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IPR015940 is a Ubiquitin-associated domain.
<p>UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases [[cite:PUB00005450]]. The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle [[cite:PUB00003958]]. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded β-sheet of ubiquitin [[cite:PUB00007089]].</p> <p>This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts [[cite:PUB00006344]].</p>
This description is obtained from EB-eye REST.
| Transcript | Name | Description | Predicted domains | Domain count |
|---|---|---|---|---|
| – | PREDICTED: DNA (cytosine-5)-methyltransferase DRM2-like [Glycine max] gi|356511676|ref|XP_003524549.1| | 11 | ||
| – | PREDICTED: ubiquitin carboxyl-terminal hydrolase 14-like [Glycine max] gi|356517211|ref|XP_003527282.1| | 7 | ||
| – | PREDICTED: OTU domain-containing protein 5-like isoform X4 [Cicer arietinum] gi|502083515|ref|XP_004487483.1| | 10 | ||
| – | PREDICTED: ubiquitin carboxyl-terminal hydrolase 14-like [Glycine max] gi|356517211|ref|XP_003527282.1| | 29 | ||
| – | PREDICTED: ubiquilin-1-like [Glycine max] gi|356501749|ref|XP_003519686.1| | 21 | ||
| – | PREDICTED: E3 ubiquitin-protein ligase UPL2-like [Glycine max] gi|356551781|ref|XP_003544252.1| | 33 | ||
| – | PREDICTED: ubiquitin-conjugating enzyme E2 27-like isoform 1 [Glycine max] gi|356508845|ref|XP_003523164.1| | 19 | ||
| – | PREDICTED: E3 ubiquitin-protein ligase UPL1-like [Glycine max] gi|356518443|ref|XP_003527888.1| | 31 | ||
| – | RAD23-like [Solanum tuberosum] gi|77745475|gb|ABB02636.1| | 27 | ||
| – | Ubiquitin-associated domain-containing protein [Medicago truncatula] gi|357509361|ref|XP_003624969.1| | 16 | ||
| – | RHOMBOID-like protein 15 [Theobroma cacao] gi|508717744|gb|EOY09641.1| | 19 | ||
| – | Rad23 UV excision repair protein family isoform 1 [Theobroma cacao] gi|508710184|gb|EOY02081.1| | 29 | ||
| – | PREDICTED: ubiquilin-like [Cicer arietinum] gi|502161708|ref|XP_004512257.1| | 14 | ||
| – | Ubiquitin-associated/translation elongation factor EF1B protein [Theobroma cacao] gi|508785689|gb|EOY32945.1| | 10 | ||
| – | Ubiquitin-associated/translation elongation factor EF1B protein [Theobroma cacao] gi|508785689|gb|EOY32945.1| | 10 | ||
| – | 27 | |||
| – | Rad23 UV excision repair protein family isoform 1 [Theobroma cacao] gi|508710184|gb|EOY02081.1| | 28 | ||
| – | PREDICTED: UBX domain-containing protein 1-like [Cicer arietinum] gi|502155980|ref|XP_004510266.1| | 15 | ||
| – | Ubiquitin-associated/translation elongation factor EF1B protein [Theobroma cacao] gi|508785689|gb|EOY32945.1| | 11 | ||
| – | OTU domain-containing protein [Medicago truncatula] gi|357453181|ref|XP_003596867.1| | 9 | ||
| – | PREDICTED: OTU domain-containing protein 5-like isoform X1 [Cicer arietinum] gi|502083504|ref|XP_004487480.1| | 19 | ||
| – | PREDICTED: E3 ubiquitin-protein ligase UPL1-like [Glycine max] gi|356512215|ref|XP_003524816.1| | 24 | ||
| – | 18 | |||
| – | JOKA2 [Nicotiana tabacum] gi|337732515|gb|AEI71779.1| | 24 | ||
