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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0465300 |
| Transcript ID | LotjaGi4g1v0465300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | NF-X1-type zinc finger protein NFXL1; TAIR: AT1G10170.1 NF-X-like 1; Swiss-Prot: sp|Q9SY59|NFXL1_ARATH NF-X1-type zinc finger protein NFXL1; TrEMBL-Plants: tr|A0A1J7GX75|A0A1J7GX75_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0465300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:83550708..83555157) extracted from Lotus japonicus Gifu genome v1.2.
TCTTTGTTTTGGTATAAATAAATAAACCTTCGCTTCTCTTCTCCTATCTCACCTCAGTCAGTCCTCAATCTCATCCTTCT TAATTTCATTCTTCAAAGGATCGATCACACCCACTCTCACTGCAACCAATCAGGTTTTGAGTTTGACAGACTTGATTTCT TATTTCTTTATTTATTTGTTCAACTAATTTTATTTAATTTTCCTTCACTCCGATAACCTACATCTGTTATATGATTAACA ATCAATAATTAATATAGACATACATGGTTTTTGAAAGTAATTGATCTTACTCAATTTGCTTTATGAATATTTACCTTTCC CATCTATATGTATATTAGGACGAAGCTAGCAATGATTTCTTTAAATTAAACTTTTTTAATTTTGTATAGTTGGAGGGCGG ATGAGTTTGCAGAGGAGGGATGATAGGTACAGGAGGGTGCAACGAGTTCGTAATCCAGCATCCACCAAAAACAACCACTG CCAAACACAATTACATGAAAATGGTGATGTTGGTTGCTCAAATCCACCTAGAAGTCGTTGTGAAGAGGAGGAGAATTTAC CTCACCTGCTTCAAGAGATTCAGGACAAGCTCACCAAAGACGATGTGGAATGCATGATTTGCTATGACAAGGTTTGCAGG TCTGCTCCAGTCTGGTCATGCTCCAGTTGCTACTCCATATTTCACCTACATTGTGTAAAGAAGTGGGCTCGAGCACCTTC TTCCATTGATTTGTCCGTAGAGATAAAGATTAACTGGCGCTGCCCTGGTTGCCAGTCCGTGCAACTCACATCATCCAAGG AGATCAGCTATGTTTGCTTCTGTGGAAAGATACCAGACCCACCATGTGACTTTTATCTCACACCGCATTCATGTGGAGAA CCATGTGGGAAGCCTCTTAGTGATCTTAAGTTCAAGAATAAGGAGGAGGAGGATCATCTTTGCCCTCATCTTTGCGTCTT GCAATGCCACCCCGGTCCATGCCCTCCTTGCAAGGCATTTGCTTCACCATGTTTGTGTCCTTGCGGGAAGCAAACCATCA CCACTCGTTGCTCTGACCGCCCCACCTGTGGCCACCGTTGCAATAAGCTTCTTCAATGCGCCCGTCATTGTTGTCAGCAA ATTTGCCATTTGGGTCCTTGTGGCCCCTGCCGTTTTCCAATCAACGCCTCTTGCTTTTGCAACAAAAAGATGGAGGTTAT TCTTTGCGGGGACTTGACAGTGAAAGGTGAATTTGAAGCACAAGGTGGAGCTTTTTCTTGCAGTTCCACGTGTGGAAAGA AACTTGCTTGTGGCAATCATGCCTGTACTGAGACTTGTCACCCAGGAAGTTGTGCAGAGTGTATCTCGTCAATAACTCAT GTTAAAACATGTTGTTGTGGGAAAGCTAAATTGGAGGAGCAACGACATAGTTGTTTAGACCAAATTCCCACGTGTTCACA AGCATGTGGCAAGTCCTTGCCTTGCGGGATGCATCAATGTAAACAGGCTTGTCATGCATGGGATTGTGCTCCTTGTTTGG