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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0192800 |
| Transcript ID | LotjaGi2g1v0192800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | NF-X1-type zinc finger protein NFXL1; TAIR: AT1G10170.2 NF-X-like 1; Swiss-Prot: sp|Q9SY59|NFXL1_ARATH NF-X1-type zinc finger protein NFXL1; TrEMBL-Plants: tr|A0A1J7GX75|A0A1J7GX75_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0192800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:62482599..62487046) extracted from Lotus japonicus Gifu genome v1.2.
CAAACAAACAAGCCCAAAGCCCCATTTCCTAGAGTTGAGGGTCAGTTCACAAACACCAGAATCAATAATCAACTATTCTT CATAGTATTGTACTCCATTTTGGCTCCTCCAACCGACTCCAGAAAACACTCACAATATCGCATATATAAAAGCCAAAACA CACAACACTCTCTCTCACATTCGTAATCGCATCCCAAATTTCAGACACAACACAATCGGAGCACTCACAAATTCTCGTCG CTTCTCTTCCCTTCGCCTTCAGGTACCACCGCTCTTCCCTTCTTCTCTCTGCTTATTTTTCTCTCATCGCGTTAAATCAA TATCAAAATCTCGTACAGTTCTTAGGTTTTCTCTTTTCATTTCTGGACTTTTGATTTTCATGCTTGATTTTGCATTCGAG ATTGATCATCTGTTAGTGTGTGTTTGTTTGCATGTGGGTGTTGTTGAATTCAGCTCATTTTTGTGATTTGGATTTTGGGT ATTGAAGGAACATCGAGAAGGCATGAGCTTGCAATCTCGAAGAGAACGGAGGGATCGACCTAGGGTTCCATCACAAGCTG CTGCTGCTGCTGCTCCTCGTCAGCAATGGGTTCCCAGAGGGAGTGCAGCAGGAGGAGGAGCATCATCCAACAACACTGTT CTGCCGCCGCAGCCATCCATTTCAATTCCTCATCCATATCAGAATGCTGTTGCTGCTGGTTCCTCCGATCAAGGGGTTGC TGCTGCTGTGGCTGCGGCTGCTCCACCGGCTGCGGCTCACCGTAGAAACAATCAGAAGGTGGAAAGGGAGAGGGAGAGGG AGAGGGATAGAGGGAAAAGCAGGAATCAGCCGGGGAGGGAAGTGGGACTCAGAGACACTAGTTTGCCTCAGTTGGTGCAG GAGATTCAGGAGAAGCTGATGAGAGGAACTGTGGAATGCATGATTTGCTATGACATGGTTGGGAGGTCTGCGGCTATTTG GTCTTGCTCGAGCTGCTACTCAATTTTTCACCTGAGTTGCATCAAGAAGTGGGCACGGGCACCCACCTCGGTTGATTTGA CGGCGGACAAGGATCAAGGGTTTAATTGGCGGTGTCCAGGTTGTCAATATGTGCAGCGGACGTCTCATAGGGAGATTAGG TATGTTTGCTTTTGTGGGAAGAGGCCAGACCCTCCTTCTGATTTATATCTGACACCGCATTCTTGTGGGGAGCCGTGTGG GAAGCCTCTTGAGAAGGAGGTGTTGGCTGCAGGAGGGAGAGAGGATGATCTTTGCCCTCATGTTTGTGTCTTGCAATGCC ATCCAGGTCCTTGCCCTCCTTGTAAAGCATTTGCCCCTCCGCGCTTGTGCCCTTGTGGGAAGAAAAGAATCACCACCCGT