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Field | Value |
---|---|
Gene ID | LotjaGi3g1v0464700 |
Transcript ID | LotjaGi3g1v0464700.2 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | RING-box protein; TAIR: AT5G20570.1 RING-box 1; Swiss-Prot: sp|Q940X7|RBX1A_ARATH RING-box protein 1a; TrEMBL-Plants: tr|K7M2W2|K7M2W2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0464700 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:88005733..88008641) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCGGAGACTCTTGATTCCGATGTGGCGATGGTTCCCGCCGGCGAACCTTCAAGCAGCGCCGGCCCTTCTTCCAAGAA GTCCAAACGCTTCGAGATCAAGAAGTGGAACGCCGTCGCTCTCTGGGCTTGGGGTGAGTCACGACTCACGAGTCCCTCTT CTCTCTTCTTCCCTTCCCAATCCTAAACCCTATTTTTTTGGGATTTTGTTTTTTAATTTTTTGTTTTGTGGTTCTTTGAT TGCAGACATTGTCGTTGATAACTGTGCTATCTGCCGCAACCACATCATGGATCTCTGTAATTTTCACTTTCTTCAATTCT TCTCTCTCTATTTGTTGTTTTGAGATTATTCCCCTTTTGAATCTTCATTCACTGATTTTTTTAGGTATAGAGTGCCAAGC TAACCAGGCTAGCCCAACTAGCGAAGAATGCACTGTGGCTTGGGGTATGTATCAAAACCCCCTCATATTTCTTGTTCCTT TTTTACTTTAATCAATATTTTGGTGATTTTGTGTGAATGCCTTTTAGAATATTTTGTTTTCTTGTGCCATCTCTTTTAGG GTTCAAGCTACATCAGTTTGTAGGAATATTATGAAATTTTTGATAAAACTATTGTTAAGAGTGTTTTGCTCGTTTAAGTT GCTAGGAAGTGTCTAGGTAGTTTTTCATTCATAAATTAGGTCCAAATTGTTGGTAAAAAGTGTGAAGTGGGTGTATGATG AAGATTCACCATCTCACGAAAGGGGGTCCGAGCTCCATTATTCGATAATTAAATCACCACGATAGAGTATAGACAGTCAG GCATATATACCAAGAAAGGAATGGAGAATTCTTCCGTGCAGATAAATTGAGGCTACCCTAATGAAATAGTTGGTGGGAGT ACATGGAGATGGGGACAATCTCGTTTTATGAGTTAGGGTAGTACCCCTAGGGTAACATGAAATCAATTCTGCTGCGTTGA GTTTGAGAAAGCCCACACTTATGGGGATATACTGATATATGGTTACATAGTTGTTAGAAGGATGGAGGGTAGGGAAAAAT ACTTGAGGGCCGAGACGAGCTGCCTAAAGAGCTCATTAGGCGCATTCCACTTTCCTCCAATGAGATGTCTTATGTTTCAA TGGCATTCAGAGAGTTCTACTCTCTAGCTAGAGTACAGTTTGGTTAATTAAATTAATCGTACAACATTGACTAATATTAT AATGGCACGCAATAGCCAATGTGTATAGTAAATAATGTGGCATTTGTGTTTAAACCATTGTCTGTGTTGAGATGAAGATC CCACATCGGCTAGAGATATAGTTAAAGTAGAGCGTATGAAGGTTTTGACAATTGTGACCTCACGAACTAGCGTTTGACTT TTAAGTTAGAGTTAGGTCCAGCTCTGAATTCTAAGATGTTTTGAGAGCCTATCCTAGTTTCGATATTGGGCCACCCACTG TTGTCTCAAAAAAAAATAGTGGTTTTAGCAATCCTCACCTCATAAGCTAGCTTTTAGGTAGAGTTAGGCCAGGCCTACGT TATGAGCCTGAATGCATTGATTTATAATCATGAGGAAAGGAGCTTTGCATCCACAAATTCTTCCTGGTGCTTTTTTTTTT GCTATTTAGTGCTGTGTATTGGGCTGGTGACTCAATTATCCTGATCTTTAGTTAGAAAGAAGTGTAATTCAATTTTAGGC TGGGTTGTGAGCTGCACGTAGTCGTGTATTATATTAATGTTGTTTTCCTTTCATGTTATGAAAGACATCCACTCCTCATT TAATATATTTTACCTTTTTTTCTTTCTCTGTTCAATTATGAAACTGAAGCAAATTCAGTATCTTATGGTTACTGTACCTC