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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0282100 |
| Transcript ID | LotjaGi1g1v0282100.2 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Spermidine synthase; TAIR: AT5G53120.1 spermidine synthase 3; Swiss-Prot: sp|Q94BN2|SPSY_ARATH Spermine synthase; TrEMBL-Plants: tr|A2VC29|A2VC29_LOTJA Spermine synthase; Found in the gene: LotjaGi1g1v0282100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:68774473..68780454) extracted from Lotus japonicus Gifu genome v1.2.
AAATAAAATCACATTAATTTTATTAAATCTTTTGTGATGTAGAGAATCAGGATAAAAATCTTATAAATAGAAATGCTCCG TTATCTTCGTTCCATTCCAAATCCAAAGCAAAGGTTTGTGTGTGACAGTGATAGTGAGAAGAGAGAAGGTGAATTTTGGT AACAGAGACAGTGTTTTGTGTTGCGTATCCATCTTCATCCCTTCATTCCTTCCTTCTGGTTCGATTGCGCACAGTACAAT CCTCAAAACCACTCTCTCAAACCAGGCAATCTTCTCTTCTCCCTCATCTTCCCCCAATCATCATCATCTTCACTCTCTTT TGCTATATCGTAAACCCTAGCTGCTCAAAATCGCAGTAATTTTGGTAACGCATTTTGTTTAATTTTCCTGCGTTTTCCGT TTTGCCAAACACGAAGTTCGAACTACTCTCTGTCATCATTGATCACTGTCGCTATTATTGATATGATTATATTATATGAT TATTTGATTATTTCTTGAAAACGGAAGAAAAGGCGATTTTTTTTTTGCTATAATTATATGATATGATTATATATTTTTAT GATTGATTCACATTTTATTTTCTACCCTCGCTGATTGAATGATTGATTCTGAAATTACCATTAATATTGTTAGCTGTATT ACACTGTTATAATAATATTATTCTCCTTTATTTGCTAATTTATTGTTCAGATTATACCTAATTTTGAATTGTACTCTTCT TTTTCTGTGGGTTGTTTTCTTCATCAACAATTTGTCTATTATTTTATTTAAGGGGCATGTGTTGTTTACTTTTCTTACTT TGTCAGTGAACAAAAGGTAATATTTACTTTGCCTTTAATCTTTGCTTATAAAAGAAGACACTTTAGTTTGGTATTTAAAT GTGAAGAAGATTTTTCCAGTGATATTGTGCTTCTTCTTTACTAAGTAAAGAGGATTCCTTTTTCTATGTTTGAGGTTTTG TACATTATTTTAATTTTTGTGATAGATTATATGCTTAATCTGCAGAGACTGGAGCCTGAGAAGAAAAGGATAGTTTATGG GGGACGCCGCAGGAAGAGGTTTGGAATGCCAGAAGACTATGGATGGGAAGGAGAGTAACAGGAATGGCTTAGAGAAGGAA CTTCCTTCATGTTGTTTGAAGGCTATTGCTTCAGACCCTGAGTTGGATGCAAAATGCCATTCCACCGTTGTTTCTGGGTG GTTCTCAGCACCTCAAACTTGCTCTGGTCATTATCAGCTATTTAATTTTTTGATTTCACTGTGTGGCACTACATAGAGCC AATCTCTGGAGGATAAAATATAAGTGCTGTTAATAACCCTCTTCCTTTTTACCATCTTTTTACAGGGAAATCTGGGAAAG ATGCTTATTTCAACAACCCAATGTGGCCAGGTGAGTGTATGCCGTTATACACGCCGCGTGTATTATTGCCTTGTAACATT GAAGTGCCAGCTTTCCCTTCATGTAACCTGAATTACAAACCTTGCTTTTAGAAAATGATCTTGTTCTTCTGTTGATGGCC GTGATCCGTGATTATCATAAACTTTTGAACCTTCATAGAGAAGGCTGAATGCGGAAGAAATATGAAAATCCTTGTACAAT TTGGCTAAGGAGGATGAACTCGGGGGTTTTTTTCGTTTTAAATTGTATTTTTTTTTTCACTTTTAATTAGAAAAGTGTCA CCTTTTGTAAACAATCTTCTATTATTTTCATTTATTTTGATTATTTCCAATACAGTTTTAAAAAAATCAGGGCAAAACAG