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IPR029062 is a Class I glutamine amidotransferase-like.
<p>This superfamily represents the class I glutamine amidotransferase-like domain.</p> <p>Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group [[cite:PUB00000003]]. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [[cite:PUB00002062], [cite:PUB00002406]]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). In class I glutamine amidotransferases, a triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [[cite:PUB00003933], [cite:PUB00043761]]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.</p> <p>This entry also include the DJ-1/PfpI protein that contains a catalytic triad or dyad different from the class I GAT triad.</p>
This description is obtained from EB-eye REST.
Transcript | Name | Description | Predicted domains | Domain count |
---|---|---|---|---|
– | PREDICTED: pyridoxal biosynthesis protein PDX2-like [Cicer arietinum] gi|502147413|ref|XP_004506773.1| | 14 | ||
– | PREDICTED: pyridoxal biosynthesis protein PDX2-like [Cicer arietinum] gi|502147413|ref|XP_004506773.1| | 9 | ||
– | PREDICTED: imidazole glycerol phosphate synthase hisHF, chloroplastic-like [Glycine max] gi|356567431|ref|XP_003551923.1| | 23 | ||
– | PREDICTED: imidazole glycerol phosphate synthase hisHF, chloroplastic-like [Glycine max] gi|356567431|ref|XP_003551923.1| | 23 | ||
– | PREDICTED: protein NtpR-like isoform X1 [Cicer arietinum] gi|502106503|ref|XP_004492963.1| | 9 | ||
– | Anthranilate synthase beta subunit 1 [Theobroma cacao] gi|508709407|gb|EOY01304.1| | 7 | ||
– | PREDICTED: gamma-glutamyl hydrolase-like [Glycine max] gi|356549636|ref|XP_003543198.1| | 6 | ||
– | PREDICTED: probable phosphoribosylformylglycinamidine synthase, chloroplastic/mitochondrial-like [Cicer arietinum] gi|502138893|ref|XP_004503568.1| | 12 | ||
– | PREDICTED: CTP synthase 1-like [Cicer arietinum] gi|502154191|ref|XP_004509615.1| | 21 | ||
– | PREDICTED: CTP synthase-like isoform X1 [Cicer arietinum] gi|502182968|ref|XP_004517030.1| | 26 | ||
– | PREDICTED: gamma-glutamyl hydrolase-like [Glycine max] gi|356549636|ref|XP_003543198.1| | 15 | ||
– | Carbamoyl-phosphate synthase small chain [Medicago truncatula] gi|357477161|ref|XP_003608866.1| | 12 | ||
– | Carbamoyl-phosphate synthase small chain [Medicago truncatula] gi|357477159|ref|XP_003608865.1| | 19 | ||
– | PREDICTED: anthranilate synthase component II-like [Cicer arietinum] gi|502164732|ref|XP_004513238.1| | 15 | ||
– | PREDICTED: anthranilate synthase component II-like isoform X1 [Cicer arietinum] gi|502168341|ref|XP_004514366.1| | 14 | ||
– | PREDICTED: probable phosphoribosylformylglycinamidine synthase, chloroplastic/mitochondrial-like [Cicer arietinum] gi|502138893|ref|XP_004503568.1| | 6 | ||
– | Class I glutamine amidotransferase-like superfamily protein [Theobroma cacao] gi|508711166|gb|EOY03063.1| | 11 | ||
– | PREDICTED: CTP synthase-like isoform 1 [Glycine max] gi|356525714|ref|XP_003531468.1| | 25 | ||
– | PREDICTED: protein DJ-1 homolog B-like [Cicer arietinum] gi|502089868|ref|XP_004489045.1| | 8 | ||
