPR025192 PF13085 PS00198 PS51085 PS51379 PTHR11921 PTHR11921:SF29 SSF46548 SSF54292 TIGR00384	18
LotjaGi1g1v0218600_LC.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; TAIR: AT5G40650.1 succinate dehydrogenase 2-2; Swiss-Prot: sp\|Q8LB02\|SDHB2_ARATH Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial; TrEMBL-Plants: tr\|A0A0L9UIZ5\|A0A0L9UIZ5_PHAAN Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; Found in the gene: LotjaGi1g1v0218600_LC	Domains G3DSA:1.10.1060.10 G3DSA:3.10.20.30 IPR001041 IPR004489 IPR009051 IPR012675 IPR017896 IPR017900 IPR025192 IPR036010 PF13085 PS00198 PS51085 PS51379 PTHR11921 PTHR11921:SF39 SSF46548 SSF54292 TIGR00384	19
LotjaGi1g1v0224700.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Glutamate synthase, putative; TAIR: AT5G53460.1 NADH-dependent glutamate synthase 1; Swiss-Prot: sp\|Q03460\|GLSN_MEDSA Glutamate synthase [NADH], amyloplastic; TrEMBL-Plants: tr\|A0A0B2SWZ8\|A0A0B2SWZ8_GLYSO Glutamate synthase [NADH], amyloplastic; Found in the gene: LotjaGi1g1v0224700	Domains Coil G3DSA:1.10.1060.10 G3DSA:2.160.20.60 G3DSA:3.20.20.70 G3DSA:3.50.50.60 G3DSA:3.60.20.10 IPR002489 IPR002932 IPR006005 IPR006982 IPR009051 IPR012220 IPR013785 IPR017932 IPR023753 IPR028261 IPR029055 IPR036188 IPR036485 PF00310 PF01493 PF01645 PF04898 PF07992 PF14691 PIRSF000187 PR00419 PS51278 PTHR11938 PTHR11938:SF131 SSF46548 SSF51395 SSF51905 SSF56235 SSF69336 TIGR01317 cd00713 cd00982 cd02808 mobidb-lite	40
LotjaGi1g1v0224700.10 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Glutamate synthase, putative; TAIR: AT5G53460.1 NADH-dependent glutamate synthase 1; Swiss-Prot: sp\|Q03460\|GLSN_MEDSA Glutamate synthase [NADH], amyloplastic; TrEMBL-Plants: tr\|A0A072VE66\|A0A072VE66_MEDTR NADH glutamate synthase; Found in the gene: LotjaGi1g1v0224700	Domains Coil G3DSA:1.10.1060.10 G3DSA:2.160.20.60 G3DSA:3.20.20.70 G3DSA:3.50.50.60 G3DSA:3.60.20.10 IPR002489 IPR002932 IPR006005 IPR006982 IPR009051 IPR013785 IPR017932 IPR023753 IPR028261 IPR029055 IPR036188 IPR036485 PF00310 PF01493 PF01645 PF04898 PF07992 PF14691 PR00419 PTHR11938 PTHR11938:SF131 SSF46548 SSF51395 SSF51905 SSF56235 SSF69336 TIGR01317 cd00982 cd02808 mobidb-lite	36
LotjaGi1g1v0224700.12 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Glutamate synthase, putative; TAIR: AT5G53460.1 NADH-dependent glutamate synthase 1; Swiss-Prot: sp\|Q03460\|GLSN_MEDSA Glutamate synthase [NADH], amyloplastic; TrEMBL-Plants: tr\|A0A0B2SWZ8\|A0A0B2SWZ8_GLYSO Glutamate synthase [NADH], amyloplastic; Found in the gene: LotjaGi1g1v0224700	Domains Coil G3DSA:1.10.1060.10 G3DSA:2.160.20.60 G3DSA:3.20.20.70 G3DSA:3.50.50.60 G3DSA:3.60.20.10 IPR002489 IPR002932 IPR006005 IPR006982 IPR009051 IPR012220 IPR013785 IPR017932 IPR023753 IPR028261 IPR029055 IPR036188 IPR036485 PF00310 PF01493 PF01645 PF04898 PF07992 PF14691 PIRSF000187 PR00419 PS51278 PTHR11938 PTHR11938:SF131 SSF46548 SSF51395 SSF51905 SSF56235 SSF69336 TIGR01317 cd00713 cd00982 cd02808 mobidb-lite	40
LotjaGi1g1v0224700.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Glutamate synthase, putative; TAIR: AT5G53460.1 NADH-dependent glutamate synthase 1; Swiss-Prot: sp\|Q03460\|GLSN_MEDSA Glutamate synthase [NADH], amyloplastic; TrEMBL-Plants: tr\|A0A072VE66\|A0A072VE66_MEDTR NADH glutamate synthase; Found in the gene: LotjaGi1g1v0224700	Domains Coil G3DSA:1.10.1060.10 G3DSA:2.160.20.60 G3DSA:3.20.20.70 G3DSA:3.50.50.60 G3DSA:3.60.20.10 IPR002489 IPR002932 IPR006005 IPR006982 IPR009051 IPR012220 IPR013785 IPR017932 IPR023753 IPR028261 IPR029055 IPR036188 IPR036485 NON_CYTOPLASMIC_DOMAIN PF00310 PF01493 PF01645 PF04898 PF07992 PF14691 PIRSF000187 PR00419 PS51278 PTHR11938 PTHR11938:SF131 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SSF46548 SSF51395 SSF51905 SSF56235 SSF69336 TIGR01317 cd00713 cd00982 cd02808 mobidb-lite	45
