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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0002500 |
| Transcript ID | LotjaGi5g1v0002500.2 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Alpha-amylase; TAIR: AT1G76130.1 alpha-amylase-like 2; Swiss-Prot: sp|Q8LFG1|AMY2_ARATH Probable alpha-amylase 2; TrEMBL-Plants: tr|C6TCX9|C6TCX9_SOYBN Alpha-amylase; Found in the gene: LotjaGi5g1v0002500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:688922..693993) extracted from Lotus japonicus Gifu genome v1.2.
GGAAAGTTTGCCTTCATCATGTTTCAAGAGAAACTAATACTACCCCTACCATTTAACTTGCTAGAATTGGTTCGACTTTA TGGTTTACATCACACTCTTGGATATATCTCTAGAGAGGGTTTATGAGTTTATTCCTTCTTAGCCATGTTCTTGTTTTGTT GTTTTTAACTTTCCATTTAAAAAAAAAATTATAAACACGGCCCGTACGCGTGGAGAATTGGTGCAGCGAAAAATTGTCGT ATTAGCGGCAGAGATAAGGGAACAAAAACAAAAGAGAAGTTGTTATCAGGAATCTGAACCGCGGTGAATCAAAGTAAACG GTATTGATTGGTAGCTTACTCTTCAAGCTTCTTTGTATTGTAGGAGAGAATAGAAGAAGGAACTAGAAGTTGAAATGCAG TAGCAACGTCTGGAATTCCCACTCCACTCTCTATCACTCCGAATTTTGTGTCCCTCTCGACTCAAAAGCTGATTCCAATT CTCTATTACCTTGTTGATTCCAAATCCGCAGATATTTGTGTTTTCTGCCTATTATTAATACTAATGCCTCACGCTCTTCC CTTCCCAACTCAATCTGCACTTCAGGTGCCTTTTCTCTCTAAATCACTATTCCTAATCTTTGACTTCACATAACATGGGC AACACCGCCAGCGTATGCATCCAACAAATGCTCTTCATTCTTTCTGTTTTTATTTTAAATTTAGATTTATGTTCTTATTT GTTGGTTGTTATTGATTGATTAGCAGGAAGAGCAACGCCAAACTGATCAAAAAACTCAAAGAACCCCCCCAAGTGATCAA ACAACTCAAACAAATGATCTCGGTATATATGCTTTTCACTCCTAACCAATTGAGAATTTTATGCTTCAATCACATCACTT TCCTCTGCTCACTGCTTACACTGAAAATGGACTTCGGTTACTAGTTTCATATTTTCACTCCTTACCTTATTCTAATCAAG GGCTTTGTAAAACCATGAAAACTTGCCCGGCCGGTTACTCTATAAAACATATTTAGTAAGGTGGGCTAGCCTAGAATTAA GCTTAACTTGAGATCATTGATGAATGCTTCTTCACGCAGGTACAGTCTTACGAGATGGAAAAGAAATACTTTTTCAGGTA AACTTTAGAGATTCTGGGCTTTGTTGCTTACTTATAATACAACAACTTTCAAGGCAAGCTTGTGCTATACTGATATTATC ATTGTTGTGGTTATTATTATCATGTAGTACTAATTATAGAAAACCCAAATTATCCTTAATTTCACTTCTGTTTTGGCATT TTTGGCTTTATTTGTTCAAGTATTTGCTGTTTATTAATTGCAAAGATGTGAGTGCTGTGATGATCTTGTAAGACATATTT GATTATCATACTCATTTTCTTAGTATATAAGGCTGCTATGAACTTTACATAGAATAGAATTAAAATTTTTTAAAAGAAAA ACCTTTGCAGGCATTCAACTGGGAGTCTCACAAGTACAATTGGTGGGCGAATTTAGAAAGCAAAATTCCTGACATAGCTA GAGCTGGATTTACTTCAGCATGGTTGCCGCCACCAACTCATTCCTTCTCACCTGAAGGTTAACACTTAACAGCTTTAGAG GGATTAGGCATAATAGTAAATATGATGATTTTTCTTGTCTTTCCCCTCTTTTTCAGGTTACACTCCACAGAACCTTTCCT