| – | PREDICTED: UBX domain-containing protein 1-A-like [Glycine max] gi|356525231|ref|XP_003531230.1| | 19 | ||
| – | PREDICTED: UBX domain-containing protein 1-A-like [Glycine max] gi|356525231|ref|XP_003531230.1| | 17 | ||
| – | ATP-dependent DNA helicase Q4 [Medicago truncatula] gi|357441723|ref|XP_003591139.1| | 20 | ||
| – | PREDICTED: ATP-dependent DNA helicase Q-like SIM-like [Cicer arietinum] gi|502117128|ref|XP_004495713.1| | 26 | ||
| – | PREDICTED: ATP-dependent DNA helicase Q-like SIM-like [Cicer arietinum] gi|502117128|ref|XP_004495713.1| | 26 | ||
| – | Rad23 UV excision repair protein family isoform 1 [Theobroma cacao] gi|508710184|gb|EOY02081.1| | 29 | ||
| – | PREDICTED: DNA damage-inducible protein 1-like [Cicer arietinum] gi|502129048|ref|XP_004500164.1| | 25 | ||
| – | Ubiquitin-associated/translation elongation factor EF1B protein [Theobroma cacao] gi|508785689|gb|EOY32945.1| | 8 | ||
| – | PREDICTED: NEDD8 ultimate buster 1-like [Glycine max] gi|356530579|ref|XP_003533858.1| | 17 | ||
| – | Holliday junction ATP-dependent DNA helicase RuvB; TAIR: AT1G24290.1 AAA-type ATPase family protein; Swiss-Prot: sp|Q8CG07|WRIP1_RAT ATPase WRNIP1; TrEMBL-Plants: tr|A0A0L9UUH5|A0A0L9UUH5_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0004000 | 27 | ||
| – | Holliday junction ATP-dependent DNA helicase RuvB; TAIR: AT1G24290.1 AAA-type ATPase family protein; Swiss-Prot: sp|Q8CG07|WRIP1_RAT ATPase WRNIP1; TrEMBL-Plants: tr|G7KFD2|G7KFD2_MEDTR AAA family ATPase; Found in the gene: LotjaGi1g1v0004000 | 26 | ||
| – | Ubiquitin-associated domain-containing family protein; TAIR: AT2G26920.1 Ubiquitin-associated/translation elongation factor EF1B protein; Swiss-Prot: sp|P28515|ELT1_CAEEL Transcription factor elt-1; TrEMBL-Plants: tr|I1JIT7|I1JIT7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0053300 | 9 | ||
| – | Ubiquitin-associated domain-containing family protein; TAIR: AT2G26920.1 Ubiquitin-associated/translation elongation factor EF1B protein; Swiss-Prot: sp|P28515|ELT1_CAEEL Transcription factor elt-1; TrEMBL-Plants: tr|I1JIT7|I1JIT7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0053300 | 9 | ||
| – | E3 ubiquitin-protein ligase; TAIR: AT1G55860.1 LOW protein: E3 ubiquitin ligase-like protein; Swiss-Prot: sp|Q8GY23|UPL1_ARATH E3 ubiquitin-protein ligase UPL1; TrEMBL-Plants: tr|I1MB15|I1MB15_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0135300 | 34 | ||
| – | E3 ubiquitin-protein ligase; TAIR: AT1G55860.1 LOW protein: E3 ubiquitin ligase-like protein; Swiss-Prot: sp|Q8GY23|UPL1_ARATH E3 ubiquitin-protein ligase UPL1; TrEMBL-Plants: tr|K7M7U0|K7M7U0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0135300 | 32 | ||
| – | E3 ubiquitin-protein ligase; TAIR: AT1G55860.1 LOW protein: E3 ubiquitin ligase-like protein; Swiss-Prot: sp|Q8GY23|UPL1_ARATH E3 ubiquitin-protein ligase UPL1; TrEMBL-Plants: tr|I1MB15|I1MB15_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0135300 | 34 | ||
| – | E3 ubiquitin-protein ligase; TAIR: AT1G55860.1 LOW protein: E3 ubiquitin ligase-like protein; Swiss-Prot: sp|Q8GY23|UPL1_ARATH E3 ubiquitin-protein ligase UPL1; TrEMBL-Plants: tr|K7M7U0|K7M7U0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0135300 | 32 | ||
