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IPR034392

Source: InterPro

Description

IPR034392 is a TatSF1-like, RNA recognition motif 1.

<p>This entry represents the RNA recognition motif 1 (RRM1) of Tat-SF1, which interacts with components of both the transcription and splicing machineries [[cite:PUB00083460]]. It has been shown to be a cofactor for human immunodeficiency virus-type 1 (HIV-1) Tat, which stimulates transcription elongation of HIV-1 through a series of events termed Tat transactivation [[cite:PUB00083461], [cite:PUB00083462]]. It contains two RNA recognition motifs (RRMs) and a highly acidic carboxyl-terminal half.</p>

This description is obtained from EB-eye REST.

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0000398
Biological process MRNA splicing, via spliceosome The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced.
Subterm of

Associated Lotus transcripts 1

Transcript Name Description Predicted domains Domain count
LotjaGi5g1v0202800.1
– RNA binding protein, putative; TAIR: AT5G16260.1 RNA binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|Q5RB63|HTSF1_PONAB HIV Tat-specific factor 1 homolog; TrEMBL-Plants: tr|A0A0B2Q0D8|A0A0B2Q0D8_GLYSO HIV Tat-specific factor 1 like; Found in the gene: LotjaGi5g1v0202800
Domains
19

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
mobidb-lite MobiDBLite 1 100.00