TGTTCTGATCGGAAGTCTGTTCTTACCTGTGGCCAGTGCTGTGATAAGCTTCTTGAATGTGGACGGCATCGGTGTCAACA GACTTGTCATGTGGGTCCTTGCGGTCCTTGTCAGGTTTTGTTCAAGGCCTCTTGCTTTTGCAGTAAAACTACTGAGGTTC TTGGTTGTGGGGACATGGTGGTGAAAGGTGAATTGAAGGAAGAAGGTGGAGTTTTTTCTTGTAGTTCCAGCTGTGGGAAG AAACTTGGTTGTGGTAATCATGTTTGTAGTGATATGTGTCACCCAGGCAGTTGCGGGGAATGTGAGCTTTTACCAAGCCG GGTTAAGACATGCTGTTGCGGGAAGACAAGATTGGAGGTGGATCGTGAAAGTTGTTTGGATCCAATACCCACCTGCTCAC AGGTATGTGACAAGCTTCTCCATTGCGGGAAACATACTTGTAAGGAGCATTGTCATGTTGGTGAGTGTCCTCCGTGTTTA GTTCTAGTTTCACAGAAATGTCGCTGTAGCTCCACTTCACGAACTGTGGAGTGCTTTAAGACAGTAATGGAGAATCAGAT GTTTACCTGTGAAAAGCCTTGTGGGAGAAAAAAGAACTGTGGGAGGCATCGATGTAGTGAAAAGTGTTGTCCACTTTCTA ATCCAAACAATAATTTAAGAGAGGGTTGGGATCCTCATTTTTGTTCAATGCCCTGTGGAAAGAAACTAAGATGTGGCCAG CATGCTTGTGAGTCATTGTGTCACAGTGGCCATTGCCCACCTTGTCTTGAAACGATATTCACTGATTTATCATGTGCTTG TGGTAGGACTTCAATTCCTCCTCCTCTTCCTTGTGGTACACCGCCTCCTTCATGTCAGCTTCCTTGTTCAGTTGCTCAGC CGTGTGGCCATGCAGGCTCTCATAGTTGCCATTTTGGAGACTGCATTCCTTGTCCAGTGCCAGTGGCTAAAGAATGTATT GGTGGGCATGTAGTTCTTAGAAATATACCCTGTGGCTCAAAGGATATCAGATGCAATAATCCATGTGGAAGGACCAGACA GTGTGGTTTACATGCATGCGGCAGAACATGTCACCCCCCACCTTGTGATAGTCTATCTGGTGGTGTGCAAGGTTTCCAAG CACCATGTGGCCAAACGTGCAGTGCTCCAAGGAGAGACTGCCGGCATACATGTATGGCTCCATGCCACCCTTCATCTCCT TGCCCTGATATAAAATGTGAATTCCCTGTTACAATCACTTGTTCTTGTGGCCGTATAACAGCAAGTGTTCCTTGTGATGC TGGTGGTAGCATTAGTAATTACAATGCTGATGCCATTCATGAAGCTTCCATTGTTCAAAAATTGCCTGTGCCACTTCAAC CAGTTGATTCAAATGGCAGAAAAGTTCCCCTTGGACAAAGAAAGTTGATGTGTGATGAGGAATGTGCAAAGTATGAGCGT AAAAAGGTTCTTGCTGATGCTTTTGACATCACTTCAGGTCTGGATTCTCTCCATTTTGCTGAGAGCTCTGTTTCTGAATT GCTCTCTGATATGTTCAGACGTGATCCAAAATGGGTTTTAGCTGTGGAGGAGAGATGCAAATTTTTGGTACTTGGCAAGA GTAGAGGAACTACACATGGTTTAAAAGTCCATGTTTTTTGTCCTATGCTGAAAGATAAAAGAGATGCAGTGAGATTGATT GCTGAAAGATGGAAGCTTGCAGTGAACGCTGCTGGTTGGGAGCCAAAGCGGTTTATTGTAATATCTGTTACCCAAAAATC AAAAGCCCCAGCTCGCGTGCTAGGAGTTAAGGGCACCACAACATTGAACACACTCTTTCCTCCTGCATTTGATCCCTTGG