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IPR034078 is a Transcription factor NFX1 family.
<p>This family of transcription factors is conserved from yeast to human. It is named after human NF-X1, a transcription factor that regulates the expression of class II major histocompatibility complex (MHC) genes [[cite:PUB00003109], [cite:PUB00082548]]. The Drosophila homologue shuttle craft (STC) has been shown to be a DNA- or RNA-binding protein required for proper axon guidance in the central nervous system [[cite:PUB00082545]] and the yeast homologue FAP1 encodes a dosage suppressor of rapamycin toxicity [[cite:PUB00082546]].</p>
This description is obtained from EB-eye REST.
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. |
| Transcript | Name | Description | Predicted domains | Domain count |
|---|---|---|---|---|
| – | PREDICTED: NF-X1-type zinc finger protein NFXL1-like [Glycine max] gi|356527906|ref|XP_003532547.1| | 14 | ||
| – | PREDICTED: NF-X1-type zinc finger protein NFXL1-like [Cicer arietinum] gi|502163239|ref|XP_004512772.1| | 18 | ||
| – | PREDICTED: NF-X1-type zinc finger protein NFXL2-like [Cicer arietinum] gi|502129986|ref|XP_004500492.1| | 16 | ||
| – | PREDICTED: NF-X1-type zinc finger protein NFXL2-like [Cicer arietinum] gi|502129986|ref|XP_004500492.1| | 12 | ||
| – | NF-X1-type zinc finger protein NFXL1; TAIR: AT1G10170.2 NF-X-like 1; Swiss-Prot: sp|Q9SY59|NFXL1_ARATH NF-X1-type zinc finger protein NFXL1; TrEMBL-Plants: tr|A0A1J7GX75|A0A1J7GX75_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0192800 | 17 | ||
| – | NF-X1-type zinc finger protein NFXL1; TAIR: AT1G10170.1 NF-X-like 1; Swiss-Prot: sp|Q9SY59|NFXL1_ARATH NF-X1-type zinc finger protein NFXL1; TrEMBL-Plants: tr|A0A1J7GX75|A0A1J7GX75_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0465300 | 15 | ||
| – | NF-X1-type zinc finger protein NFXL2; TAIR: AT5G05660.1 NF-X1-type zinc finger protein NFXL2; Swiss-Prot: sp|Q9FFK8|NFXL2_ARATH NF-X1-type zinc finger protein NFXL2; TrEMBL-Plants: tr|G7JBA9|G7JBA9_MEDTR NF-X1-type zinc finger protein NFXL2; Found in the gene: LotjaGi6g1v0075600 | 17 | ||
| – | NF-X1-type zinc finger protein NFXL2; TAIR: AT5G05660.1 NF-X1-type zinc finger protein NFXL2; Swiss-Prot: sp|Q9FFK8|NFXL2_ARATH NF-X1-type zinc finger protein NFXL2; TrEMBL-Plants: tr|G7JBA9|G7JBA9_MEDTR NF-X1-type zinc finger protein NFXL2; Found in the gene: LotjaGi6g1v0075600 | 18 |
A list of co-occurring predicted domains within the L. japonicus gene space:
| Predicted domain | Source | Observations | Saturation (%) |
|---|---|---|---|
| mobidb-lite | MobiDBLite | 1 | 12.50 |