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IPR036921 is a PurM-like, N-terminal domain superfamily.
<p>This entry represents a structural domain superfamily with a core structure consisting of β-α-β-α-β(2), which is found in two enzymes of the purine biosynthetic pathway: at the N-terminal of phosphoribosylformylglycinamidine cyclo-ligase (also known as aminoimidazole ribonucleotide (AIR) synthetase, PurM) [[cite:PUB00014643]], as well as the N1 and N2 domains of phosphoribosylformylglycinamidine synthase subunit PurL (also known as formylglycinamide ribonucleotide (FGAR) amidotransferase) (PurM-like module) [[cite:PUB00016818]]. PurM and PurL utilise ATP to activate the oxygen of an amide within their substrate toward nucleophilic attack by a nitrogen. PurM uses the product of PurL, formylglycinamidine ribonucleotide (FGAM) and ATP to make AIR, ADP and P(i). It is also found as domains 1 and 3 in phosphoribosylformylglycinamidine synthase II (smPurL) ([ec:6.3.5.3]) (carries a duplication: tandem repeats of two PurM-like units arranged like the PurM subunits in the dimer) [[cite:PUB00037958]].</p> <p>This domain is also found at the N-terminal of thiamine monophosphate kinase ([ec:2.7.4.16]) (ThiL) [[cite:PUB00016093]]. ThiL phosphorylates thiamin monophosphate to form thiamin pyrophosphate, an essential cofactor that is synthesised de novo by Salmonella typhimurium.</p>
This description is obtained from EB-eye REST.
Transcript | Name | Description | Predicted domains | Domain count |
---|---|---|---|---|
– | Phosphoribosylformylglycinamidine synthase; TAIR: AT1G74260.1 purine biosynthesis 4; Swiss-Prot: sp|Q9M8D3|PUR4_ARATH Probable phosphoribosylformylglycinamidine synthase, chloroplastic/mitochondrial; TrEMBL-Plants: tr|A0A072U5E4|A0A072U5E4_MEDTR Phosphoribosylformylglycinamidine synthase; Found in the gene: LotjaGi2g1v0405000 | 27 | ||
– | Phosphoribosylformylglycinamidine cyclo-ligase; TAIR: AT3G55010.1 phosphoribosylformylglycinamidine cyclo-ligase, chloroplast / phosphoribosyl-aminoimidazole synthetase / AIR synthase (PUR5); Swiss-Prot: sp|P52424|PUR5_VIGUN Phosphoribosylformylglycinamidine cyclo-ligase, chloroplastic/mitochondrial; TrEMBL-Plants: tr|A0A0L9TJC7|A0A0L9TJC7_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0410200 | 16 | ||
– | Phosphoribosylformylglycinamidine cyclo-ligase; TAIR: AT3G55010.1 phosphoribosylformylglycinamidine cyclo-ligase, chloroplast / phosphoribosyl-aminoimidazole synthetase / AIR synthase (PUR5); Swiss-Prot: sp|P52424|PUR5_VIGUN Phosphoribosylformylglycinamidine cyclo-ligase, chloroplastic/mitochondrial; TrEMBL-Plants: tr|A0A0L9TJC7|A0A0L9TJC7_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0315300 | 15 | ||
– | Phosphoribosylformylglycinamidine synthase; TAIR: AT1G74260.1 purine biosynthesis 4; Swiss-Prot: sp|Q9M8D3|PUR4_ARATH Probable phosphoribosylformylglycinamidine synthase, chloroplastic/mitochondrial; TrEMBL-Plants: tr|A0A072TUU6|A0A072TUU6_MEDTR Phosphoribosylformylglycinamidine synthase; Found in the gene: LotjaGi6g1v0063600 | 31 | ||
– | Phosphoribosylformylglycinamidine synthase; TAIR: AT1G74260.1 purine biosynthesis 4; Swiss-Prot: sp|Q9M8D3|PUR4_ARATH Probable phosphoribosylformylglycinamidine synthase, chloroplastic/mitochondrial; TrEMBL-Plants: tr|A0A072TUU6|A0A072TUU6_MEDTR Phosphoribosylformylglycinamidine synthase; Found in the gene: LotjaGi6g1v0063600 | 31 | ||
– | Phosphoribosylformylglycinamidine synthase; TAIR: AT1G74260.1 purine biosynthesis 4; Swiss-Prot: sp|Q9M8D3|PUR4_ARATH Probable phosphoribosylformylglycinamidine synthase, chloroplastic/mitochondrial; TrEMBL-Plants: tr|A0A072U5E4|A0A072U5E4_MEDTR Phosphoribosylformylglycinamidine synthase; Found in the gene: LotjaGi6g1v0063600 | 31 |
A list of co-occurring predicted domains within the L. japonicus gene space:
Predicted domain | Source | Observations | Saturation (%) |
---|---|---|---|
cd02204 | CDD | 1 | 16.67 |