CTCTTAATAGTAAATATGGTTCTGAGTATCAGTTAAAAGCTTTACTTCAAAAGATGAAGAACTGCAAAGTCAGAGCAATG GCTGACATTGTTATCAATCATCGTGTTGGTACCACCCAAGGTCGTGGAGGGATGTATAATCGCTTTGATGGAATTCCATT AGCGTGGGATGAACATGCTGTGACATCATCTACTGGTGGACTGGTAGCATATTCGTTACTCCGTCCATTTCTTTTTAACT GTCCAAAAAGAGAAAAAAAACACACATATTATGAATTCCAATCTCAATCTTACATTCATGATCCTGTTGCATCTATGCAT TGTTTATTTCAGGGTAAGCCAGACACGGGGGCCATTTTCCAAGGGTTTCCCAATATTGACCATACTCAAGATTTTGTGAG AAAGGACATCATAGGATGGCTCCGATGGCTACGTTATAACATAGGCTTTCAGGATTTTCGTTTTGATTTTGCAAAAGGGT AACACATGTTATGCCTTTTGAGTTTAATATATAAGGTTTTCCCTTGGTTTTTTTTCATTATGTACTCATGATTTGTTGAT TTATAGTTTTATGCCTTTCAATTCTGTCCTGTTATAGGTTTTCACCAAAATATGTGAAAGAATACATCGAAGAAGCAAAG CCATTGTTCTCTGTTGGGGAGTACTGGGATTCTTGCAACTACAAGGGTTCTGCTTTGGACTATAACCAAGGTTCAGTGCT TAAATATATTTTTTCATTCCTCAAATCAAATATAATATATAGTTAAAATCTGTAGCTTTTATAAACTGTTAGTAATTTGG ATAAAGGAATTTACAAATTACAACTAAACTAGCCTTTGGCTTACTTATTCACACTCTGCAGATAGCCATAGGCAGCGAAT AATCAATTGGATTGATGGCACTGGACAGCTTTCAACTGCATTCGACTTCACAACAAAGGGAATTCTTCAGGTACCCAACA TTCTGTGCCTAGTATGTTAAATGAACGTTTGAAAAAATGTACATGGAAGTTATTTTCTTCCCCTCTCTCTACCATTCAAA GAGTTAGCACTATCTGTAAAGTCGTCAAAATCTGATAACCTCAAGTGTATTGGCTATTGGATTCATTTAAAATCACATTT CTCACCACAGATCCCTTTTCTCCCATTGCACTTCTTTGTAGGAAGCTGTCAAGGGACAGTTTTGGCGTCTGCGTGATCCT CAAGGGAAGCCACCTGGTGTGGTCGGGTGGTGGCCTTCAAGATCAGTCACATTTATAGATAATCATGACACCGGCTCAAC TCAGGTACTACATTTACTATATGATAAAATGATACATGGGAATGAGATGCTTCTTGGACAATATTGGTAATAAGATCAGT TACTATTCTTATTTCTAGAGCACGAAATGCATCCTGGGGAAAGGGTGTATAATCAGCCCAAATCTATGTGTGCATATCTA ATTTCTCTTTCTGGCAACCTGAAAAGAGAGGCTCATTTTTGGAGCAATGAATTTATGAAAACTAAGTATGCTTTTGAAAC ATACAATTTGCAATGTAAATGGAAATATTCGAGAATAGAGGAGAGACTTAAAGATTATTGGTTAATCAGTCTTTTAATAA TTAAGTTCTATTGCTTTTGTAATTCTGCTGAGAATTCTTGCACCAATATGCAAATATGCCATTTTAACTATTAAATCTTG AGTTTACGCTCTTGTTTCACTCTCTGTGCAGGCTCATTGGCCCTTCCCCAAAGACCATATTATGGAGGTACTTCTTTTTC TGGCTATAATAATGTTCTCAAAATAATTCTTTCCAGTCAAATTTTCAAACTGGTTGATAGAAAATGTTTGAGCTGATAAA TAATCATGTAGCAACAAGAAAGAAAGGCTGTTCTTTTAACTTATATGAATGGAAAAGTATAGTCATGCATTATTTTGAAG AAGGTTTCCTGTGGTCTTTATTGTTACTTCCACTGTTGTTGTACTGCCATGAGACTAAAAGAAATGATCATCTTTTGTAA TTTTGAGAGTTTCTGGAATCCAAGAGGACGTGGGAAGGTCCTTGTGCTCTCTTCTCTCCCTAGCTGTTCTGGTCTAAGTT GTCGTGACTTGCGAGTTAGATACTTTCAGGAAATTCAAAAGTTGTTGAACTTTAGTTCCTAACCCCCAAAAATATTTACA CATGCATTTTTAGTTAAATGGAGTTTGTTAATGTTTATACAATGTTTTGTCTACTACTAACTTTTGAATATTGCAGGGTT ATGCATACATATTGACTCATCCTGGGACACCAACGGTTTTCTATGACCACTTTTATGACTGGGGCAACTCATTTCGTAAT