TTCTAGTCTCCCAAAGGTGTCGATGTGGCTCAATTTCCCGAGCCGTGGAGTGTTGTAAGACAACATCAGAGAATGAGAAA TTCACTTGTGAAAAGCCTTGTGGGCAGAAAAAGAGTTGTGGAAGACACCGATGCAATGAACAATGTTGTCTTCTTTCCAA TCCAAATGCAAATTGGGATCCACACCTCTGTTCTGTGCCATGTGGAAAGAAGCTAAGATGCGGCCAGCATGTATGTGAAT CCTTATGTCACCGCGGCTATTGTCCACCTTGTGTTGAAACTATATTCACTGATCTGACATGTGCATGTGGAAAGACTTCA ATCCCTCCTCCGTTGCCTTGCGGAACAACGCTTCCTTCATGCCAGCTTCCATGCTCTGTTCCTCAGCCTTGCCACCATCC AACCTCCCATAACTGCCATTGTGGAGATTGTCCTCCTTGCACAGTGCTAGTAGCAAAAGAATGTGTTGGTGGGCACGTAG TTGTCAGGAACATGCCTTGTGGTTCAAAAGATATTAGGTGCAATGAGCTCTGTGGGAAGACCAGAAAGTGTGGTTTACAT GCTTGTGGCAGAGCATGCCACCCTCCACCTTGTGATGATCACTCTACCGTGGAAGGTGTCCATGGTTCTTGTGGGCAAAC ATGTGGTGCCCCTAGGAAGGACTGTCGGCACATGTGTATAGCTCCATGTCACCCTTCATCTCCATGTCCAGATATCATAT GCCAATTTCAGGTCACAATTGCTTGTTCTTGTGGCCGAATAACAGCAAATGTTCCTTGTGACGCGGGTGGTAGTCGTAGT CGTGCCTTACATGAAGCTTCAATTATTCAAAAATTGCTACTTCAACCATTGGATGACAATGACAAAAAAAGTCCACTGGG ACAAAGAAAACTTATGTGCAATGATGAGTGTTCTAAGTGGGAGCGTAAAAGAGTTCTTGCACGTGCTTTTGAGATTACCT CACAAAAGTTGGATTCTCTCCAGTTCGGTGAAAATTATGAATCGCTGGCTTATTTGTTGAGACGTGATTCAAAATGGGTT TTATCAATTGAGGAGAGATGCAAGTTTTTAGTACTTGGAAAGAGTAGAGGAACTACAACACGAGGTTTAAAAGCCCACAT TTTCTGCCCCATGCTAAAGGATAAGAGAGATGTAGTGAAGTTGATTGCTGAAAGATGGAAGCTTTCAGTGAGTACATGTG GTTGGGAGGCAAAGAGTTTCATCGTGGTTCATGTTACCAAAAAATCAAGACCTCCAACACGAGTGCTAGGGGTAAAAGGT GTCTATGCGTCTCTTGACTCTCTTCCTCCAGCATTTGATCATTTGGTAGACATGGACCCTCGACTTGTTGTCTCTTTTCT AGAGTTACCGAGGGATGCAGATATTAGTGCACTGGTGTTGAGATTTGGTGGTGAGTGTGAACTTGTTTGGTTAAATAACA AGAATGCATTGGCTGTTTTTAATGATCATGCCCGAGCGGCAACTGCAATTAGGAGGTTGGATCATGGAACTGTATTCCAA GGTGCTGTTGTGATTGTTGGAAAATCTTCAGTTGTTAAGAATGCATGGGGAGGATCTGGTGGTGCAATGAATGGAGGAGA AACAAAGGGTAATTCATGGAAAAATGTTGTTGGTTGGGGTGAAGATGAGGATTTGGTTACTAATATCCAACCAACTATGT GGAAGAAATTAGAAGCCCCAATATCTGCTTCATTGAATCCTTGGAGTGTCTTAGATCAAGTATCGTCTTCAAGTTCATGA GTTGAAGCTGAAGTTTCTAGGAAACACACTGAAAGTAATGTCATCACTCATGATGGTGGTTCGTATCTGGAAGTGTTGCA TGGTGGAAACTTTGACGCATAGGAAGTTTATGATGTTATAGATGATTGGGAGAAAACTTTTGATTGTGAATAATTGGTGC ATTCCCATGTTTTGGAAACTTTGAGTTTTGATTGATTCACACCTACCTTTTTTATCTATCTTATTTTAAAATAACATTTT TTTAATATTACTAGTTTCTTTTCCTACCACATCACACATTATACATTTGATCTCTCTCTTCTCTTCTTATATCTCTTTAG