TAGATATGGACCCTCGACTTGTTGTTTCATTTCCAGACTTACCAAGGGATGCTGATATTAGTGCTTTGGTGTTGAGATTT GGTGGTGAGTGTGAGCTTGTTTGGTTGAATGACAAGAATGCTTTAGCTGTTTTTCACGATCCTGCCCGAGCTGCAACTGC AATGAGGAGATTGGATCATGGAAAAGTTTATCAGGGCGCTGTGTCAGTCGTCCCAAATGCCGGGGCATCAGCGGCATCTT CAGCTACCAATGCTTGGGGAGGAACCGGGACAGTGAAAGAGGGAGGAGCTTTGACTGCATTGAAAGGTAATCCGTGGAAA AAAGCTGTGGTTCAAGAGGCTGGTCGGAAAGAAGATTCTTGGGGGGATGAAGAATGGGCTACTACTGGTTCTGCTAATAT ACAGCCATCTGTTTTGAAGAAAGCAGCTCCAATAACTGCTTCACTAAATCGTTGGAATGTCTTAAACCAGGAATCAAGTT CGAGTTCATCGGTTACAACAGGTAGAGCTGAAGTTTCTGGGAAACAGAAAGAAAGCAGTGCTGTCTCAAAGTCGGTGTCT GATGCAGGTGGCTCAAATGAAGAAGGGAAGCAACATGGAGATAATTCAGATGCAGCAGAGGTTCCTGAAGTAGTAGATGA TTGGGAGAAGGCTTATGAATGAGGAAAGGAAGGGACAGGTAGCAAACAGTTTTTATTGTTAGAAATTTTATCCTTCGAAA ATTAGACATGAAGCAAAAGGCCTCTTTGCCTAGATTTATCTTTTTTTTTTGGCAACTTGAGGTTATTTATGTTTTGAATT CGAAGTCATTGGATTGTTAATAGACAGATTGAAAGATAGGGTATCAGGGTATAGAAAAACTGCAGTTTGTAAAAGAGATT TGCATTTAGTTTATCAAAGACCTTTTTAGACTGAAAATCCATTTATGAATCGATCAAGTTTCGATTTCGATGAAAGAAAG TCATCAGAGTTATGACTCCAAGGGCCTCTTCCGATCCTAGGCTGCAATTTACATATGCAGCCACTGACAGTGAGCTTAGC AGAGTAATCTGCTCGATGTGTAGTTAAAACGAAGCGAAAATCTTACTTTTTTTCTTGTTCCTCTTGGTATAGCAATTTGC AAATGCTTTTAACATTTGCTGATGGCATATTATGCAGTCATGAATCTAGTCGCCATGCTAATTCAAGTTTTTTCCTTAGT TGGGTAAGATCAAGTATTTTTTATTCAAATGGAATGGATTTATTTCAG
CDS sequence (LotjaGi2g1v0192800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGCTTGCAATCTCGAAGAGAACGGAGGGATCGACCTAGGGTTCCATCACAAGCTGCTGCTGCTGCTGCTCCTCGTCA GCAATGGGTTCCCAGAGGGAGTGCAGCAGGAGGAGGAGCATCATCCAACAACACTGTTCTGCCGCCGCAGCCATCCATTT CAATTCCTCATCCATATCAGAATGCTGTTGCTGCTGGTTCCTCCGATCAAGGGGTTGCTGCTGCTGTGGCTGCGGCTGCT CCACCGGCTGCGGCTCACCGTAGAAACAATCAGAAGGTGGAAAGGGAGAGGGAGAGGGAGAGGGATAGAGGGAAAAGCAG GAATCAGCCGGGGAGGGAAGTGGGACTCAGAGACACTAGTTTGCCTCAGTTGGTGCAGGAGATTCAGGAGAAGCTGATGA GAGGAACTGTGGAATGCATGATTTGCTATGACATGGTTGGGAGGTCTGCGGCTATTTGGTCTTGCTCGAGCTGCTACTCA ATTTTTCACCTGAGTTGCATCAAGAAGTGGGCACGGGCACCCACCTCGGTTGATTTGACGGCGGACAAGGATCAAGGGTT