Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

GO:0005681

View this GO term in other databases

Overview

Field Value
Namespace Cellular component
Short description Spliceosomal complex
Full defintion Any of a series of ribonucleoprotein complexes that contain snRNA(s) and small nuclear ribonucleoproteins (snRNPs), and are formed sequentially during the spliceosomal splicing of one or more substrate RNAs, and which also contain the RNA substrate(s) from the initial target RNAs of splicing, the splicing intermediate RNA(s), to the final RNA products. During cis-splicing, the initial target RNA is a single, contiguous RNA transcript, whether mRNA, snoRNA, etc., and the released products are a spliced RNA and an excised intron, generally as a lariat structure. During trans-splicing, there are two initial substrate RNAs, the spliced leader RNA and a pre-mRNA.
Subterm of

Relationships

The relationship of GO:0005681 with other GO terms.

Relationship type GO terms
Is a
Regulates n.a.
Part of n.a.
Positively regulates n.a.
Negatively regulates n.a.

Ancestor tree

A force layout showing the ancestor tree for GO:0005681, and its immediate children. If you wish to explore the tree dynamically, please use the GO Explorer.

  • Drag and drop nodes to manually position (i.e. fix) them
  • Double click on a node to unfix the node
  • Press Alt and double click to visit the page containing further details of a GO term
  • Right clicking on a node will reveal a context menu

Controls

Force layout

Every force layout is different—we have picked a set of parameters which suits most GO ancestor tree chart well. If you mess something up—don't worry: hitting the "reset view" button above will reset the chart to its default layout.

Additional data

This table contains additional metadata associated with the GO entry's definition field.

Field Value
GOCmah
ISBN

· ISBN: 0198547684

, · pages

PMID
The spliceosome: design principles of a dynamic RNP machine.Wahl MC, Will CL, Lührmann R
Cell. 2009 Feb 20; 136 (4): 701–18.PMID: 19239890

Ribonucleoproteins (RNPs) mediate key cellular functions such as gene expression and its regulation. Whereas most RNP enzymes are stable in composition and harbor preformed active sites, the spliceosome, which removes noncoding introns from precursor messenger RNAs (pre-mRNAs), follows fundamentally different strategies. In order to provide both accuracy to the recognition of reactive splice sites in the pre-mRNA and flexibility to the choice of splice sites during alternative splicing, the spliceosome exhibits exceptional compositional and structural dynamics that are exploited during substrate-dependent complex assembly, catalytic activation, and active site remodeling.