| – | E3 ubiquitin-protein ligase; TAIR: AT1G55860.1 LOW protein: E3 ubiquitin ligase-like protein; Swiss-Prot: sp|Q8GY23|UPL1_ARATH E3 ubiquitin-protein ligase UPL1; TrEMBL-Plants: tr|I1MB15|I1MB15_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0135300 | 34 | ||
| – | Proline-rich cell wall-like protein; TAIR: AT5G53330.1 Ubiquitin-associated/translation elongation factor EF1B protein; Swiss-Prot: sp|Q9NZ09|UBAP1_HUMAN Ubiquitin-associated protein 1; TrEMBL-Plants: tr|I3SQZ2|I3SQZ2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0277000 | 11 | ||
| – | Ubiquitin-conjugating enzyme E2, putative; TAIR: AT5G50870.1 ubiquitin-conjugating enzyme 27; Swiss-Prot: sp|Q9FI61|UBC27_ARATH Ubiquitin-conjugating enzyme E2 27; TrEMBL-Plants: tr|I3SXJ9|I3SXJ9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0335000 | 20 | ||
| – | Ubiquitin-conjugating enzyme E2, putative; TAIR: AT5G50870.1 ubiquitin-conjugating enzyme 27; Swiss-Prot: sp|Q9FI61|UBC27_ARATH Ubiquitin-conjugating enzyme E2 27; TrEMBL-Plants: tr|I3SXJ9|I3SXJ9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0335000 | 20 | ||
| – | E3 ubiquitin-protein ligase; TAIR: AT1G55860.1 LOW protein: E3 ubiquitin ligase-like protein; Swiss-Prot: sp|Q8GY23|UPL1_ARATH E3 ubiquitin-protein ligase UPL1; TrEMBL-Plants: tr|I1K9T4|I1K9T4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0342400 | 34 | ||
| – | E3 ubiquitin-protein ligase; TAIR: AT1G55860.1 LOW protein: E3 ubiquitin ligase-like protein; Swiss-Prot: sp|Q8GY23|UPL1_ARATH E3 ubiquitin-protein ligase UPL1; TrEMBL-Plants: tr|I1K9T4|I1K9T4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0342400 | 34 | ||
| – | E3 ubiquitin-protein ligase; TAIR: AT1G55860.1 LOW protein: E3 ubiquitin ligase-like protein; Swiss-Prot: sp|Q8GY23|UPL1_ARATH E3 ubiquitin-protein ligase UPL1; TrEMBL-Plants: tr|I1K9T4|I1K9T4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0342400 | 34 | ||
| – | Non-specific serine/threonine protein kinase; TAIR: AT3G01090.1 SNF1 kinase homolog 10; Swiss-Prot: sp|Q38997|KIN10_ARATH SNF1-related protein kinase catalytic subunit alpha KIN10; TrEMBL-Plants: tr|Q53VM4|Q53VM4_LOTJA Non-specific serine/threonine protein kinase; Found in the gene: LotjaGi1g1v0506500 | 27 | ||
| – | Non-specific serine/threonine protein kinase; TAIR: AT3G01090.2 SNF1 kinase homolog 10; Swiss-Prot: sp|Q38997|KIN10_ARATH SNF1-related protein kinase catalytic subunit alpha KIN10; TrEMBL-Plants: tr|Q53VM4|Q53VM4_LOTJA Non-specific serine/threonine protein kinase; Found in the gene: LotjaGi1g1v0506500 | 24 | ||
| – | Non-specific serine/threonine protein kinase; TAIR: AT3G01090.2 SNF1 kinase homolog 10; Swiss-Prot: sp|Q38997|KIN10_ARATH SNF1-related protein kinase catalytic subunit alpha KIN10; TrEMBL-Plants: tr|Q53VM4|Q53VM4_LOTJA Non-specific serine/threonine protein kinase; Found in the gene: LotjaGi1g1v0506500 | 19 | ||
