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IPR030380 is a SAM-dependent methyltransferase DRM.
<p>Domains Rearranged Methylases (DRM1 and DRM2) are de novo cytosine methyltransferases from plants involved in the initial methylation of unmethylated DNA sequences [[cite:PUB00058139]]. Plant DNA is frequently methylated in three different sequence contexts: CG, CHG, and CHH (H = A, T, or C). In Arabidopsis thaliana, the maintenance of CHH methylation is controlled by DRM2 [[cite:PUB00072529]].</p> <p>This entry represents the methyltransferase domain of DRM. The overall structure retains a classic class I methyltransferase fold [[cite:PUB00072529]].</p>
This description is obtained from EB-eye REST.
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | DNA methylation | The covalent transfer of a methyl group to either N-6 of adenine or C-5 or N-4 of cytosine. |
| Transcript | Name | Description | Predicted domains | Domain count |
|---|---|---|---|---|
| – | PREDICTED: DNA (cytosine-5)-methyltransferase DRM2-like [Glycine max] gi|356511676|ref|XP_003524549.1| | 11 | ||
| – | PREDICTED: DNA (cytosine-5)-methyltransferase DRM2-like, partial [Solanum lycopersicum] gi|460415896|ref|XP_004253289.1| | 8 | ||
| – | PREDICTED: DNA (cytosine-5)-methyltransferase DRM2-like [Glycine max] gi|356511676|ref|XP_003524549.1| | 7 | ||
| – | PREDICTED: DNA (cytosine-5)-methyltransferase DRM1-like isoform X1 [Cicer arietinum] gi|502150738|ref|XP_004508099.1| | 5 | ||
| – | PREDICTED: DNA (cytosine-5)-methyltransferase DRM1-like [Glycine max] gi|356519874|ref|XP_003528594.1| | 7 | ||
| – | DNA (Cytosine-5-)-methyltransferase; TAIR: AT5G14620.1 domains rearranged methyltransferase 2; Swiss-Prot: sp|Q9M548|DRM2_ARATH DNA (cytosine-5)-methyltransferase DRM2; TrEMBL-Plants: tr|I1K1I2|I1K1I2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0244100 | 9 | ||
| – | DNA (Cytosine-5-)-methyltransferase; TAIR: AT5G14620.1 domains rearranged methyltransferase 2; Swiss-Prot: sp|Q9M548|DRM2_ARATH DNA (cytosine-5)-methyltransferase DRM2; TrEMBL-Plants: tr|I1K1I2|I1K1I2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0244100 | 13 | ||
| – | DNA (Cytosine-5-)-methyltransferase; TAIR: AT5G14620.1 domains rearranged methyltransferase 2; Swiss-Prot: sp|Q9M548|DRM2_ARATH DNA (cytosine-5)-methyltransferase DRM2; TrEMBL-Plants: tr|K7K692|K7K692_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0321400_LC | 9 | ||
| – | DNA (Cytosine-5-)-methyltransferase; TAIR: AT5G14620.1 domains rearranged methyltransferase 2; Swiss-Prot: sp|Q9M548|DRM2_ARATH DNA (cytosine-5)-methyltransferase DRM2; TrEMBL-Plants: tr|I1K1I2|I1K1I2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0172800 | 13 | ||
| – | DNA (Cytosine-5-)-methyltransferase; TAIR: AT3G17310.1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; Swiss-Prot: sp|Q8H1E8|DRM3_ARATH Probable inactive DNA (cytosine-5)-methyltransferase DRM3; TrEMBL-Plants: tr|K7MJU2|K7MJU2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0335100 | 8 |
A list of co-occurring predicted domains within the L. japonicus gene space:
| Predicted domain | Source | Observations | Saturation (%) |
|---|---|---|---|
| mobidb-lite | MobiDBLite | 1 | 10.00 |