Associated Lotus transcripts 56

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Transcript Name Description GO terms GO count
Lj0g3v0037709.1
– PREDICTED: intron-binding protein aquarius-like [Glycine max] gi|356574068|ref|XP_003555174.1|
GO terms
2
Lj0g3v0255039.1
– Unknown protein [Arabidopsis thaliana] gi|15451186|gb|AAK96864.1|
GO terms
2
Lj0g3v0265099.1
– PREDICTED: LOW QUALITY PROTEIN: protein snwA-like [Glycine max] gi|356558906|ref|XP_003547743.1|
GO terms
2
Lj0g3v0273799.1
– CWC15-like protein [Medicago truncatula] gi|357476859|ref|XP_003608715.1|
GO terms
2
Lj1g3v0969930.1
– PREDICTED: splicing factor 3A subunit 3-like [Cicer arietinum] gi|502136296|ref|XP_004502635.1|
GO terms
3
Lj1g3v0969930.2
– PREDICTED: splicing factor 3A subunit 3-like [Fragaria vesca subsp]. vesca] gi|470142668|ref|XP_004307025.1|
GO terms
3
Lj3g3v0044310.1
– Pre-mRNA-processing-splicing factor [Medicago truncatula] gi|357455267|ref|XP_003597914.1|
GO terms
2
Lj3g3v0044310.2
– Pre-mRNA-processing-splicing factor [Medicago truncatula] gi|357455267|ref|XP_003597914.1|
GO terms
2
Lj3g3v0044310.3
– PREDICTED: pre-mRNA-processing-splicing factor 8-like [Cicer arietinum] gi|502080722|ref|XP_004486659.1|
GO terms
2
Lj3g3v3525970.1
– PREDICTED: SNW domain-containing protein 1-like [Cucumis sativus] gi|449443171|ref|XP_004139354.1|
GO terms
2
Lj3g3v3689890.1
– SNW domain-containing protein [Medicago truncatula] gi|357448543|ref|XP_003594547.1|
GO terms
2
Lj3g3v3689900.1
– SNW domain-containing protein [Medicago truncatula] gi|357448543|ref|XP_003594547.1|
GO terms
2
Lj4g3v1248000.1
– PREDICTED: small nuclear ribonucleoprotein E-like [Glycine max] gi|356508935|ref|XP_003523208.1|
GO terms
2
Lj4g3v1259280.1
– PREDICTED: protein CWC15 homolog [Glycine max] gi|356563326|ref|XP_003549915.1|
GO terms
2
Lj4g3v1259280.2
– PREDICTED: protein CWC15 homolog [Glycine max] gi|356563326|ref|XP_003549915.1|
GO terms
2
Lj4g3v1345750.1
– PREDICTED: gem-associated protein 2-like [Glycine max] gi|356536560|ref|XP_003536805.1|
GO terms
3
Lj4g3v1345770.1
– PREDICTED: gem-associated protein 2-like [Cicer arietinum] gi|502121888|ref|XP_004497479.1|
GO terms
3
Lj4g3v2731560.1
– PREDICTED: pre-mRNA-splicing factor 18-like [Glycine max] gi|356504933|ref|XP_003521247.1|
GO terms
2
Lj5g3v0626530.1
– PREDICTED: small nuclear ribonucleoprotein E-like [Glycine max] gi|356508935|ref|XP_003523208.1|
GO terms
2
Lj5g3v2298200.1
– PREDICTED: gem-associated protein 2-like [Cicer arietinum] gi|502121888|ref|XP_004497479.1|
GO terms
3
LotjaGi1g1v0275500.1
– Protein CWC15 like; TAIR: AT3G13200.1 Cwf15 / Cwc15 cell cycle control family protein; Swiss-Prot: sp|Q6NUB2|CW15A_XENLA Protein CWC15 homolog A; TrEMBL-Plants: tr|I3SEE4|I3SEE4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0275500
GO terms
2
LotjaGi1g1v0275500.2
– Protein CWC15 like; TAIR: AT3G13200.1 Cwf15 / Cwc15 cell cycle control family protein; Swiss-Prot: sp|Q6NUB2|CW15A_XENLA Protein CWC15 homolog A; TrEMBL-Plants: tr|I3SEE4|I3SEE4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0275500
GO terms
2
LotjaGi1g1v0283800.1
– Splicing factor 3A subunit 3; TAIR: AT5G06160.1 splicing factor-like protein; Swiss-Prot: sp|Q9FG01|ATO_ARATH Splicing factor SF3a60 homolog; TrEMBL-Plants: tr|A0A151TS58|A0A151TS58_CAJCA Splicing factor 3A subunit 3; Found in the gene: LotjaGi1g1v0283800