TAATTGGCGGTGTCCAGGTTGTCAATATGTGCAGCGGACGTCTCATAGGGAGATTAGGTATGTTTGCTTTTGTGGGAAGA GGCCAGACCCTCCTTCTGATTTATATCTGACACCGCATTCTTGTGGGGAGCCGTGTGGGAAGCCTCTTGAGAAGGAGGTG TTGGCTGCAGGAGGGAGAGAGGATGATCTTTGCCCTCATGTTTGTGTCTTGCAATGCCATCCAGGTCCTTGCCCTCCTTG TAAAGCATTTGCCCCTCCGCGCTTGTGCCCTTGTGGGAAGAAAAGAATCACCACCCGTTGTTCTGATCGGAAGTCTGTTC TTACCTGTGGCCAGTGCTGTGATAAGCTTCTTGAATGTGGACGGCATCGGTGTCAACAGACTTGTCATGTGGGTCCTTGC GGTCCTTGTCAGGTTTTGTTCAAGGCCTCTTGCTTTTGCAGTAAAACTACTGAGGTTCTTGGTTGTGGGGACATGGTGGT GAAAGGTGAATTGAAGGAAGAAGGTGGAGTTTTTTCTTGTAGTTCCAGCTGTGGGAAGAAACTTGGTTGTGGTAATCATG TTTGTAGTGATATGTGTCACCCAGGCAGTTGCGGGGAATGTGAGCTTTTACCAAGCCGGGTTAAGACATGCTGTTGCGGG AAGACAAGATTGGAGGTGGATCGTGAAAGTTGTTTGGATCCAATACCCACCTGCTCACAGGTATGTGACAAGCTTCTCCA TTGCGGGAAACATACTTGTAAGGAGCATTGTCATGTTGGTGAGTGTCCTCCGTGTTTAGTTCTAGTTTCACAGAAATGTC GCTGTAGCTCCACTTCACGAACTGTGGAGTGCTTTAAGACAGTAATGGAGAATCAGATGTTTACCTGTGAAAAGCCTTGT GGGAGAAAAAAGAACTGTGGGAGGCATCGATGTAGTGAAAAGTGTTGTCCACTTTCTAATCCAAACAATAATTTAAGAGA GGGTTGGGATCCTCATTTTTGTTCAATGCCCTGTGGAAAGAAACTAAGATGTGGCCAGCATGCTTGTGAGTCATTGTGTC ACAGTGGCCATTGCCCACCTTGTCTTGAAACGATATTCACTGATTTATCATGTGCTTGTGGTAGGACTTCAATTCCTCCT CCTCTTCCTTGTGGTACACCGCCTCCTTCATGTCAGCTTCCTTGTTCAGTTGCTCAGCCGTGTGGCCATGCAGGCTCTCA TAGTTGCCATTTTGGAGACTGCATTCCTTGTCCAGTGCCAGTGGCTAAAGAATGTATTGGTGGGCATGTAGTTCTTAGAA ATATACCCTGTGGCTCAAAGGATATCAGATGCAATAATCCATGTGGAAGGACCAGACAGTGTGGTTTACATGCATGCGGC AGAACATGTCACCCCCCACCTTGTGATAGTCTATCTGGTGGTGTGCAAGGTTTCCAAGCACCATGTGGCCAAACGTGCAG TGCTCCAAGGAGAGACTGCCGGCATACATGTATGGCTCCATGCCACCCTTCATCTCCTTGCCCTGATATAAAATGTGAAT TCCCTGTTACAATCACTTGTTCTTGTGGCCGTATAACAGCAAGTGTTCCTTGTGATGCTGGTGGTAGCATTAGTAATTAC AATGCTGATGCCATTCATGAAGCTTCCATTGTTCAAAAATTGCCTGTGCCACTTCAACCAGTTGATTCAAATGGCAGAAA AGTTCCCCTTGGACAAAGAAAGTTGATGTGTGATGAGGAATGTGCAAAGTATGAGCGTAAAAAGGTTCTTGCTGATGCTT TTGACATCACTTCAGGTCTGGATTCTCTCCATTTTGCTGAGAGCTCTGTTTCTGAATTGCTCTCTGATATGTTCAGACGT GATCCAAAATGGGTTTTAGCTGTGGAGGAGAGATGCAAATTTTTGGTACTTGGCAAGAGTAGAGGAACTACACATGGTTT