CTTCGCTATAAACCAAGTCCAGGGAAGGACCGCACCAAGTTTGTGGATCTAATGTAGACACTCTTACCTTGCATTTTTGT AAGAGGCTGATTCCATGGCAGCAACCTTGGCGTTGCGAACGTTGCGCCGAGAAAACGTTACTAGATTTTAGATGTGTTGA ACCTACTTTCCTTGTTTGTGTTAAACCTTTTAGAAAAACATCCTTATTTCTATTTACTTATAACATTGGATATTTTGTTT TGTTTTCTCCGTTTTGAGCTACAAATCATGCCCAATTGCTCCCAAATATACATATTTTTAAACATTTTTAAAAGCACTCA TTCCCATTGCCGAATATGCATCTTCTTTTTTTCCTTGTTTGGATTGCTTGACTACTGCTGATGGTTTCTGTGTCTATCAT TAGGAGAAGCCCATTCAATCAAAGTAGACAAGATCTTGTACAAGGAAAAGTCAGAGTACCAAGAGGTCTTGGTTTTTGAG GTTTGGCATCATCTTCTTATAATGTTCTCTAAATTCTACTTGTAAGTGGTTAGTTATTAACACTTCTTTTTTAACAGTCA TCAATATATGGGAAAGTTCTTGTACTTGATGGGATTGTTCAGTTGACTGAGAAGGATGAATGCGCTTACCAGGAGATGAT AGCTCATCTTCCCCTTTGTTCAATTGCGTCCCCAGAAACTGTAAAGTCTTTTTTTATTTTTATATGATTGATCATTGTTT CGGGTCTCACTTATATCATATCTCTTTGTTGAACATTATATTATATAGTAGCTCCAGATTCAATTTCAAAAGTACAGTTC TTTGTTATATCGCTTAGGGAAAATGATATTGCAGAAGCTTTTTGGTATTCAGCAGTTTAGAAGTTGCTTCTTCATGTTCT ATTCTTTAATGTTTGTCAGTGCTATCATCTTGATAGACTAGTTGGTTGTGTTTCCTCTTCTCAATGCTTTCATCTGCATG GAGGGAAGCACTTGAAACATGTGAAAATTTGAATTTGAAATCCTTTTACATTTATATTGTTTTTTTTTTTTGCCTTTTCT GCTTGAATAATCTGCTAATTGATTTGTTTGTTATTGATTCAGGTTTTAGTTGTTGGTGGCGGAGATGGCGGGGTTCTAAG GGAAGTCTCCCGCCACAGCTCTGTGAAGCGTATTGATATTTGTGAGATAGATAAGATGGTTATTGATGTAAGTTGTGGGC CTTATGACATATTTTAGTATAACTGATTCCATTGATGAGATAAGCTTTTTATTTCTATTGTTACTTTGTAGGTTTCTAGG AAGTTTTTTCCAGAGTTAGCTGTTGGATTTGATGATCCTCGAGTACACCTGCATGTTGGCGATGGTTTGTTTTTATATCA TACAAGTCTCATTTTAAGTTTGTTGAGTTGCCTAGCCTGGCTTTATATTTACCAATTACAAACTAATATAAGGTTATGTG AACATCTTCACTTGATATTTTCTTCACCCACTTTTTTTGGCAGCTGTTGAATTTCTTAGATGTACTCCTGAGGGGAAGTA TGATGCTATAATTGTTGATTCCTCAGATCCTGTGGGTAAGCTATTTCAATTTAAAATAATTCACCCAATGTATTCAGTTA ATAATGTGTATTATTAGAATTAATGCTAAATCTCAAATGGAACGTAAACTGTGTTTTGAGGAGGGACTATACTTTTCTTC AGTTTAGTGGTTAACTAATAGAGCCTCAGACACAGAATAAGAAATTGCAGAGTAAGAAACAGTGATAACCGAGAGCTTTA TTGAATGATCAAAAGTGGATTACAAAAGGAATGGAGTATTTGCCCTTCAATTCCTTACTCAGAGCTAGGCTCCGTAGAGG AAGTTACAACTTCCTCATCATTCTCACTAATTACAATATCAAAAGGTCATCTCCACATTTCCTTCCTATTCCTTATATTC AGCAACTAATCTTGCCAGCTCTCCTTTGCATTTGTCCTTTTCTTTAACTAACTTGGTCAGCAATTCCCTTCTTGCCCCTT CTAGAATAAACCTGAAAGATTCTGGGTCTCTTTGTCTTAGTATGAATTAATTCCTCACCTGGCTTAGCCTTAACACCTCG GGTCCTATCATTAACTAGTTGAGGTTGGCCTGAACTCTCGTGCCTCAATGTGACATCCAAGTGTTTAGTCTTCATTTATG AGAAATTTCAGTGTTTTGTTGGCTGTACAATGATTGACTGTCTTTGTCACAATTCTGATTTGAATTCTATCTGAAAGCTT