– | PREDICTED: protein DJ-1 homolog B-like [Cicer arietinum] gi|502089868|ref|XP_004489045.1| | 11 | ||
– | PREDICTED: imidazole glycerol phosphate synthase hisHF, chloroplastic-like [Glycine max] gi|356567431|ref|XP_003551923.1| | 18 | ||
– | GMP synthase [Medicago truncatula] gi|357492799|ref|XP_003616688.1| | 9 | ||
– | Protein thiJ [Medicago truncatula] gi|357475343|ref|XP_003607957.1| | 17 | ||
– | Class I glutamine amidotransferase-like superfamily protein [Theobroma cacao] gi|508784268|gb|EOY31524.1| | 7 | ||
– | PREDICTED: GMP synthase [glutamine]-hydrolyzing] gi|502139270|ref|XP_004503710.1| | 26 | ||
– | PREDICTED: CTP synthase-like [Cicer arietinum] gi|502117735|ref|XP_004495920.1| | 16 | ||
– | PREDICTED: CTP synthase-like [Cicer arietinum] gi|502117735|ref|XP_004495920.1| | 16 | ||
– | PREDICTED: CTP synthase-like [Cicer arietinum] gi|502117735|ref|XP_004495920.1| | 24 | ||
– | PREDICTED: para-aminobenzoate synthase-like [Glycine max] gi|356533973|ref|XP_003535532.1| | 12 | ||
– | PREDICTED: para-aminobenzoate synthase-like [Cicer arietinum] gi|502118478|ref|XP_004496287.1| | 21 | ||
– | PREDICTED: para-aminobenzoate synthase-like [Glycine max] gi|356574601|ref|XP_003555434.1| | 7 | ||
– | Intracellular protease [Medicago truncatula] gi|357460643|ref|XP_003600603.1| | 11 | ||
– | GMP synthase [Medicago truncatula] gi|357446005|ref|XP_003593280.1| | 9 | ||
– | Phosphoribosylformylglycinamidine synthase subunit PurQ; TAIR: AT3G02720.1 Class I glutamine amidotransferase-like superfamily protein; Swiss-Prot: sp|Q9M8R4|DJ1D_ARATH Protein DJ-1 homolog D; TrEMBL-Plants: tr|A0A061EEK5|A0A061EEK5_THECC Class I glutamine amidotransferase-like superfamily protein; Found in the gene: LotjaGi1g1v0101600 | 11 | ||
– | Carbamoyl-phosphate synthase small chain; TAIR: AT3G27740.1 carbamoyl phosphate synthetase A; Swiss-Prot: sp|Q9LVW7|CARA_ARATH Carbamoyl-phosphate synthase small chain, chloroplastic; TrEMBL-Plants: tr|I3SBA2|I3SBA2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0315900 | 22 | ||
– | Gamma-glutamyl hydrolase; TAIR: AT1G78680.1 gamma-glutamyl hydrolase 2; Swiss-Prot: sp|O65355|GGH2_ARATH Gamma-glutamyl hydrolase 2; TrEMBL-Plants: tr|I3T794|I3T794_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0441900 | 15 | ||
– | GMP synthase [glutamine]-hydrolyzing]; TAIR: AT5G38200.1 Class I glutamine amidotransferase-like superfamily protein; Swiss-Prot: sp|P49865|NTPR_ENTHA Protein NtpR; TrEMBL-Plants: tr|A0A151TDA1|A0A151TDA1_CAJCA Putative glutamine amidotransferase-like protein RP404 family; Found in the gene: LotjaGi1g1v0546400 | 11 | ||
– | GMP synthase [glutamine]-hydrolyzing]; TAIR: AT5G38200.1 Class I glutamine amidotransferase-like superfamily protein; Swiss-Prot: sp|P49865|NTPR_ENTHA Protein NtpR; TrEMBL-Plants: tr|A0A151TDA1|A0A151TDA1_CAJCA Putative glutamine amidotransferase-like protein RP404 family; Found in the gene: LotjaGi2g1v0239200 | 10 | ||
– | GMP synthase [glutamine]-hydrolyzing]; TAIR: AT1G66860.1 Class I glutamine amidotransferase-like superfamily protein; Swiss-Prot: sp|P49865|NTPR_ENTHA Protein NtpR; TrEMBL-Plants: tr|A0A151TDA1|A0A151TDA1_CAJCA Putative glutamine amidotransferase-like protein RP404 family; Found in the gene: LotjaGi2g1v0239200 | 10 | ||