LotjaGi1g1v0224700.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Glutamate synthase, putative; TAIR: AT5G53460.1 NADH-dependent glutamate synthase 1; Swiss-Prot: sp\|Q03460\|GLSN_MEDSA Glutamate synthase [NADH], amyloplastic; TrEMBL-Plants: tr\|A0A0B2SWZ8\|A0A0B2SWZ8_GLYSO Glutamate synthase [NADH], amyloplastic; Found in the gene: LotjaGi1g1v0224700	Domains Coil G3DSA:1.10.1060.10 G3DSA:2.160.20.60 G3DSA:3.20.20.70 G3DSA:3.50.50.60 G3DSA:3.60.20.10 IPR002489 IPR002932 IPR006005 IPR006982 IPR009051 IPR013785 IPR017932 IPR023753 IPR028261 IPR029055 IPR036188 IPR036485 PF00310 PF01493 PF01645 PF04898 PF07992 PF14691 PR00419 PS51278 PTHR11938 PTHR11938:SF131 SSF46548 SSF51395 SSF51905 SSF56235 SSF69336 TIGR01317 cd00982 cd02808 mobidb-lite	37
LotjaGi1g1v0224700.4 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Glutamate synthase, putative; TAIR: AT5G53460.1 NADH-dependent glutamate synthase 1; Swiss-Prot: sp\|Q03460\|GLSN_MEDSA Glutamate synthase [NADH], amyloplastic; TrEMBL-Plants: tr\|A0A0B2SWZ8\|A0A0B2SWZ8_GLYSO Glutamate synthase [NADH], amyloplastic; Found in the gene: LotjaGi1g1v0224700	Domains Coil G3DSA:1.10.1060.10 G3DSA:2.160.20.60 G3DSA:3.20.20.70 G3DSA:3.50.50.60 G3DSA:3.60.20.10 IPR002489 IPR002932 IPR006005 IPR006982 IPR009051 IPR012220 IPR013785 IPR017932 IPR023753 IPR028261 IPR029055 IPR036188 IPR036485 PF00310 PF01493 PF01645 PF04898 PF07992 PF14691 PIRSF000187 PR00419 PS51278 PTHR11938 PTHR11938:SF131 SSF46548 SSF51395 SSF51905 SSF56235 SSF69336 TIGR01317 cd00713 cd00982 cd02808 mobidb-lite	40
LotjaGi1g1v0224700.5 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Glutamate synthase, putative; TAIR: AT5G53460.1 NADH-dependent glutamate synthase 1; Swiss-Prot: sp\|Q03460\|GLSN_MEDSA Glutamate synthase [NADH], amyloplastic; TrEMBL-Plants: tr\|A0A0S3RN10\|A0A0S3RN10_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0224700	Domains Coil G3DSA:1.10.1060.10 G3DSA:2.160.20.60 G3DSA:3.20.20.70 G3DSA:3.50.50.60 G3DSA:3.60.20.10 IPR002489 IPR002932 IPR006005 IPR006982 IPR009051 IPR012220 IPR013785 IPR017932 IPR023753 IPR028261 IPR029055 IPR036188 IPR036485 PF00310 PF01493 PF01645 PF04898 PF07992 PF14691 PIRSF000187 PR00419 PS51278 PTHR11938 PTHR11938:SF131 SSF46548 SSF51395 SSF51905 SSF56235 SSF69336 TIGR01317 cd00713 cd00982 cd02808 mobidb-lite	40
LotjaGi1g1v0224700.6 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Glutamate synthase, putative; TAIR: AT5G53460.1 NADH-dependent glutamate synthase 1; Swiss-Prot: sp\|Q03460\|GLSN_MEDSA Glutamate synthase [NADH], amyloplastic; TrEMBL-Plants: tr\|Q93WZ7\|Q93WZ7_PHAVU NADH glutamate synthase; Found in the gene: LotjaGi1g1v0224700	Domains Coil G3DSA:1.10.1060.10 G3DSA:2.160.20.60 G3DSA:3.20.20.70 G3DSA:3.50.50.60 IPR002489 IPR002932 IPR006005 IPR009051 IPR013785 IPR023753 IPR028261 IPR036188 IPR036485 PF01493 PF01645 PF07992 PF14691 PR00419 PTHR11938 PTHR11938:SF131 SSF46548 SSF51395 SSF51905 SSF69336 TIGR01317 cd00982 mobidb-lite	28