CATTGTCCTATGATTTTTTTCAGAATTTTTGTTGGTAAATCATTTACTTTGAATTATCCACTAAAATATAAATGATTAAG CTACATACTAATTTTTTATTGGTAGATTCAACAGATTATTACTCTTCCTTTTTTGGTTATTATGATCAAAAGCTTACAAG ATGACTTTTGTATTTTAGGTCCTGCCCAGGAACTTGTAGAGAAACCATTTTTTGAAACATTAGCGAAAGCATTGAGGCCT GGTGGAGTTCTCTGTAACATGGCAGAAAGTATGTGGCTTCATACACACCTTATCCAAGATATGATCTCCGTCTGTAGAGA AACATTTAAAGGTTCTGTACATTATGCATGGGCAAGTGTTCCTACATATCCGAGGTAGTTATGCATTTCTATTTGCTAGT GAATTAATATTTTGTTCTTACTTTGAAGAATAAGGGTAACTTTTTCTTAAGGTGGGGGCAATTCAGCCTCTTGAGGTACC ACTGACATGGTCCGATCCATAAAATATATAATTATAATTGGTATAATGTCGAAGAAGTTCTTAGTAAGCAAGAACCTTTC TTTTTGTCCTCATGCAAAATTTTACAATTTTATATATAAAAATCACATTCAGGTAATAAATCCCAGCTTATGTGGTTTGG GTCACATTGTTGTTGTTGTGTGTTTCAAGGTATAGAGCAGGTTTTCACTTTACCTGCTTGAGAGGATTCAATTTGTTGTT ATCCTAAACTAAAAGTTTAGGAAACTGAGATTTTGAAGTTTGATAACTAACCAATGCCTTAGACAATTGCAAAATCTAAA ATTCCAAATCAAAAGAGTGTAGTCATTTTTTTATAAACATGATTGTCATATTTTTTATTTTATTTTATAATAATGGTGAT TGTAGCGGCTCATCCCCTTCCTTTCTTGCCCTGCAGTGGTCTGATAGGGTTTCTTCTATGCTCAACGGAGGGGCCACCTG TTGATTTTGTAAACCCCATCAACCCAATTGAAAAGTTGGAAGGTGCAGATAAGCACAAAAGGAAACTTAGATTCTATAAC TCAGAGGCAAGTATATTGTCCATAGATAGTTTTCGCCTTATTGGTTTGAATGATCTATTTTCTTTTGAAACAAAATATCA GAAGAGTGAATGTCTGAAACTATAATGGGTAGCAATTGCATGTGGCTTTGTTTTTGGTGTTTTCTCATGAGTTATGCTCT TGTTTGTCAATACTCTTGTGTTGTCGACTAAATTCTAAATTCTAAGCATTGGTTATATATTGATATGCAGTTCTATTTGT ATGGGTCCTTGTAAGGTCTCGTCTCTTATGCCAGCAATATCTACTACACACACAAGATCTAACAACCTTCTTTTTTCTAC AGATGCACACAGCTGCTTTCGCGTTGCCTGCATTTCTGAAGAGGGAGGTGAGCTTGATCCGTGATCCTTCCGCTTAGTAG CAACTAATGTTTGCATGTTATAGCCCCTAAATAATCAATTTGACTTCATATTCATTTGGGGAAATCTCATGACGTGGATG AACATGTAGTCATCCGGGGAAGTAGACCAAATGTGTGAGAAATAGGAAGTTGTGGTGATTATTTGTCAGAAAATTCTATA TGTGGAACCTATTTAGCTTTGTTGAACTCTTTGGGCGATTTTGGATGGCCTTGTCTCTAATTTATTATACTATTGCTATT GCTTTTACGTCTTTGTTATCTATTTCGTTGATTTTGTGGATCGGAAGTAACCTCACTATTAACACACTCTGTCCATGTTC TGGTACGTGGTGTTAGCTTCCTTCCGTTATCAATGTCACCTTCAAAGTGTTATTTAAAAGTTGTGTTGTTTGTTTGGGGT ATTTAGTTGTGGGGCTTTTGTGATGTTAGTATTTTTGTGGTTTGCGATTCTTTTGGGCTCGAGTAACTATTTTTGAGGTT TTTATTTTATCTTATATATGTTTCTGTTGTTTGGCTGCCTAGATTTTAGTTGTTGATTTTGG