– | GMP synthase [glutamine]-hydrolyzing]; TAIR: AT1G25220.1 anthranilate synthase beta subunit 1; Swiss-Prot: sp|Q42565|ASB1_ARATH Anthranilate synthase beta subunit 1, chloroplastic; TrEMBL-Plants: tr|B7FJB9|B7FJB9_MEDTR Anthranilate synthase component II; Found in the gene: LotjaGi2g1v0271300 | 15 | ||
– | Phosphoribosylformylglycinamidine synthase; TAIR: AT1G74260.1 purine biosynthesis 4; Swiss-Prot: sp|Q9M8D3|PUR4_ARATH Probable phosphoribosylformylglycinamidine synthase, chloroplastic/mitochondrial; TrEMBL-Plants: tr|A0A072U5E4|A0A072U5E4_MEDTR Phosphoribosylformylglycinamidine synthase; Found in the gene: LotjaGi2g1v0405000 | 27 | ||
– | CTP synthase; TAIR: AT3G12670.1 CTP synthase family protein; Swiss-Prot: sp|P70698|PYRG1_MOUSE CTP synthase 1; TrEMBL-Plants: tr|I1KTT7|I1KTT7_SOYBN CTP synthase; Found in the gene: LotjaGi3g1v0130200 | 25 | ||
– | CTP synthase; TAIR: AT3G12670.1 CTP synthase family protein; Swiss-Prot: sp|P70698|PYRG1_MOUSE CTP synthase 1; TrEMBL-Plants: tr|I1KTT7|I1KTT7_SOYBN CTP synthase; Found in the gene: LotjaGi3g1v0130200 | 25 | ||
– | DJ-1 family protein; TAIR: AT1G53280.1 Class I glutamine amidotransferase-like superfamily protein; Swiss-Prot: sp|Q9MAH3|DJ1B_ARATH Protein DJ-1 homolog B; TrEMBL-Plants: tr|A0A072V987|A0A072V987_MEDTR Class I glutamine amidotransferase superfamily protein; Found in the gene: LotjaGi3g1v0157300 | 11 | ||
– | Pyridoxal 5'-phosphate synthase subunit PdxT; TAIR: AT5G60540.1 pyridoxine biosynthesis 2; Swiss-Prot: sp|Q8LAD0|PDX2_ARATH Probable pyridoxal 5'-phosphate synthase subunit PDX2; TrEMBL-Plants: tr|I3SUR2|I3SUR2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0210000 | 9 | ||
– | Pyridoxal 5'-phosphate synthase subunit PdxT; TAIR: AT5G60540.1 pyridoxine biosynthesis 2; Swiss-Prot: sp|Q8LAD0|PDX2_ARATH Probable pyridoxal 5'-phosphate synthase subunit PDX2; TrEMBL-Plants: tr|I3SUR2|I3SUR2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0210000 | 9 | ||
– | Pyridoxal 5'-phosphate synthase subunit PdxT; TAIR: AT5G60540.1 pyridoxine biosynthesis 2; Swiss-Prot: sp|Q8LAD0|PDX2_ARATH Probable pyridoxal 5'-phosphate synthase subunit PDX2; TrEMBL-Plants: tr|I3SUR2|I3SUR2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0210000 | 14 | ||
– | Pyridoxal 5'-phosphate synthase subunit PdxT; TAIR: AT5G60540.1 pyridoxine biosynthesis 2; Swiss-Prot: sp|Q8LAD0|PDX2_ARATH Probable pyridoxal 5'-phosphate synthase subunit PDX2; TrEMBL-Plants: tr|I3SUR2|I3SUR2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0210000 | 14 | ||
– | Gamma-glutamyl hydrolase; TAIR: AT1G78680.1 gamma-glutamyl hydrolase 2; Swiss-Prot: sp|O65355|GGH2_ARATH Gamma-glutamyl hydrolase 2; TrEMBL-Plants: tr|I3T794|I3T794_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0262100 | 15 | ||
– | CTP synthase; TAIR: AT3G12670.1 CTP synthase family protein; Swiss-Prot: sp|Q54V77|PYRG_DICDI CTP synthase; TrEMBL-Plants: tr|A0A072TPJ2|A0A072TPJ2_MEDTR CTP synthase; Found in the gene: LotjaGi3g1v0300500 | 26 | ||