ATGTGGACAACCCATCCTTTCCCATGATTGTCCACAATAATTGATTTTTTCAAAGAAAATTAATTAATCAATGGTTTAAA TATGTTATAGTCCCTTGCAATATAAGGTCTTATCTAAATTTGTCATTTCTATAGGTTTTGGTCCTAATTTTTAATTAATC AATGATTTTGCATCGAGTCAGCACTCACACGGTGGATCTAGGCATCTAGCTAAGAGAGTTTAAGTAGACTTTTAGTATCA GTTTTGTACCTCCAAAATTTCTTTCACGTCATCCTATTTCCTCAACTTACATGAAACCATTCTCCCTCTCCACCACACCA GCCACCCCTAACATCCTCTTTCTCACCTCATTCCACCCTTGATTTTAGCCACCAACAACCGCGCTTGATCACCGCAAAAC CTTTCATCCCACCTCGACGACCACCACATCCCCAACCTGTATTTCTCTCTCCACCCCCTTTCTCATCCCTTCCTCAATTG GGAAAAAAATTTAATGGGCCATGTAAGCATTATAACTTCGTTGTCCTAATTTCAAATATTTTTTATTCTTTCATGTTGCA TCAGAAGAAGTCATGGTGGTTGCCTCTTAAAAGAGATAAATGTAAGTGTTAGATGAGATAAAAAATAAAAAAAGTTGTCA GAAAAATAAAATTAAAATAATTACCAAGGTATTGAGTAATCTTAGCAATTGTCCAATTGATTAGCTCTTGTTTATTAGGA CCCTACATATGCTTGTAAGGGGTTTTCAATTTTTATCTCCGTGATGGTTTTGTTGCCATCCACCCCTCTTCCCAAGGCAT CCGATAACCTTACACCCAATCTTGTAAGAAATGATTTAAAGATGAGTTTA
CDS sequence (LotjaGi4g1v0465300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGTTTGCAGAGGAGGGATGATAGGTACAGGAGGGTGCAACGAGTTCGTAATCCAGCATCCACCAAAAACAACCACTG CCAAACACAATTACATGAAAATGGTGATGTTGGTTGCTCAAATCCACCTAGAAGTCGTTGTGAAGAGGAGGAGAATTTAC CTCACCTGCTTCAAGAGATTCAGGACAAGCTCACCAAAGACGATGTGGAATGCATGATTTGCTATGACAAGGTTTGCAGG TCTGCTCCAGTCTGGTCATGCTCCAGTTGCTACTCCATATTTCACCTACATTGTGTAAAGAAGTGGGCTCGAGCACCTTC TTCCATTGATTTGTCCGTAGAGATAAAGATTAACTGGCGCTGCCCTGGTTGCCAGTCCGTGCAACTCACATCATCCAAGG AGATCAGCTATGTTTGCTTCTGTGGAAAGATACCAGACCCACCATGTGACTTTTATCTCACACCGCATTCATGTGGAGAA CCATGTGGGAAGCCTCTTAGTGATCTTAAGTTCAAGAATAAGGAGGAGGAGGATCATCTTTGCCCTCATCTTTGCGTCTT GCAATGCCACCCCGGTCCATGCCCTCCTTGCAAGGCATTTGCTTCACCATGTTTGTGTCCTTGCGGGAAGCAAACCATCA CCACTCGTTGCTCTGACCGCCCCACCTGTGGCCACCGTTGCAATAAGCTTCTTCAATGCGCCCGTCATTGTTGTCAGCAA ATTTGCCATTTGGGTCCTTGTGGCCCCTGCCGTTTTCCAATCAACGCCTCTTGCTTTTGCAACAAAAAGATGGAGGTTAT TCTTTGCGGGGACTTGACAGTGAAAGGTGAATTTGAAGCACAAGGTGGAGCTTTTTCTTGCAGTTCCACGTGTGGAAAGA AACTTGCTTGTGGCAATCATGCCTGTACTGAGACTTGTCACCCAGGAAGTTGTGCAGAGTGTATCTCGTCAATAACTCAT GTTAAAACATGTTGTTGTGGGAAAGCTAAATTGGAGGAGCAACGACATAGTTGTTTAGACCAAATTCCCACGTGTTCACA AGCATGTGGCAAGTCCTTGCCTTGCGGGATGCATCAATGTAAACAGGCTTGTCATGCATGGGATTGTGCTCCTTGTTTGG