CDS sequence (LotjaGi1g1v0282100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGGACGCCGCAGGAAGAGGTTTGGAATGCCAGAAGACTATGGATGGGAAGGAGAGTAACAGGAATGGCTTAGAGAA GGAACTTCCTTCATGTTGTTTGAAGGCTATTGCTTCAGACCCTGAGTTGGATGCAAAATGCCATTCCACCGTTGTTTCTG GGTGGTTCTCAGCACCTCAAACTTGCTCTGGGAAATCTGGGAAAGATGCTTATTTCAACAACCCAATGTGGCCAGGAGAA GCCCATTCAATCAAAGTAGACAAGATCTTGTACAAGGAAAAGTCAGAGTACCAAGAGGTCTTGGTTTTTGAGTCATCAAT ATATGGGAAAGTTCTTGTACTTGATGGGATTGTTCAGTTGACTGAGAAGGATGAATGCGCTTACCAGGAGATGATAGCTC ATCTTCCCCTTTGTTCAATTGCGTCCCCAGAAACTGTTTTAGTTGTTGGTGGCGGAGATGGCGGGGTTCTAAGGGAAGTC TCCCGCCACAGCTCTGTGAAGCGTATTGATATTTGTGAGATAGATAAGATGGTTATTGATGTTTCTAGGAAGTTTTTTCC AGAGTTAGCTGTTGGATTTGATGATCCTCGAGTACACCTGCATGTTGGCGATGCTGTTGAATTTCTTAGATGTACTCCTG AGGGGAAGTATGATGCTATAATTGTTGATTCCTCAGATCCTGTGGGTCCTGCCCAGGAACTTGTAGAGAAACCATTTTTT GAAACATTAGCGAAAGCATTGAGGCCTGGTGGAGTTCTCTGTAACATGGCAGAAAGTATGTGGCTTCATACACACCTTAT CCAAGATATGATCTCCGTCTGTAGAGAAACATTTAAAGGTTCTGTACATTATGCATGGGCAAGTGTTCCTACATATCCGA GTGGTCTGATAGGGTTTCTTCTATGCTCAACGGAGGGGCCACCTGTTGATTTTGTAAACCCCATCAACCCAATTGAAAAG TTGGAAGGTGCAGATAAGCACAAAAGGAAACTTAGATTCTATAACTCAGAGATGCACACAGCTGCTTTCGCGTTGCCTGC ATTTCTGAAGAGGGAGGTGAGCTTGATCCGTGATCCTTCCGCTTAG
Protein sequence (LotjaGi1g1v0282100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGDAAGRGLECQKTMDGKESNRNGLEKELPSCCLKAIASDPELDAKCHSTVVSGWFSAPQTCSGKSGKDAYFNNPMWPGE AHSIKVDKILYKEKSEYQEVLVFESSIYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIASPETVLVVGGGDGGVLREV SRHSSVKRIDICEIDKMVIDVSRKFFPELAVGFDDPRVHLHVGDAVEFLRCTPEGKYDAIIVDSSDPVGPAQELVEKPFF ETLAKALRPGGVLCNMAESMWLHTHLIQDMISVCRETFKGSVHYAWASVPTYPSGLIGFLLCSTEGPPVDFVNPINPIEK LEGADKHKRKLRFYNSEMHTAAFALPAFLKREVSLIRDPSA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 358 | 358 | 2.3E-212 | – | |
| PANTHER | 1 | 358 | 358 | 2.3E-212 | – | |
| PIRSF | 42 | 357 | 316 | 2.0E-135 | ||
| Gene3D | 46 | 119 | 74 | 1.2E-27 | ||
| ProSiteProfiles | 53 | 304 | 252 | 95.042 | ||
| Hamap | 54 | 354 | 301 | 34.044 | ||
| SUPERFAMILY | 71 | 352 | 282 | 6.66E-86 | ||
| Pfam | 75 | 122 | 48 | 7.6E-21 | ||
| TIGRFAM | 79 | 348 | 270 | 4.9E-93 | ||
| Gene3D | 120 | 355 | 236 | 2.1E-91 | – | |
| Pfam | 125 | 310 | 186 | 2.1E-64 | – | |
| ProSitePatterns | 146 | 159 | 14 | - | ||
| CDD | 167 | 253 | 87 | 1.31657E-9 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Biological process | Polyamine metabolic process | The chemical reactions and pathways involving polyamines, any organic compound containing two or more amino groups. |
Expression pattern of LotjaGi1g1v0282100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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