– | Imidazole glycerol phosphate synthase subunit HisF; TAIR: AT4G26900.1 HIS HF; Swiss-Prot: sp|Q9SZ30|HIS4_ARATH Imidazole glycerol phosphate synthase hisHF, chloroplastic; TrEMBL-Plants: tr|I1N0Y1|I1N0Y1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0002000 | 22 | ||
– | Imidazole glycerol phosphate synthase subunit hisH; TAIR: AT4G26900.1 HIS HF; Swiss-Prot: sp|Q9SZ30|HIS4_ARATH Imidazole glycerol phosphate synthase hisHF, chloroplastic; TrEMBL-Plants: tr|A0A0L9TE25|A0A0L9TE25_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0002000 | 9 | ||
– | GMP synthase [glutamine]-hydrolyzing]; TAIR: AT2G23970.1 Class I glutamine amidotransferase-like superfamily protein; Swiss-Prot: sp|O82225|GGP5_ARATH Gamma-glutamyl peptidase 5; TrEMBL-Plants: tr|A0A0L9TAE1|A0A0L9TAE1_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0040500 | 9 | ||
– | Protein DJ-1; TAIR: AT4G34020.1 Class I glutamine amidotransferase-like superfamily protein; Swiss-Prot: sp|Q8VY09|DJ1C_ARATH Protein DJ-1 homolog C; TrEMBL-Plants: tr|I3SDB4|I3SDB4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0075100 | 17 | ||
– | CTP synthase; TAIR: AT1G30820.1 CTP synthase family protein; Swiss-Prot: sp|P70698|PYRG1_MOUSE CTP synthase 1; TrEMBL-Plants: tr|A0A0S3R418|A0A0S3R418_PHAAN CTP synthase; Found in the gene: LotjaGi4g1v0149400 | 17 | ||
– | CTP synthase; TAIR: AT1G30820.1 CTP synthase family protein; Swiss-Prot: sp|P70698|PYRG1_MOUSE CTP synthase 1; TrEMBL-Plants: tr|A0A0S3R418|A0A0S3R418_PHAAN CTP synthase; Found in the gene: LotjaGi4g1v0149400 | 25 | ||
– | Class I glutamine amidotransferase; TAIR: AT2G23970.1 Class I glutamine amidotransferase-like superfamily protein; Swiss-Prot: sp|O82225|GGP5_ARATH Gamma-glutamyl peptidase 5; TrEMBL-Plants: tr|A5BCK9|A5BCK9_VITVI Putative uncharacterized protein; Found in the gene: LotjaGi4g1v0291400 | 7 | ||
– | GMP synthase [glutamine]-hydrolyzing] protein; TAIR: AT1G63660.1 GMP synthase (glutamine-hydrolyzing), putative / glutamine amidotransferase; Swiss-Prot: sp|Q89N53|GUAA_BRADU GMP synthase [glutamine]-hydrolyzing]; TrEMBL-Plants: tr|A0A0L9VPW7|A0A0L9VPW7_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0426900 | 26 | ||
– | CTP synthase; TAIR: AT4G02120.1 CTP synthase family protein; Swiss-Prot: sp|Q54V77|PYRG_DICDI CTP synthase; TrEMBL-Plants: tr|I1JBI0|I1JBI0_SOYBN CTP synthase; Found in the gene: LotjaGi5g1v0247000 | 24 | ||
– | CTP synthase; TAIR: AT4G02120.1 CTP synthase family protein; Swiss-Prot: sp|Q54V77|PYRG_DICDI CTP synthase; TrEMBL-Plants: tr|I1JBI0|I1JBI0_SOYBN CTP synthase; Found in the gene: LotjaGi5g1v0247000 | 24 | ||
– | CTP synthase; TAIR: AT4G02120.3 CTP synthase family protein; Swiss-Prot: sp|Q54V77|PYRG_DICDI CTP synthase; TrEMBL-Plants: tr|A0A151U4J8|A0A151U4J8_CAJCA CTP synthase; Found in the gene: LotjaGi5g1v0247000 | 23 | ||
– | CTP synthase; TAIR: AT4G02120.1 CTP synthase family protein; Swiss-Prot: sp|Q54V77|PYRG_DICDI CTP synthase; TrEMBL-Plants: tr|I1JBI0|I1JBI0_SOYBN CTP synthase; Found in the gene: LotjaGi5g1v0247000 | 23 | ||
– | CTP synthase; TAIR: AT4G02120.1 CTP synthase family protein; Swiss-Prot: sp|Q54V77|PYRG_DICDI CTP synthase; TrEMBL-Plants: tr|I1JBI0|I1JBI0_SOYBN CTP synthase; Found in the gene: LotjaGi5g1v0247000 | 23 | ||