TTCTAGTCTCCCAAAGGTGTCGATGTGGCTCAATTTCCCGAGCCGTGGAGTGTTGTAAGACAACATCAGAGAATGAGAAA TTCACTTGTGAAAAGCCTTGTGGGCAGAAAAAGAGTTGTGGAAGACACCGATGCAATGAACAATGTTGTCTTCTTTCCAA TCCAAATGCAAATTGGGATCCACACCTCTGTTCTGTGCCATGTGGAAAGAAGCTAAGATGCGGCCAGCATGTATGTGAAT CCTTATGTCACCGCGGCTATTGTCCACCTTGTGTTGAAACTATATTCACTGATCTGACATGTGCATGTGGAAAGACTTCA ATCCCTCCTCCGTTGCCTTGCGGAACAACGCTTCCTTCATGCCAGCTTCCATGCTCTGTTCCTCAGCCTTGCCACCATCC AACCTCCCATAACTGCCATTGTGGAGATTGTCCTCCTTGCACAGTGCTAGTAGCAAAAGAATGTGTTGGTGGGCACGTAG TTGTCAGGAACATGCCTTGTGGTTCAAAAGATATTAGGTGCAATGAGCTCTGTGGGAAGACCAGAAAGTGTGGTTTACAT GCTTGTGGCAGAGCATGCCACCCTCCACCTTGTGATGATCACTCTACCGTGGAAGGTGTCCATGGTTCTTGTGGGCAAAC ATGTGGTGCCCCTAGGAAGGACTGTCGGCACATGTGTATAGCTCCATGTCACCCTTCATCTCCATGTCCAGATATCATAT GCCAATTTCAGGTCACAATTGCTTGTTCTTGTGGCCGAATAACAGCAAATGTTCCTTGTGACGCGGGTGGTAGTCGTAGT CGTGCCTTACATGAAGCTTCAATTATTCAAAAATTGCTACTTCAACCATTGGATGACAATGACAAAAAAAGTCCACTGGG ACAAAGAAAACTTATGTGCAATGATGAGTGTTCTAAGTGGGAGCGTAAAAGAGTTCTTGCACGTGCTTTTGAGATTACCT CACAAAAGTTGGATTCTCTCCAGTTCGGTGAAAATTATGAATCGCTGGCTTATTTGTTGAGACGTGATTCAAAATGGGTT TTATCAATTGAGGAGAGATGCAAGTTTTTAGTACTTGGAAAGAGTAGAGGAACTACAACACGAGGTTTAAAAGCCCACAT TTTCTGCCCCATGCTAAAGGATAAGAGAGATGTAGTGAAGTTGATTGCTGAAAGATGGAAGCTTTCAGTGAGTACATGTG GTTGGGAGGCAAAGAGTTTCATCGTGGTTCATGTTACCAAAAAATCAAGACCTCCAACACGAGTGCTAGGGGTAAAAGGT GTCTATGCGTCTCTTGACTCTCTTCCTCCAGCATTTGATCATTTGGTAGACATGGACCCTCGACTTGTTGTCTCTTTTCT AGAGTTACCGAGGGATGCAGATATTAGTGCACTGGTGTTGAGATTTGGTGGTGAGTGTGAACTTGTTTGGTTAAATAACA AGAATGCATTGGCTGTTTTTAATGATCATGCCCGAGCGGCAACTGCAATTAGGAGGTTGGATCATGGAACTGTATTCCAA GGTGCTGTTGTGATTGTTGGAAAATCTTCAGTTGTTAAGAATGCATGGGGAGGATCTGGTGGTGCAATGAATGGAGGAGA AACAAAGGGTAATTCATGGAAAAATGTTGTTGGTTGGGGTGAAGATGAGGATTTGGTTACTAATATCCAACCAACTATGT GGAAGAAATTAGAAGCCCCAATATCTGCTTCATTGAATCCTTGGAGTGTCTTAGATCAAGTATCGTCTTCAAGTTCATGA