| – | Non-specific serine/threonine protein kinase; TAIR: AT3G01090.2 SNF1 kinase homolog 10; Swiss-Prot: sp|Q38997|KIN10_ARATH SNF1-related protein kinase catalytic subunit alpha KIN10; TrEMBL-Plants: tr|Q53VM4|Q53VM4_LOTJA Non-specific serine/threonine protein kinase; Found in the gene: LotjaGi1g1v0506500 | 27 | ||
| – | Non-specific serine/threonine protein kinase; TAIR: AT3G01090.2 SNF1 kinase homolog 10; Swiss-Prot: sp|Q38997|KIN10_ARATH SNF1-related protein kinase catalytic subunit alpha KIN10; TrEMBL-Plants: tr|Q53VM4|Q53VM4_LOTJA Non-specific serine/threonine protein kinase; Found in the gene: LotjaGi1g1v0506500 | 28 | ||
| – | Non-specific serine/threonine protein kinase; TAIR: AT3G01090.1 SNF1 kinase homolog 10; Swiss-Prot: sp|Q38997|KIN10_ARATH SNF1-related protein kinase catalytic subunit alpha KIN10; TrEMBL-Plants: tr|Q53VM4|Q53VM4_LOTJA Non-specific serine/threonine protein kinase; Found in the gene: LotjaGi1g1v0506500 | 27 | ||
| – | RAD23 UV excision repair family protein; TAIR: AT5G38470.1 Rad23 UV excision repair protein family; Swiss-Prot: sp|Q84L30|RD23D_ARATH Ubiquitin receptor RAD23d; TrEMBL-Plants: tr|I3SBD5|I3SBD5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0550600 | 28 | ||
| – | Ubiquitin-associated domain-containing protein 2; TAIR: AT3G56740.1 Ubiquitin-associated (UBA) protein; Swiss-Prot: sp|Q9LET3|RBL20_ARATH Rhomboid-like protein 20; TrEMBL-Plants: tr|G7KQP7|G7KQP7_MEDTR Ubiquitin-associated/TS-N domain protein; Found in the gene: LotjaGi1g1v0662300 | 14 | ||
| – | Rhomboid family protein; TAIR: AT3G58460.1 RHOMBOID-like protein 15; Swiss-Prot: sp|Q8LB17|RBL15_ARATH Rhomboid-like protein 15; TrEMBL-Plants: tr|A0A151TVU8|A0A151TVU8_CAJCA Uncharacterized protein family; Found in the gene: LotjaGi1g1v0742500 | 20 | ||
| – | DNA (Cytosine-5-)-methyltransferase; TAIR: AT5G14620.1 domains rearranged methyltransferase 2; Swiss-Prot: sp|Q9M548|DRM2_ARATH DNA (cytosine-5)-methyltransferase DRM2; TrEMBL-Plants: tr|I1K1I2|I1K1I2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0244100 | 13 | ||
| – | RAD23 UV excision repair family protein; TAIR: AT3G02540.3 Rad23 UV excision repair protein family; Swiss-Prot: sp|Q84L31|RD23C_ARATH Ubiquitin receptor RAD23c; TrEMBL-Plants: tr|A0A151RI27|A0A151RI27_CAJCA Putative DNA repair protein RAD23-3; Found in the gene: LotjaGi2g1v0277900 | 30 | ||
| – | Ubiquitin-like protein; TAIR: AT2G17200.1 ubiquitin family protein; Swiss-Prot: sp|Q9SII8|DSK2B_ARATH Ubiquitin domain-containing protein DSK2b; TrEMBL-Plants: tr|A0A151THR2|A0A151THR2_CAJCA Ubiquilin-1; Found in the gene: LotjaGi2g1v0355900 | 26 | ||
| – | Ubiquitin family protein; TAIR: AT1G79650.2 Rad23 UV excision repair protein family; Swiss-Prot: sp|Q84L33|RD23B_ARATH Ubiquitin receptor RAD23b; TrEMBL-Plants: tr|A0A0S3SF25|A0A0S3SF25_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0002300 | 28 | ||
| – | UBX domain-containing protein 1; TAIR: AT1G04850.1 ubiquitin-associated (UBA)/TS-N domain-containing protein; Swiss-Prot: sp|Q6GL77|UBXN1_XENTR UBX domain-containing protein 1; TrEMBL-Plants: tr|A0A072TXC9|A0A072TXC9_MEDTR Ubiquitin-associated (UBA)/TS-N domain protein; Found in the gene: LotjaGi3g1v0084400 | 17 | ||