GO terms
3
LotjaGi1g1v0497500_LC.1
– Pre-mRNA-splicing factor 18; TAIR: AT1G54590.1 pre-mRNA-splicing factor-like protein; Swiss-Prot: sp|Q2HJ41|PRP18_BOVIN Pre-mRNA-splicing factor 18; TrEMBL-Plants: tr|I1N9I5|I1N9I5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0497500_LC
GO terms
2
LotjaGi1g1v0747900.1
– Zinc finger matrin-type 2; TAIR: AT3G05760.1 C2H2 and C2HC zinc fingers superfamily protein; Swiss-Prot: sp|Q96NC0|ZMAT2_HUMAN Zinc finger matrin-type protein 2; TrEMBL-Plants: tr|I3SLF9|I3SLF9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0747900
GO terms
2
LotjaGi1g1v0794800.1
– Arginine/serine-rich splicing factor, putative; TAIR: AT3G61860.1 RNA-binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|P92964|SRS31_ARATH Serine/arginine-rich splicing factor RS31; TrEMBL-Plants: tr|A0A151TY13|A0A151TY13_CAJCA Arginine/serine-rich-splicing factor RSP31; Found in the gene: LotjaGi1g1v0794800
GO terms
2
LotjaGi1g1v0794800.2
– Arginine/serine-rich splicing factor, putative; TAIR: AT3G61860.1 RNA-binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|P92964|SRS31_ARATH Serine/arginine-rich splicing factor RS31; TrEMBL-Plants: tr|A0A151TY13|A0A151TY13_CAJCA Arginine/serine-rich-splicing factor RSP31; Found in the gene: LotjaGi1g1v0794800
GO terms
2
LotjaGi2g1v0024500.1
– Embryo defective 2765; TAIR: AT2G38770.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|O60306|AQR_HUMAN Intron-binding protein aquarius; TrEMBL-Plants: tr|I1NCV6|I1NCV6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0024500
GO terms
2
LotjaGi2g1v0024500.2
– Embryo defective 2765; TAIR: AT2G38770.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|O60306|AQR_HUMAN Intron-binding protein aquarius; TrEMBL-Plants: tr|I1NCV6|I1NCV6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0024500
GO terms
2
LotjaGi3g1v0008200.1
– Pre-mRNA-processing-splicing factor 8; TAIR: AT1G80070.1 Pre-mRNA-processing-splicing factor; Swiss-Prot: sp|Q9SSD2|PRP8A_ARATH Pre-mRNA-processing-splicing factor 8A; TrEMBL-Plants: tr|V7BXW4|V7BXW4_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0008200
GO terms
2
LotjaGi3g1v0008200.2
– Pre-mRNA-processing-splicing factor 8; TAIR: AT1G80070.1 Pre-mRNA-processing-splicing factor; Swiss-Prot: sp|Q9SSD2|PRP8A_ARATH Pre-mRNA-processing-splicing factor 8A; TrEMBL-Plants: tr|V7BXW4|V7BXW4_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0008200
GO terms
2
LotjaGi3g1v0008200.3
– Pre-mRNA-processing-splicing factor 8; TAIR: AT1G80070.1 Pre-mRNA-processing-splicing factor; Swiss-Prot: sp|Q9SSD2|PRP8A_ARATH Pre-mRNA-processing-splicing factor 8A; TrEMBL-Plants: tr|V7BXW4|V7BXW4_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0008200
GO terms
2
LotjaGi3g1v0008200.4
– Pre-mRNA-processing-splicing factor 8; TAIR: AT1G80070.1 Pre-mRNA-processing-splicing factor; Swiss-Prot: sp|Q9SSD2|PRP8A_ARATH Pre-mRNA-processing-splicing factor 8A; TrEMBL-Plants: tr|V7BXW4|V7BXW4_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0008200
GO terms
2
LotjaGi3g1v0008200.5
– Pre-mRNA-processing-splicing factor 8; TAIR: AT1G80070.1 Pre-mRNA-processing-splicing factor; Swiss-Prot: sp|Q9SSD2|PRP8A_ARATH Pre-mRNA-processing-splicing factor 8A; TrEMBL-Plants: tr|A0A151SPN6|A0A151SPN6_CAJCA Pre-mRNA-processing-splicing factor 8; Found in the gene: LotjaGi3g1v0008200