GAGATTGTCAAGTTGGTTAGTAATAGAACTAGTACCATATACTGCATATTTGTATTTGCTTCTATTTTTTCAGAATTAGT TATGAAATCTAGTAGCACGGACACTTAGATAATTTGAATTCCACTGCAGATTGACATTCGCAAGCGTCAAGGTATTCATA GTCGATCACCTATCAGGATTCTGGAGGCCAATGATAACCTATACTCTGCAATAATCGGGGAGAAAGTGTGTATGAAGATT GGAGATGGTTCATGGTGTCCATCTGGGAGGGAGTGGACACTATCAACCTGTGGCTACAATTATGCTGTGTGGCAAAAGTA GTTGCTCTTATAACTTGATTCTTCCTCTACTTGTGGACATGGAAATGAAGAGGAATCTTGTGCTTATGCGCTTAATACAC GGTAAAACCTGATGTTCTGACTTCTGTCATGCAACCACTAGTAGGCTTTCAAAGTTGCTGTGTTAGTAACTTATGTGCTG CTCCTTAAAATTAAAAAGACGCTTTATGTATCTGTATTATGTACTATTAAATATTAATAGCTACTTTGTTTCTGTAATAG ATATATTAATAAAAACTGCTCTCTGCTAATGTAACTATATGTCTAGCCCTAAGTTATCCGTAATCCGGACTAGTATCCTC TCATATGAAATTTCTCTCATGTTCCTTCATGTTGAAATTGTGTGTATCACACTCTTCATATGTATAAAATTCAAAATAAA ACTTGTCTGCACCGGATTCTCTGTGTGAAACCCTGAGGTAGAGCATGCTTAGTAGAGGGGTTTGATTAATCCATGTAGAA GGGTGAAAGGTGGGATTGAAGAAGGTGCTAGTGTTTGAGAAGATAGTGATCTGATCTGAAGAAGTACTTGTCAAGAATAA AATTGGTAAAGGCATGATGTAGTCCTCATATACCCTTTGCCTACCCAATTTCTGTAATTTCATTTTGCTTTTCCTTTTCT AACTGTCATTAGCCTGAGAAGTTACTTGCCAAACTTTCTATTTTGTACCACCCCTTGTGCTACATTTGAATACAAATCTT TGCTTATAAAAAAAAATATAGATTGAATGGCC
CDS sequence (LotjaGi5g1v0002500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCTCACGCTCTTCCCTTCCCAACTCAATCTGCACTTCAGGAAGAGCAACGCCAAACTGATCAAAAAACTCAAAGAAC CCCCCCAAGTGATCAAACAACTCAAACAAATGATCTCGGTACAGTCTTACGAGATGGAAAAGAAATACTTTTTCAGGCAT TCAACTGGGAGTCTCACAAGTACAATTGGTGGGCGAATTTAGAAAGCAAAATTCCTGACATAGCTAGAGCTGGATTTACT TCAGCATGGTTGCCGCCACCAACTCATTCCTTCTCACCTGAAGGTTACACTCCACAGAACCTTTCCTCTCTTAATAGTAA ATATGGTTCTGAGTATCAGTTAAAAGCTTTACTTCAAAAGATGAAGAACTGCAAAGTCAGAGCAATGGCTGACATTGTTA TCAATCATCGTGTTGGTACCACCCAAGGTCGTGGAGGGATGTATAATCGCTTTGATGGAATTCCATTAGCGTGGGATGAA CATGCTGTGACATCATCTACTGGTGGACTGGGTAAGCCAGACACGGGGGCCATTTTCCAAGGGTTTCCCAATATTGACCA TACTCAAGATTTTGTGAGAAAGGACATCATAGGATGGCTCCGATGGCTACGTTATAACATAGGCTTTCAGGATTTTCGTT TTGATTTTGCAAAAGGGTTTTCACCAAAATATGTGAAAGAATACATCGAAGAAGCAAAGCCATTGTTCTCTGTTGGGGAG TACTGGGATTCTTGCAACTACAAGGGTTCTGCTTTGGACTATAACCAAGATAGCCATAGGCAGCGAATAATCAATTGGAT TGATGGCACTGGACAGCTTTCAACTGCATTCGACTTCACAACAAAGGGAATTCTTCAGGAAGCTGTCAAGGGACAGTTTT GGCGTCTGCGTGATCCTCAAGGGAAGCCACCTGGTGTGGTCGGGTGGTGGCCTTCAAGATCAGTCACATTTATAGATAAT CATGACACCGGCTCAACTCAGGCTCATTGGCCCTTCCCCAAAGACCATATTATGGAGGGTTATGCATACATATTGACTCA TCCTGGGACACCAACGGTTTTCTATGACCACTTTTATGACTGGGGCAACTCATTTCGTAATGAGATTGTCAAGTTGATTG ACATTCGCAAGCGTCAAGGTATTCATAGTCGATCACCTATCAGGATTCTGGAGGCCAATGATAACCTATACTCTGCAATA ATCGGGGAGAAAGTGTGTATGAAGATTGGAGATGGTTCATGGTGTCCATCTGGGAGGGAGTGGACACTATCAACCTGTGG CTACAATTATGCTGTGTGGCAAAAGTAG