Protein sequence (LotjaGi4g1v0465300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSLQRRDDRYRRVQRVRNPASTKNNHCQTQLHENGDVGCSNPPRSRCEEEENLPHLLQEIQDKLTKDDVECMICYDKVCR SAPVWSCSSCYSIFHLHCVKKWARAPSSIDLSVEIKINWRCPGCQSVQLTSSKEISYVCFCGKIPDPPCDFYLTPHSCGE PCGKPLSDLKFKNKEEEDHLCPHLCVLQCHPGPCPPCKAFASPCLCPCGKQTITTRCSDRPTCGHRCNKLLQCARHCCQQ ICHLGPCGPCRFPINASCFCNKKMEVILCGDLTVKGEFEAQGGAFSCSSTCGKKLACGNHACTETCHPGSCAECISSITH VKTCCCGKAKLEEQRHSCLDQIPTCSQACGKSLPCGMHQCKQACHAWDCAPCLVLVSQRCRCGSISRAVECCKTTSENEK FTCEKPCGQKKSCGRHRCNEQCCLLSNPNANWDPHLCSVPCGKKLRCGQHVCESLCHRGYCPPCVETIFTDLTCACGKTS IPPPLPCGTTLPSCQLPCSVPQPCHHPTSHNCHCGDCPPCTVLVAKECVGGHVVVRNMPCGSKDIRCNELCGKTRKCGLH ACGRACHPPPCDDHSTVEGVHGSCGQTCGAPRKDCRHMCIAPCHPSSPCPDIICQFQVTIACSCGRITANVPCDAGGSRS RALHEASIIQKLLLQPLDDNDKKSPLGQRKLMCNDECSKWERKRVLARAFEITSQKLDSLQFGENYESLAYLLRRDSKWV LSIEERCKFLVLGKSRGTTTRGLKAHIFCPMLKDKRDVVKLIAERWKLSVSTCGWEAKSFIVVHVTKKSRPPTRVLGVKG VYASLDSLPPAFDHLVDMDPRLVVSFLELPRDADISALVLRFGGECELVWLNNKNALAVFNDHARAATAIRRLDHGTVFQ GAVVIVGKSSVVKNAWGGSGGAMNGGETKGNSWKNVVGWGEDEDLVTNIQPTMWKKLEAPISASLNPWSVLDQVSSSSS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 959 | 959 | 0.0 | – | |
| PANTHER | 1 | 959 | 959 | 0.0 | ||
| SUPERFAMILY | 60 | 129 | 70 | 4.24E-5 | – | |
| ProSiteProfiles | 68 | 127 | 60 | 8.591 | ||
| CDD | 70 | 125 | 56 | 2.60919E-18 | – | |
| ProSiteProfiles | 71 | 125 | 55 | 9.229 | ||
| ProSitePatterns | 71 | 124 | 54 | - | ||
| SMART | 181 | 199 | 19 | 0.29 | ||
| Pfam | 183 | 198 | 16 | 7.2 | ||
| Pfam | 223 | 230 | 8 | 150.0 | ||
| CDD | 223 | 271 | 49 | 1.54793E-9 | – | |
| SMART | 233 | 252 | 20 | 0.74 | ||
| Pfam | 233 | 251 | 19 | 0.058 | ||
| CDD | 287 | 340 | 54 | 1.62697E-7 | – | |
| Pfam | 297 | 314 | 18 | 6.4E-4 | ||
| SMART | 297 | 316 | 20 | 0.025 | ||
| CDD | 345 | 393 | 49 | 5.06287E-9 | – | |
| SMART | 355 | 374 | 20 | 0.005 | ||
| Pfam | 355 | 372 | 18 | 0.0011 | ||
| SMART | 413 | 443 | 31 | 150.0 | ||
| Pfam | 413 | 423 | 11 | 38.0 | ||
| CDD | 437 | 489 | 53 | 5.26518E-9 | – | |
| SMART | 447 | 466 | 20 | 0.001 | ||
| Pfam | 447 | 464 | 18 | 9.7E-5 | ||
| SMART | 504 | 522 | 19 | 43.0 | ||
| Pfam | 512 | 521 | 10 | 130.0 | ||
| SMART | 557 | 586 | 30 | 15.0 | ||
| Pfam | 557 | 572 | 16 | 5.7 | ||
| SMART | 595 | 616 | 22 | 0.41 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi4g1v0465300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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