GO terms
2
LotjaGi3g1v0399000.1
– Arginine/serine-rich splicing factor, putative; TAIR: AT3G61860.1 RNA-binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|P92964|SRS31_ARATH Serine/arginine-rich splicing factor RS31; TrEMBL-Plants: tr|I1KHT0|I1KHT0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0399000
GO terms
2
LotjaGi3g1v0399000.2
– Arginine/serine-rich splicing factor, putative; TAIR: AT3G61860.1 RNA-binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|P92964|SRS31_ARATH Serine/arginine-rich splicing factor RS31; TrEMBL-Plants: tr|I1KHT0|I1KHT0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0399000
GO terms
2
LotjaGi3g1v0399000.3
– Arginine/serine-rich splicing factor, putative; TAIR: AT3G61860.1 RNA-binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|P92964|SRS31_ARATH Serine/arginine-rich splicing factor RS31; TrEMBL-Plants: tr|I1KHT1|I1KHT1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0399000
GO terms
2
LotjaGi3g1v0399000.4
– Arginine/serine-rich splicing factor, putative; TAIR: AT3G61860.1 RNA-binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|P92964|SRS31_ARATH Serine/arginine-rich splicing factor RS31; TrEMBL-Plants: tr|G7LAU9|G7LAU9_MEDTR RNA-binding (RRM/RBD/RNP motif) family protein; Found in the gene: LotjaGi3g1v0399000
GO terms
2
LotjaGi3g1v0399000.5
– Arginine/serine-rich splicing factor, putative; TAIR: AT3G61860.1 RNA-binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|P92964|SRS31_ARATH Serine/arginine-rich splicing factor RS31; TrEMBL-Plants: tr|G7LAU9|G7LAU9_MEDTR RNA-binding (RRM/RBD/RNP motif) family protein; Found in the gene: LotjaGi3g1v0399000
GO terms
2
LotjaGi3g1v0399000.6
– Arginine/serine-rich splicing factor, putative; TAIR: AT3G61860.1 RNA-binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|P92964|SRS31_ARATH Serine/arginine-rich splicing factor RS31; TrEMBL-Plants: tr|I1KHT0|I1KHT0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0399000
GO terms
2
LotjaGi3g1v0399000.7
– Arginine/serine-rich splicing factor, putative; TAIR: AT3G61860.1 RNA-binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|P92964|SRS31_ARATH Serine/arginine-rich splicing factor RS31; TrEMBL-Plants: tr|A0A151SIS4|A0A151SIS4_CAJCA Arginine/serine-rich-splicing factor RSP31; Found in the gene: LotjaGi3g1v0399000
GO terms
2
LotjaGi3g1v0474900.1
– Small nuclear ribonucleoprotein Sm D3; TAIR: AT1G20580.1 Small nuclear ribonucleoprotein family protein; Swiss-Prot: sp|Q9LM92|SMD3B_ARATH Small nuclear ribonucleoprotein SmD3b; TrEMBL-Plants: tr|I3SGN2|I3SGN2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0474900
GO terms
2
LotjaGi3g1v0529900.1
– SNW domain-containing 1; TAIR: AT1G77180.1 chromatin protein family; Swiss-Prot: sp|O80653|SKIP_ARATH SNW/SKI-interacting protein; TrEMBL-Plants: tr|A0A1J7HB65|A0A1J7HB65_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0529900
GO terms
2
LotjaGi3g1v0529900.2
– SNW domain-containing 1; TAIR: AT1G77180.1 chromatin protein family; Swiss-Prot: sp|O80653|SKIP_ARATH SNW/SKI-interacting protein; TrEMBL-Plants: tr|A0A1J7HB65|A0A1J7HB65_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0529900
GO terms
2
LotjaGi3g1v0529900.3
– SNW domain-containing 1; TAIR: AT1G77180.1 chromatin protein family; Swiss-Prot: sp|O80653|SKIP_ARATH SNW/SKI-interacting protein; TrEMBL-Plants: tr|A0A1J7HB65|A0A1J7HB65_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0529900