LotjaGi1g1v0224700.9 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Glutamate synthase, putative; TAIR: AT5G53460.1 NADH-dependent glutamate synthase 1; Swiss-Prot: sp\|Q03460\|GLSN_MEDSA Glutamate synthase [NADH], amyloplastic; TrEMBL-Plants: tr\|A0A072VE66\|A0A072VE66_MEDTR NADH glutamate synthase; Found in the gene: LotjaGi1g1v0224700	Domains Coil G3DSA:1.10.1060.10 G3DSA:2.160.20.60 G3DSA:3.20.20.70 G3DSA:3.50.50.60 G3DSA:3.60.20.10 IPR002489 IPR002932 IPR006005 IPR006982 IPR009051 IPR012220 IPR013785 IPR017932 IPR023753 IPR028261 IPR029055 IPR036188 IPR036485 NON_CYTOPLASMIC_DOMAIN PF00310 PF01493 PF01645 PF04898 PF07992 PF14691 PIRSF000187 PR00419 PS51278 PTHR11938 PTHR11938:SF131 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SSF46548 SSF51395 SSF51905 SSF56235 SSF69336 TIGR01317 cd00713 cd00982 cd02808 mobidb-lite	45
LotjaGi1g1v0616900.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; TAIR: AT5G40650.1 succinate dehydrogenase 2-2; Swiss-Prot: sp\|Q8LB02\|SDHB2_ARATH Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial; TrEMBL-Plants: tr\|A0A0S3SJV1\|A0A0S3SJV1_PHAAN Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; Found in the gene: LotjaGi1g1v0616900	Domains G3DSA:1.10.1060.10 G3DSA:3.10.20.30 IPR001041 IPR004489 IPR006058 IPR009051 IPR012675 IPR017896 IPR017900 IPR025192 IPR036010 PF13085 PF13534 PS00197 PS00198 PS51085 PS51379 PTHR11921 PTHR11921:SF39 SSF46548 SSF54292 SignalP-TM TIGR00384 cd00207 mobidb-lite	25
LotjaGi1g1v0616900.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; TAIR: AT5G40650.1 succinate dehydrogenase 2-2; Swiss-Prot: sp\|Q8LB02\|SDHB2_ARATH Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial; TrEMBL-Plants: tr\|A0A0S3SJV1\|A0A0S3SJV1_PHAAN Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; Found in the gene: LotjaGi1g1v0616900	Domains G3DSA:1.10.1060.10 G3DSA:3.10.20.30 IPR001041 IPR004489 IPR006058 IPR009051 IPR012675 IPR017896 IPR017900 IPR025192 IPR036010 PF13085 PF13534 PS00197 PS00198 PS51085 PS51379 PTHR11921 PTHR11921:SF39 SSF46548 SSF54292 SignalP-TM TIGR00384 cd00207 mobidb-lite	25
LotjaGi1g1v0617600.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; TAIR: AT5G40650.1 succinate dehydrogenase 2-2; Swiss-Prot: sp\|Q8LB02\|SDHB2_ARATH Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial; TrEMBL-Plants: tr\|A0A0S3SJV1\|A0A0S3SJV1_PHAAN Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; Found in the gene: LotjaGi1g1v0617600	Domains G3DSA:1.10.1060.10 G3DSA:3.10.20.30 IPR001041 IPR004489 IPR006058 IPR009051 IPR012675 IPR017896 IPR017900 IPR025192 IPR036010 PF13085 PF13237 PS00197 PS00198 PS51085 PS51379 PTHR11921 PTHR11921:SF39 SSF46548 SSF54292 SignalP-TM TIGR00384 cd00207	24
LotjaGi1g1v0617600.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; TAIR: AT5G40650.1 succinate dehydrogenase 2-2; Swiss-Prot: sp\|Q8LB02\|SDHB2_ARATH Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial; TrEMBL-Plants: tr\|A0A0S3SJV1\|A0A0S3SJV1_PHAAN Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; Found in the gene: LotjaGi1g1v0617600	Domains G3DSA:1.10.1060.10 G3DSA:3.10.20.30 IPR001041 IPR004489 IPR006058 IPR009051 IPR012675 IPR017896 IPR017900 IPR025192 IPR036010 PF13085 PF13237 PS00197 PS00198 PS51085 PS51379 PTHR11921 PTHR11921:SF39 SSF46548 SSF54292 SignalP-TM TIGR00384 cd00207	24
LotjaGi1g1v0617600.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; TAIR: AT5G40650.1 succinate dehydrogenase 2-2; Swiss-Prot: sp\|Q8LB02\|SDHB2_ARATH Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial; TrEMBL-Plants: tr\|A0A0S3SJV1\|A0A0S3SJV1_PHAAN Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; Found in the gene: LotjaGi1g1v0617600	Domains G3DSA:1.10.1060.10 G3DSA:3.10.20.30 IPR001041 IPR004489 IPR006058 IPR009051 IPR012675 IPR017896 IPR017900 IPR025192 IPR036010 PF13085 PF13237 PS00197 PS00198 PS51085 PS51379 PTHR11921 PTHR11921:SF39 SSF46548 SSF54292 SignalP-TM TIGR00384 cd00207	24

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
cd00207	CDD	1	4.76