Domain Predictions — View

Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

PIRSF000502

Source: PIRSF

Description

No description is available for this domain.

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0006595 View details of GO:0006595 AmiGO InterPro QuickGO	Biological process	Polyamine metabolic process	The chemical reactions and pathways involving polyamines, any organic compound containing two or more amino groups.	Subterm of GO:0006576

Associated Lotus transcripts 4

Transcript	Name	Description	Predicted domains	Domain count
Lj2g3v1391590.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Spermidine synthase [Lotus japonicus] gi\|126153731\|emb\|CAM35497.1\|	Domains G3DSA:2.30.140.10 G3DSA:3.40.50.150 IPR001045 IPR029063 IPR030373 IPR030374 IPR030668 MF_00198 PF01564 PIRSF000502 PS01330 PS51006 PTHR11558 PTHR11558:SF25 SSF53335 TIGR00417 cd02440 mobidb-lite	18
LotjaGi1g1v0282100.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Spermidine synthase; TAIR: AT5G53120.1 spermidine synthase 3; Swiss-Prot: sp\|Q94BN2\|SPSY_ARATH Spermine synthase; TrEMBL-Plants: tr\|A2VC29\|A2VC29_LOTJA Spermine synthase; Found in the gene: LotjaGi1g1v0282100	Domains G3DSA:2.30.140.10 G3DSA:3.40.50.150 IPR001045 IPR029063 IPR030373 IPR030374 IPR030668 IPR035246 IPR037163 MF_00198 PF01564 PF17284 PIRSF000502 PS01330 PS51006 PTHR11558 PTHR11558:SF25 SSF53335 TIGR00417 cd02440	20
LotjaGi2g1v0319700.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Spermidine synthase; TAIR: AT1G23820.1 spermidine synthase; Swiss-Prot: sp\|Q9ZTR1\|SPD1_PEA Spermidine synthase 1; TrEMBL-Plants: tr\|A2VC28\|A2VC28_LOTJA Spermidine synthase; Found in the gene: LotjaGi2g1v0319700	Domains G3DSA:2.30.140.10 G3DSA:3.40.50.150 IPR001045 IPR029063 IPR030373 IPR030374 IPR030668 IPR035246 IPR037163 MF_00198 PF01564 PF17284 PIRSF000502 PS01330 PS51006 PTHR11558 PTHR11558:SF43 SSF53335 TIGR00417 cd02440 mobidb-lite	21
LotjaGi4g1v0164700.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Spermidine synthase; TAIR: AT1G23820.1 spermidine synthase; Swiss-Prot: sp\|Q9ZTR0\|SPD2_PEA Spermidine synthase 2; TrEMBL-Plants: tr\|A0A151SJ65\|A0A151SJ65_CAJCA Spermidine synthase 2; Found in the gene: LotjaGi4g1v0164700	Domains G3DSA:2.30.140.10 G3DSA:3.40.50.150 IPR001045 IPR029063 IPR030373 IPR030374 IPR030668 IPR035246 IPR037163 MF_00198 PF01564 PF17284 PIRSF000502 PS01330 PS51006 PTHR11558 PTHR11558:SF43 SSF53335 TIGR00417 cd02440 mobidb-lite	21

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
mobidb-lite	MobiDBLite	1	25.00