Protein sequence (LotjaGi5g1v0002500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPHALPFPTQSALQEEQRQTDQKTQRTPPSDQTTQTNDLGTVLRDGKEILFQAFNWESHKYNWWANLESKIPDIARAGFT SAWLPPPTHSFSPEGYTPQNLSSLNSKYGSEYQLKALLQKMKNCKVRAMADIVINHRVGTTQGRGGMYNRFDGIPLAWDE HAVTSSTGGLGKPDTGAIFQGFPNIDHTQDFVRKDIIGWLRWLRYNIGFQDFRFDFAKGFSPKYVKEYIEEAKPLFSVGE YWDSCNYKGSALDYNQDSHRQRIINWIDGTGQLSTAFDFTTKGILQEAVKGQFWRLRDPQGKPPGVVGWWPSRSVTFIDN HDTGSTQAHWPFPKDHIMEGYAYILTHPGTPTVFYDHFYDWGNSFRNEIVKLIDIRKRQGIHSRSPIRILEANDNLYSAI IGEKVCMKIGDGSWCPSGREWTLSTCGYNYAVWQK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 40 | 40 | - | – | |
| MobiDBLite | 10 | 40 | 31 | - | – | |
| PIRSF | 24 | 435 | 412 | 5.3E-182 | ||
| PANTHER | 30 | 434 | 405 | 1.0E-239 | – | |
| PANTHER | 30 | 434 | 405 | 1.0E-239 | – | |
| Gene3D | 48 | 380 | 333 | 5.2E-123 | – | |
| SMART | 48 | 388 | 341 | 6.5E-28 | ||
| CDD | 49 | 387 | 339 | 1.02986E-171 | – | |
| SUPERFAMILY | 55 | 368 | 314 | 2.02E-63 | ||
| Pfam | 68 | 137 | 70 | 3.1E-8 | ||
| PRINTS | 125 | 136 | 12 | 1.5E-5 | ||
| PRINTS | 209 | 220 | 12 | 1.5E-5 | ||
| PRINTS | 312 | 324 | 13 | 1.5E-5 | ||
| SMART | 377 | 435 | 59 | 6.8E-28 | ||
| Pfam | 378 | 434 | 57 | 8.0E-22 | ||
| SUPERFAMILY | 381 | 435 | 55 | 4.68E-15 | – | |
| Gene3D | 381 | 435 | 55 | 3.7E-12 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Molecular function | Alpha-amylase activity | Catalysis of the endohydrolysis of (1->4)-alpha-D-glucosidic linkages in polysaccharides containing three or more alpha-(1->4)-linked D-glucose units. | ||
| Molecular function | Calcium ion binding | Interacting selectively and non-covalently with calcium ions (Ca2+). | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. | ||
| Molecular function | Cation binding | Interacting selectively and non-covalently with cations, charged atoms or groups of atoms with a net positive charge. |
Expression pattern of LotjaGi5g1v0002500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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