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| Field | Value |
|---|---|
| Gene ID | Lj6g3v0521560 |
| Transcript ID | Lj6g3v0521560.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: NF-X1-type zinc finger protein NFXL2-like [Cicer arietinum] gi|502129986|ref|XP_004500492.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 825 | 825 | – | – | |
| MobiDBLite | 1 | 23 | 23 | – | – | |
| PANTHER | 52 | 495 | 444 | 9.20E-287 | ||
| SUPERFAMILY | 68 | 149 | 82 | 6.29E-05 | – | |
| ProSitePatterns | 71 | 137 | 67 | – | ||
| ProSiteProfiles | 71 | 138 | 68 | 8.565 | ||
| CDD | 172 | 220 | 49 | 3.24E-06 | – | |
| Pfam | 184 | 201 | 18 | 0.069 | ||
| SMART | 184 | 202 | 19 | 0.02 | ||
| SMART | 210 | 232 | 23 | 180 | ||
| CDD | 226 | 274 | 49 | 6.99E-08 | – | |
| Pfam | 236 | 254 | 19 | 2.60E-05 | ||
| SMART | 236 | 255 | 20 | 1.00E-04 | ||
| CDD | 279 | 326 | 48 | 2.25E-09 | – | |
| Pfam | 289 | 307 | 19 | 0.03 | ||
| SMART | 289 | 308 | 20 | 0.0011 | ||
| CDD | 333 | 382 | 50 | 3.09E-08 | – | |
| SMART | 343 | 363 | 21 | 0.32 | ||
| Pfam | 343 | 362 | 20 | 0.0069 | ||
| CDD | 386 | 434 | 49 | 2.22E-07 | – | |
| Pfam | 396 | 413 | 18 | 0.0012 | ||
| SMART | 396 | 415 | 20 | 0.014 | ||
| CDD | 413 | 461 | 49 | 5.91E-10 | – | |
| Pfam | 417 | 441 | 25 | 0.032 | ||
| SMART | 423 | 442 | 20 | 0.14 | ||
| SMART | 480 | 501 | 22 | 34 | ||
| Pfam | 490 | 500 | 11 | 1.1 | ||
| SMART | 509 | 554 | 46 | 87 | ||
| Pfam | 509 | 518 | 10 | 170 | ||
| PANTHER | 547 | 864 | 318 | 9.20E-287 | ||
| SMART | 591 | 623 | 33 | 6.5 | ||
| Pfam | 591 | 601 | 11 | 0.15 | ||
| SMART | 633 | 651 | 19 | 0.067 | ||
| Pfam | 635 | 650 | 16 | 2.1 | ||
| SMART | 696 | 718 | 23 | 39 | ||
| MobiDBLite | 785 | 805 | 21 | – | – | |
| Phobius | 826 | 844 | 19 | – | – | |
| TMHMM | 826 | 848 | 23 | – | – | |
| Phobius | 845 | 868 | 24 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of Lj6g3v0521560.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj6g3v0521560.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.