– | Aminodeoxychorismate synthase; TAIR: AT2G28880.1 para-aminobenzoate (PABA) synthase family protein; Swiss-Prot: sp|Q6TAS3|ADCS_SOLLC Aminodeoxychorismate synthase, chloroplastic; TrEMBL-Plants: tr|K7LKM5|K7LKM5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0275400 | 20 | ||
– | Aminodeoxychorismate synthase; TAIR: AT2G28880.1 para-aminobenzoate (PABA) synthase family protein; Swiss-Prot: sp|Q6TAS3|ADCS_SOLLC Aminodeoxychorismate synthase, chloroplastic; TrEMBL-Plants: tr|K7LKM5|K7LKM5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0275400 | 20 | ||
– | GMP synthase [glutamine]-hydrolyzing]; TAIR: AT5G38200.1 Class I glutamine amidotransferase-like superfamily protein; Swiss-Prot: sp|P49865|NTPR_ENTHA Protein NtpR; TrEMBL-Plants: tr|G7IC70|G7IC70_MEDTR Class I glutamine amidotransferase; Found in the gene: LotjaGi5g1v0336800 | 10 | ||
– | Phosphoribosylformylglycinamidine synthase subunit PurQ; TAIR: AT3G02720.1 Class I glutamine amidotransferase-like superfamily protein; Swiss-Prot: sp|Q9M8R4|DJ1D_ARATH Protein DJ-1 homolog D; TrEMBL-Plants: tr|G7J7W0|G7J7W0_MEDTR Class I glutamine amidotransferase superfamily protein; Found in the gene: LotjaGi6g1v0049800 | 11 | ||
– | Phosphoribosylformylglycinamidine synthase subunit PurQ; TAIR: AT3G02720.1 Class I glutamine amidotransferase-like superfamily protein; Swiss-Prot: sp|Q9M8R4|DJ1D_ARATH Protein DJ-1 homolog D; TrEMBL-Plants: tr|G7J7W0|G7J7W0_MEDTR Class I glutamine amidotransferase superfamily protein; Found in the gene: LotjaGi6g1v0049800 | 11 | ||
– | Phosphoribosylformylglycinamidine synthase; TAIR: AT1G74260.1 purine biosynthesis 4; Swiss-Prot: sp|Q9M8D3|PUR4_ARATH Probable phosphoribosylformylglycinamidine synthase, chloroplastic/mitochondrial; TrEMBL-Plants: tr|A0A072TUU6|A0A072TUU6_MEDTR Phosphoribosylformylglycinamidine synthase; Found in the gene: LotjaGi6g1v0063600 | 31 | ||
– | Phosphoribosylformylglycinamidine synthase; TAIR: AT1G74260.1 purine biosynthesis 4; Swiss-Prot: sp|Q9M8D3|PUR4_ARATH Probable phosphoribosylformylglycinamidine synthase, chloroplastic/mitochondrial; TrEMBL-Plants: tr|A0A072TUU6|A0A072TUU6_MEDTR Phosphoribosylformylglycinamidine synthase; Found in the gene: LotjaGi6g1v0063600 | 31 | ||
– | Phosphoribosylformylglycinamidine synthase; TAIR: AT1G74260.1 purine biosynthesis 4; Swiss-Prot: sp|Q9M8D3|PUR4_ARATH Probable phosphoribosylformylglycinamidine synthase, chloroplastic/mitochondrial; TrEMBL-Plants: tr|A0A072U5E4|A0A072U5E4_MEDTR Phosphoribosylformylglycinamidine synthase; Found in the gene: LotjaGi6g1v0063600 | 31 | ||
– | GMP synthase [glutamine]-hydrolyzing]; TAIR: AT2G23970.1 Class I glutamine amidotransferase-like superfamily protein; Swiss-Prot: sp|O82225|GGP5_ARATH Gamma-glutamyl peptidase 5; TrEMBL-Plants: tr|A2Q1P2|A2Q1P2_MEDTR Class I glutamine amidotransferase; Found in the gene: LotjaGi6g1v0348700 | 9 |
A list of co-occurring predicted domains within the L. japonicus gene space:
Predicted domain | Source | Observations | Saturation (%) |
---|---|---|---|
cd01741 | CDD | 1 | 1.39 |