| – | DNA (Cytosine-5-)-methyltransferase; TAIR: AT5G14620.1 domains rearranged methyltransferase 2; Swiss-Prot: sp|Q9M548|DRM2_ARATH DNA (cytosine-5)-methyltransferase DRM2; TrEMBL-Plants: tr|I1K1I2|I1K1I2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0172800 | 13 | ||
| – | OTU domain-containing protein; TAIR: AT2G27350.1 OTU-like cysteine protease family protein; Swiss-Prot: sp|Q3U2S4|OTUD5_MOUSE OTU domain-containing protein 5; TrEMBL-Plants: tr|G7IHG3|G7IHG3_MEDTR OTU-like cysteine protease; Found in the gene: LotjaGi3g1v0179500 | 11 | ||
| – | OTU domain-containing protein; TAIR: AT2G27350.1 OTU-like cysteine protease family protein; Swiss-Prot: sp|Q3U2S4|OTUD5_MOUSE OTU domain-containing protein 5; TrEMBL-Plants: tr|G7IHG3|G7IHG3_MEDTR OTU-like cysteine protease; Found in the gene: LotjaGi3g1v0179500 | 11 | ||
| – | Ubiquitin-associated domain-containing family protein; TAIR: AT2G26920.1 Ubiquitin-associated/translation elongation factor EF1B protein; Swiss-Prot: sp|Q9LM84|WOX14_ARATH WUSCHEL-related homeobox 14; TrEMBL-Plants: tr|I1MIK5|I1MIK5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0312200 | 11 | ||
| – | Ubiquitinyl hydrolase 1; TAIR: AT3G20630.1 ubiquitin-specific protease 14; Swiss-Prot: sp|Q8L6Y1|UBP14_ARATH Ubiquitin carboxyl-terminal hydrolase 14; TrEMBL-Plants: tr|A0A0S3S9M3|A0A0S3S9M3_PHAAN Ubiquitinyl hydrolase 1; Found in the gene: LotjaGi3g1v0325900 | 32 | ||
| – | OTU domain-containing protein 5; TAIR: AT2G27350.3 OTU-like cysteine protease family protein; Swiss-Prot: sp|Q1RIM1|TOP1_RICBR DNA topoisomerase 1; TrEMBL-Plants: tr|A0A0B2S056|A0A0B2S056_GLYSO OTU domain-containing protein 5; Found in the gene: LotjaGi3g1v0475100_LC | 8 | ||
| – | OTU domain-containing protein; TAIR: AT2G27350.3 OTU-like cysteine protease family protein; Swiss-Prot: sp|Q08BW0|OTU5A_DANRE OTU domain-containing protein 5-A; TrEMBL-Plants: tr|A0A0B2S056|A0A0B2S056_GLYSO OTU domain-containing protein 5; Found in the gene: LotjaGi3g1v0475100_LC | 20 | ||
| – | E3 ubiquitin-protein ligase; TAIR: AT1G55860.1 LOW protein: E3 ubiquitin ligase-like protein; Swiss-Prot: sp|Q8GY23|UPL1_ARATH E3 ubiquitin-protein ligase UPL1; TrEMBL-Plants: tr|I1K373|I1K373_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0020600 | 33 | ||
| – | E3 ubiquitin-protein ligase; TAIR: AT1G55860.1 LOW protein: E3 ubiquitin ligase-like protein; Swiss-Prot: sp|Q8GY23|UPL1_ARATH E3 ubiquitin-protein ligase UPL1; TrEMBL-Plants: tr|A0A0B2R0Y5|A0A0B2R0Y5_GLYSO E3 ubiquitin-protein ligase UPL1; Found in the gene: LotjaGi4g1v0020600 | 33 | ||
| – | E3 ubiquitin-protein ligase; TAIR: AT1G55860.1 LOW protein: E3 ubiquitin ligase-like protein; Swiss-Prot: sp|Q8GY23|UPL1_ARATH E3 ubiquitin-protein ligase UPL1; TrEMBL-Plants: tr|A0A0B2R0Y5|A0A0B2R0Y5_GLYSO E3 ubiquitin-protein ligase UPL1; Found in the gene: LotjaGi4g1v0020600 | 33 | ||
| – | Ubiquitin-like protein; TAIR: AT2G17200.1 ubiquitin family protein; Swiss-Prot: sp|Q9SII8|DSK2B_ARATH Ubiquitin domain-containing protein DSK2b; TrEMBL-Plants: tr|A0A0S3R3T1|A0A0S3R3T1_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0136800 | 22 | ||