AAAAGTCCATGTTTTTTGTCCTATGCTGAAAGATAAAAGAGATGCAGTGAGATTGATTGCTGAAAGATGGAAGCTTGCAG TGAACGCTGCTGGTTGGGAGCCAAAGCGGTTTATTGTAATATCTGTTACCCAAAAATCAAAAGCCCCAGCTCGCGTGCTA GGAGTTAAGGGCACCACAACATTGAACACACTCTTTCCTCCTGCATTTGATCCCTTGGTAGATATGGACCCTCGACTTGT TGTTTCATTTCCAGACTTACCAAGGGATGCTGATATTAGTGCTTTGGTGTTGAGATTTGGTGGTGAGTGTGAGCTTGTTT GGTTGAATGACAAGAATGCTTTAGCTGTTTTTCACGATCCTGCCCGAGCTGCAACTGCAATGAGGAGATTGGATCATGGA AAAGTTTATCAGGGCGCTGTGTCAGTCGTCCCAAATGCCGGGGCATCAGCGGCATCTTCAGCTACCAATGCTTGGGGAGG AACCGGGACAGTGAAAGAGGGAGGAGCTTTGACTGCATTGAAAGGTAATCCGTGGAAAAAAGCTGTGGTTCAAGAGGCTG GTCGGAAAGAAGATTCTTGGGGGGATGAAGAATGGGCTACTACTGGTTCTGCTAATATACAGCCATCTGTTTTGAAGAAA GCAGCTCCAATAACTGCTTCACTAAATCGTTGGAATGTCTTAAACCAGGAATCAAGTTCGAGTTCATCGGTTACAACAGG TAGAGCTGAAGTTTCTGGGAAACAGAAAGAAAGCAGTGCTGTCTCAAAGTCGGTGTCTGATGCAGGTGGCTCAAATGAAG AAGGGAAGCAACATGGAGATAATTCAGATGCAGCAGAGGTTCCTGAAGTAGTAGATGATTGGGAGAAGGCTTATGAATGA
Protein sequence (LotjaGi2g1v0192800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSLQSRRERRDRPRVPSQAAAAAAPRQQWVPRGSAAGGGASSNNTVLPPQPSISIPHPYQNAVAAGSSDQGVAAAVAAAA PPAAAHRRNNQKVERERERERDRGKSRNQPGREVGLRDTSLPQLVQEIQEKLMRGTVECMICYDMVGRSAAIWSCSSCYS IFHLSCIKKWARAPTSVDLTADKDQGFNWRCPGCQYVQRTSHREIRYVCFCGKRPDPPSDLYLTPHSCGEPCGKPLEKEV LAAGGREDDLCPHVCVLQCHPGPCPPCKAFAPPRLCPCGKKRITTRCSDRKSVLTCGQCCDKLLECGRHRCQQTCHVGPC GPCQVLFKASCFCSKTTEVLGCGDMVVKGELKEEGGVFSCSSSCGKKLGCGNHVCSDMCHPGSCGECELLPSRVKTCCCG KTRLEVDRESCLDPIPTCSQVCDKLLHCGKHTCKEHCHVGECPPCLVLVSQKCRCSSTSRTVECFKTVMENQMFTCEKPC GRKKNCGRHRCSEKCCPLSNPNNNLREGWDPHFCSMPCGKKLRCGQHACESLCHSGHCPPCLETIFTDLSCACGRTSIPP PLPCGTPPPSCQLPCSVAQPCGHAGSHSCHFGDCIPCPVPVAKECIGGHVVLRNIPCGSKDIRCNNPCGRTRQCGLHACG RTCHPPPCDSLSGGVQGFQAPCGQTCSAPRRDCRHTCMAPCHPSSPCPDIKCEFPVTITCSCGRITASVPCDAGGSISNY NADAIHEASIVQKLPVPLQPVDSNGRKVPLGQRKLMCDEECAKYERKKVLADAFDITSGLDSLHFAESSVSELLSDMFRR DPKWVLAVEERCKFLVLGKSRGTTHGLKVHVFCPMLKDKRDAVRLIAERWKLAVNAAGWEPKRFIVISVTQKSKAPARVL