CATATTTCTCTATTATGGTATTTACATTTACGATGTGGTCTCTGCCTCAAATTGATGTCAGTTTTTGGGTTTTTACTTCA CGTATCCTTCTTTTTCCAACAGGCAATCCCCCCAGCCCTCTTTCTAGATCAAATTTACATAAAAATCATCCTTGCAGAAT ATACCTATTCATAACATTTTCACTGGAGAAACATACTAACATATTTTCCACCATATATGGGTTCAATTAGTTTATGATTT GAAAAGGAAATAACATTTTCATTGGGAACCATTATATCAATAATGATCCCTAAGTTCAAAAGTAAACATAACAACATGCT TTCTCTTCCTTCTCAATCGATCAATCCTGTCCAAAAGGGAGGGACCAAAAGTTTTGGGACCCAAAGATTCTTTCTCCATC CTACTATCTCCCATTCCACCCTTTCCTTAATAACCAAAGAAGGGATGATGTCTAATCAATAAGCATTTTCCTTTTCCCTC CCATGTATTAGTAGTAAAGGAAACAGGGGGTCAATTCTATGATGGACCATTCATTACTGCCCCTATTATAAGTCACTTTT GTGTTGCAAATACATTAGATCATGCTTTTTTTTTTGGTAACTGCAAACATTTTGGTATAGCTAGATCCTTATTTTGGTTC CGTTGGAATAAGATATAATGCTTACTGCTTAGTTTGTTTTCCATGAGTGAAATTATTATGCTATTTCAGTTTAGGATATA TTCTTTTGAACAATCAGGACTTCTAAGAATAGTTTGTAGGTTATTCTCTATTACGAAGGGTTCTTTAGCTAGTACTATTC GGCTTAGCATATCCAGGATTACTCAAACTTTTGCTTGCTCTGGCTTACATCTTATACAGGGGTTTGTAACCATGCTTTTC ACTTCCATTGCATTAGTCGATGGCTCAAGACCCGCCAAGTATGTCCTCTAGGTATGCATGCTCAAATCCTTTCACATTTC CTTTTGTGTTGGAGACTATAAGGAATAAGAAGCATACTTCTTACTGACCTTGTTTTTCTGTGTTGGTACAGATAACAGTG AGTGGGAGTTTCAGAAATATGGCCACTAG
CDS sequence (LotjaGi3g1v0464700.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTGGCGATGGTTCCCGCCGGCGAACCTTCAAGCAGCGCCGGCCCTTCTTCCAAGAAGTCCAAACGCTTCGAGATCAAG AAGTGGAACGCCGTCGCTCTCTGGGCTTGGGGTGAGTCACGACTCACGAGTCCCTCTTCTCTCTTCTTCCCTTCCCAATC CTAAACCCTATTTTTTTGGGATTTTGTTTTTTAATTTTTTGTTTTGTGGTTCTTTGATTGCAGACATTGTCGTTGATAAC TGTGCTATCTGCCGCAACCACATCATGGATCTCTGTATAGAGTGCCAAGCTAACCAGGCTAGCCCAACTAGCGAAGAATG CACTGTGGCTTGGGGGGTTTGTAACCATGCTTTTCACTTCCATTGCATTAGTCGATGGCTCAAGACCCGCCAAGTATGTC CTCTAGATAACAGTGAGTGGGAGTTTCAGAAATATGGCCACTAG
Protein sequence (LotjaGi3g1v0464700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MWRWFPPANLQAAPALLPRSPNASRSRSGTPSLSGLGVSHDSRVPLLSSSLPNPKPYFFGILFFNFLFCGSLIADIVVDN CAICRNHIMDLCIECQANQASPTSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Phobius | 1 | 56 | 56 | - | – | |
PANTHER | 52 | 147 | 96 | 6.9E-55 | – | |
PANTHER | 52 | 147 | 96 | 6.9E-55 | – | |
TMHMM | 56 | 78 | 23 | - | – | |
Phobius | 57 | 78 | 22 | - | – | |
Gene3D | 67 | 147 | 81 | 4.2E-26 | ||
SUPERFAMILY | 72 | 144 | 73 | 1.38E-31 | – | |
Phobius | 79 | 147 | 69 | - | – | |
CDD | 79 | 140 | 62 | 1.49732E-46 | – | |
Pfam | 79 | 137 | 59 | 8.3E-25 | ||
ProSiteProfiles | 92 | 137 | 46 | 9.48 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi3g1v0464700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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