GO terms
2
LotjaGi3g1v0549500.1
– SNW domain-containing 1; TAIR: AT1G77180.1 chromatin protein family; Swiss-Prot: sp|O80653|SKIP_ARATH SNW/SKI-interacting protein; TrEMBL-Plants: tr|A0A1J7HB65|A0A1J7HB65_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0549500
GO terms
2
LotjaGi3g1v0549500.2
– SNW domain-containing 1; TAIR: AT1G77180.1 chromatin protein family; Swiss-Prot: sp|O80653|SKIP_ARATH SNW/SKI-interacting protein; TrEMBL-Plants: tr|A0A1J7HB65|A0A1J7HB65_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0549500
GO terms
2
LotjaGi3g1v0549500.3
– SNW domain-containing 1; TAIR: AT1G77180.1 chromatin protein family; Swiss-Prot: sp|O80653|SKIP_ARATH SNW/SKI-interacting protein; TrEMBL-Plants: tr|A0A1J7HB65|A0A1J7HB65_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0549500
GO terms
2
LotjaGi3g1v0549500.4
– SNW domain-containing 1; TAIR: AT1G77180.1 chromatin protein family; Swiss-Prot: sp|O80653|SKIP_ARATH SNW/SKI-interacting protein; TrEMBL-Plants: tr|A0A1J7HB65|A0A1J7HB65_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0549500
GO terms
2
LotjaGi4g1v0203400.1
– Protein CWC15 like; TAIR: AT3G13200.1 Cwf15 / Cwc15 cell cycle control family protein; Swiss-Prot: sp|Q6NUB2|CW15A_XENLA Protein CWC15 homolog A; TrEMBL-Plants: tr|I3SEE4|I3SEE4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0203400
GO terms
2
LotjaGi4g1v0294700.1
– Zinc finger protein 830; TAIR: AT3G02860.2 zinc ion binding protein; Swiss-Prot: sp|Q63ZM9|ZN830_XENLA Zinc finger protein 830; TrEMBL-Plants: tr|I3SVA5|I3SVA5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0294700
GO terms
3
LotjaGi4g1v0301200.1
– Small nuclear ribonucleoprotein; TAIR: AT4G30220.1 small nuclear ribonucleoprotein F; Swiss-Prot: sp|Q9SUM2|RUXF_ARATH Probable small nuclear ribonucleoprotein F; TrEMBL-Plants: tr|I3SY08|I3SY08_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0301200
GO terms
2
LotjaGi4g1v0393300.1
– Pre-mRNA-splicing factor 18; TAIR: AT1G03140.1 splicing factor Prp18 family protein; Swiss-Prot: sp|Q99633|PRP18_HUMAN Pre-mRNA-splicing factor 18; TrEMBL-Plants: tr|I1JNV3|I1JNV3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0393300
GO terms
2
LotjaGi4g1v0393500.1
– Pre-mRNA-splicing factor 18; TAIR: AT1G03140.1 splicing factor Prp18 family protein; Swiss-Prot: sp|Q8BM39|PRP18_MOUSE Pre-mRNA-splicing factor 18; TrEMBL-Plants: tr|I1JNV3|I1JNV3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0393500
GO terms
2
LotjaGi4g1v0405100.1
– Small nuclear ribonucleoprotein Sm D3; TAIR: AT1G20580.1 Small nuclear ribonucleoprotein family protein; Swiss-Prot: sp|Q9LM92|SMD3B_ARATH Small nuclear ribonucleoprotein SmD3b; TrEMBL-Plants: tr|I3T1G1|I3T1G1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0405100
GO terms
2
LotjaGi5g1v0029600.1
– Small nuclear ribonucleoprotein; TAIR: AT4G30220.1 small nuclear ribonucleoprotein F; Swiss-Prot: sp|Q9SUM2|RUXF_ARATH Probable small nuclear ribonucleoprotein F; TrEMBL-Plants: tr|I3SY08|I3SY08_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0029600
GO terms
2

Co-occuring GO terms 1

A list of co-occurring GO terms within the L. japonicus gene space:

GO term Namespace Name Observations Saturation (%)
GO:0005681
Cellular component Spliceosomal complex 1 1.79