GVKGTTTLNTLFPPAFDPLVDMDPRLVVSFPDLPRDADISALVLRFGGECELVWLNDKNALAVFHDPARAATAMRRLDHG KVYQGAVSVVPNAGASAASSATNAWGGTGTVKEGGALTALKGNPWKKAVVQEAGRKEDSWGDEEWATTGSANIQPSVLKK AAPITASLNRWNVLNQESSSSSSVTTGRAEVSGKQKESSAVSKSVSDAGGSNEEGKQHGDNSDAAEVPEVVDDWEKAYE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 15 | 15 | - | – | |
| MobiDBLite | 1 | 59 | 59 | - | – | |
| MobiDBLite | 74 | 119 | 46 | - | – | |
| Coils | 83 | 103 | 21 | - | – | |
| MobiDBLite | 88 | 112 | 25 | - | – | |
| PANTHER | 106 | 1119 | 1014 | 0.0 | ||
| PANTHER | 106 | 1119 | 1014 | 0.0 | – | |
| SUPERFAMILY | 128 | 198 | 71 | 4.94E-6 | – | |
| ProSiteProfiles | 136 | 197 | 62 | 8.6 | ||
| CDD | 138 | 195 | 58 | 7.20421E-22 | – | |
| ProSiteProfiles | 139 | 195 | 57 | 9.214 | ||
| ProSitePatterns | 139 | 194 | 56 | - | ||
| CDD | 228 | 289 | 62 | 5.0436E-6 | – | |
| SMART | 251 | 269 | 19 | 0.023 | ||
| Pfam | 253 | 268 | 16 | 8.9 | ||
| CDD | 296 | 344 | 49 | 2.65085E-12 | – | |
| Pfam | 306 | 324 | 19 | 1.4E-5 | ||
| SMART | 306 | 325 | 20 | 1.4E-4 | ||
| CDD | 360 | 406 | 47 | 6.08739E-9 | – | |
| SMART | 370 | 389 | 20 | 3.1E-4 | ||
| Pfam | 370 | 387 | 18 | 0.0063 | ||
| CDD | 418 | 464 | 47 | 2.42764E-12 | – | |
| SMART | 428 | 447 | 20 | 3.9E-4 | ||
| Pfam | 428 | 445 | 18 | 2.5E-4 | ||
| SMART | 486 | 520 | 35 | 260.0 | ||
| Pfam | 486 | 497 | 12 | 8.3 | ||
| CDD | 514 | 557 | 44 | 3.55193E-9 | – | |
| SMART | 524 | 543 | 20 | 4.1E-4 | ||
| Pfam | 524 | 541 | 18 | 1.1E-4 | ||
| SMART | 581 | 599 | 19 | 0.72 | ||
| Pfam | 634 | 649 | 16 | 2.9 | ||
| SMART | 634 | 664 | 31 | 1.7 | ||
| SMART | 673 | 694 | 22 | 0.028 | ||
| Pfam | 673 | 688 | 16 | 94.0 | ||
| MobiDBLite | 1056 | 1091 | 36 | - | – | |
| MobiDBLite | 1056 | 1119 | 64 | - | – | |
| MobiDBLite | 1093 | 1119 | 27 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi2g1v0192800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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