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IPR035009 is a SR140, RNA recognition motif.
<p>This entry represents the RNA recognition motif (RRM) of SR140 (also known as U2SURP) which is a putative splicing factor mainly found in higher eukaryotes. Although it was initially identified as one of the 17S U2 snRNP-associated proteins, the molecular and physiological function of SR140 remains unclear [[cite:PUB00013034]]. SR140 contains an N-terminal RNA recognition motif (RRM), a SWAP/SURP domain that is found in a number of pre-mRNA splicing factors in the middle region, and a C-terminal arginine/serine-rich domain (RS domain).</p> <p>Proteins containing this domain also include Arabidopsis RRC1, which is a splicing factor which is required for phytochrome B (phyB) signal transduction [[cite:PUB00084831]].</p>
This description is obtained from EB-eye REST.
| Transcript | Name | Description | Predicted domains | Domain count |
|---|---|---|---|---|
| – | U2 snRNP-associated SURP motif-containing protein; TAIR: AT5G25060.1 RNA recognition motif (RRM)-containing protein; Swiss-Prot: sp|Q9C5J3|RRC1_ARATH Protein RRC1; TrEMBL-Plants: tr|A0A0S3R3V4|A0A0S3R3V4_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0148600 | 31 | ||
| – | U2 snRNP-associated SURP motif-containing protein; TAIR: AT5G25060.1 RNA recognition motif (RRM)-containing protein; Swiss-Prot: sp|Q9C5J3|RRC1_ARATH Protein RRC1; TrEMBL-Plants: tr|A0A0S3R3V4|A0A0S3R3V4_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0148600 | 31 | ||
| – | U2 snRNP-associated SURP motif-containing protein; TAIR: AT5G25060.1 RNA recognition motif (RRM)-containing protein; Swiss-Prot: sp|Q9C5J3|RRC1_ARATH Protein RRC1; TrEMBL-Plants: tr|A0A0S3R3V4|A0A0S3R3V4_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0148600 | 31 | ||
| – | U2 snRNP-associated SURP motif-containing protein; TAIR: AT5G25060.1 RNA recognition motif (RRM)-containing protein; Swiss-Prot: sp|Q9C5J3|RRC1_ARATH Protein RRC1; TrEMBL-Plants: tr|A0A0S3R3V4|A0A0S3R3V4_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0148600 | 31 |
A list of co-occurring predicted domains within the L. japonicus gene space:
| Predicted domain | Source | Observations | Saturation (%) |
|---|---|---|---|
| mobidb-lite | MobiDBLite | 1 | 25.00 |