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IPR039690 is a U11/U12 small nuclear ribonucleoprotein 25kDa protein.
<p>U11 and U12 small nuclear ribonucleoprotein (snRNPs) bind U12-type pre-mRNAs as a preformed di-snRNP complex, simultaneously recognizing the 5' splice site and branchpoint sequence. SNRNP25 is a component of the U11/U12 snRNP complex [[cite:PUB00082764], [cite:PUB00089982]]. Homologues are known from animals, plants and fungi.</p>
This description is obtained from EB-eye REST.
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | MRNA splicing, via spliceosome | The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced. | ||
| Cellular component | U12-type spliceosomal complex | Any spliceosomal complex that forms during the splicing of a messenger RNA primary transcript to excise an intron; the series of U12-type spliceosomal complexes is involved in the splicing of the majority of introns that contain atypical AT-AC terminal dinucleotides, as well as other non-canonical introns. The entire splice site signal, not just the terminal dinucleotides, is involved in determining which spliceosome utilizes the site. |
| Transcript | Name | Description | Predicted domains | Domain count |
|---|---|---|---|---|
| – | U11/U12 small nuclear ribonucleoprotein 25 kDa protein; TAIR: AT4G32270.1 Ubiquitin-like superfamily protein; Swiss-Prot: sp|Q84WS8|U1125_ARATH U11/U12 small nuclear ribonucleoprotein 25 kDa protein; TrEMBL-Plants: tr|K7KTH6|K7KTH6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0382600 | 9 | ||
| – | U11/U12 small nuclear ribonucleoprotein 25 kDa-like protein; TAIR: AT3G07860.1 Ubiquitin-like superfamily protein; Swiss-Prot: sp|Q84WS8|U1125_ARATH U11/U12 small nuclear ribonucleoprotein 25 kDa protein; TrEMBL-Plants: tr|I3SEG9|I3SEG9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0526300 | 11 | ||
| – | U11/U12 small nuclear ribonucleoprotein 25 kDa protein; TAIR: AT4G32270.1 Ubiquitin-like superfamily protein; Swiss-Prot: sp|Q84WS8|U1125_ARATH U11/U12 small nuclear ribonucleoprotein 25 kDa protein; TrEMBL-Plants: tr|I3T5J9|I3T5J9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0059700 | 12 | ||
| – | U11/U12 small nuclear ribonucleoprotein 25 kDa protein; TAIR: AT4G32270.1 Ubiquitin-like superfamily protein; Swiss-Prot: sp|Q84WS8|U1125_ARATH U11/U12 small nuclear ribonucleoprotein 25 kDa protein; TrEMBL-Plants: tr|I3T5J9|I3T5J9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0059700 | 12 |
A list of co-occurring predicted domains within the L. japonicus gene space:
| Predicted domain | Source | Observations | Saturation (%) |
|---|---|---|---|
| mobidb-lite | MobiDBLite | 1 | 25.00 |