| – | Ubiquitin-like protein; TAIR: AT2G17200.1 ubiquitin family protein; Swiss-Prot: sp|Q9SII8|DSK2B_ARATH Ubiquitin domain-containing protein DSK2b; TrEMBL-Plants: tr|A0A0S3R3T1|A0A0S3R3T1_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0136800 | 22 | ||
| – | Ubiquitin-associated protein; TAIR: AT4G24690.1 ubiquitin-associated (UBA)/TS-N domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing protein; Swiss-Prot: sp|Q9SB64|NBR1_ARATH Protein NBR1 homolog; TrEMBL-Plants: tr|A0A0S3R6E3|A0A0S3R6E3_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0228400 | 28 | ||
| – | UBX domain-containing protein 1; TAIR: AT1G04850.1 ubiquitin-associated (UBA)/TS-N domain-containing protein; Swiss-Prot: sp|Q6NXA9|UBXN1_DANRE UBX domain-containing protein 1; TrEMBL-Plants: tr|I3S6P1|I3S6P1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0373500_LC | 18 | ||
| – | UBX domain-containing protein 1; TAIR: AT1G04850.1 ubiquitin-associated (UBA)/TS-N domain-containing protein; Swiss-Prot: sp|Q6NXA9|UBXN1_DANRE UBX domain-containing protein 1; TrEMBL-Plants: tr|I3S6P1|I3S6P1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0373500_LC | 14 | ||
| – | ATP-dependent RNA helicase DeaD; TAIR: AT5G27680.1 RECQ helicase SIM; Swiss-Prot: sp|Q9FT69|RQSIM_ARATH ATP-dependent DNA helicase Q-like SIM; TrEMBL-Plants: tr|G7I8P0|G7I8P0_MEDTR RecQ family ATP-dependent DNA helicase; Found in the gene: LotjaGi5g1v0222800 | 28 | ||
| – | RAD23 UV excision repair family protein; TAIR: AT3G02540.1 Rad23 UV excision repair protein family; Swiss-Prot: sp|Q84L31|RD23C_ARATH Ubiquitin receptor RAD23c; TrEMBL-Plants: tr|A0A0L9U0N9|A0A0L9U0N9_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0340800 | 16 | ||
| – | DNA damage-inducible protein 1; TAIR: AT3G13235.3 ubiquitin family protein; Swiss-Prot: sp|Q0U3Y6|DDI1_PHANO DNA damage-inducible protein 1; TrEMBL-Plants: tr|K7MQF1|K7MQF1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0138100 | 28 | ||
| – | Ubiquitin-associated domain-containing family protein; TAIR: AT2G26920.1 Ubiquitin-associated/translation elongation factor EF1B protein; Swiss-Prot: sp|Q9BSL1|UBAC1_HUMAN Ubiquitin-associated domain-containing protein 1; TrEMBL-Plants: tr|A0A0B2R8I6|A0A0B2R8I6_GLYSO Uncharacterized protein; Found in the gene: LotjaGi6g1v0187600 | 8 | ||
| – | NEDD8 ultimate buster 1; TAIR: AT2G12550.1 ubiquitin-associated (UBA)/TS-N domain-containing protein; Swiss-Prot: sp|P54729|NUB1_MOUSE NEDD8 ultimate buster 1; TrEMBL-Plants: tr|I3T8K0|I3T8K0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0209700 | 17 | ||
| – | Smr domain-containing protein, putative; TAIR: AT3G15390.1 silencing defective 5; Swiss-Prot: sp|Q9LUQ3|SDE5_ARATH Putative nuclear RNA export factor SDE5; TrEMBL-Plants: tr|I1M254|I1M254_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0333100 | 9 |
A list of co-occurring predicted domains within the L. japonicus gene space:
| Predicted domain | Source | Observations | Saturation (%) |
|---|---|---|---|
| mobidb-lite | MobiDBLite | 1 | 1.20 |