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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0028300 |
| Transcript ID | LotjaGi5g1v0028300.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Alpha-amylase; TAIR: AT4G25000.1 alpha-amylase-like protein; Swiss-Prot: sp|P17859|AMYA_VIGMU Alpha-amylase; TrEMBL-Plants: tr|A0A151S840|A0A151S840_CAJCA Alpha-amylase; Found in the gene: LotjaGi5g1v0028300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:4699582..4702160) extracted from Lotus japonicus Gifu genome v1.2.
ATGGATTCTCTCTCTTGGCTCAGCCTTTTTTGCCTCAGTTTTTCACACTTTCCCCTCTTCTCTTCCTCTGCTTTGCTGTT TCAGGTTTCACATACACTTGTTGTTTACTTTGATCTGCACAAGTGCACACAACACACTTCATAATCAACCTTATTTAACC CAGAGTTCTTATTATTTAACTTTGCATGGACATGGTAAATGTTGTCACAGGGTTTCAACTGGGAATCAAGTGGCAAAGGA GGATGGTACAACTCATTGAAAAACTCCATTCCTGACCTAGCAAATGCAGGAATTACCCATGTTTGGCTTCCTCCTCCCTC TCAATCAGTTGCTTCTCAAGGTACCAACAAACATCTCTGTGCCTGCTCACTCATGATTTCATGGTAATGGAGAATGATCA CTATTTGTTATTCAATTTCCTGATACATGATAAAATTTCTGCCAGAAAGTATTACCTTATGTCCTATGCAAAAACTACTT GATACGTTTCATCACTTTCATGAAATATATACTGTGTTTGGATTTGCAGTGTGCACACAATCCAAAACATGGTAACTTTC GAATCTACATTTTGTAACTTCTCCCTAAAGTGATTATGTGACTTCGTACCAAAAAACCAAACATGCTAATTGTCGGCACA GTTTTTCAAAACGAAGCATAGAAAATGCATAAAGACACTATGTGTGGCAAAGTTTTCAAAGTGCACAATAACCGCCCATT CACATAGTGAAATACGCGTATGCATAGTGCTTCATAGTAACTAATGAACACTTATAAACAGCGAGATCCTTCAGTTTCTT CATCCCATACAAGATTTAGCACCCGTTTGAAACACTTTAAGCTTGTATCAAGCTTTGTTCAGTCTTTGAGTGATGTGAGA TGTAGTTAAGATATTTGCTTTGGAGAATGTGAGTGTTCTAGGGTTCTGCAGTGGTTGAGAAAGATTTCTTTGTTGTAAAA AATGTCACATAATGTTATTCTCTGGTTGTCAATATAGACAGCAGTCTTGGTTTTTCTCCGGTTCTGGAGTTTTTCATTTT AAATTCTTGTGTTGTGGTTGTGTTTCTTTTAGATTTCTCTTCGGCGCAATTCCTAACACTAACAATATTATTTGAATCCA GGGTATCTTCCCGGAAGGCTATACGATCTTGATGCATCAAAGTATGGCTCCAAGGATGAACTGAAGTCACTGATTGCAGC TTTCCATGATAAAGGAATCAAATGCCTAGCTGACATAGTCATCAACCACAGAACTGCAGAGAGGAAAGATGGGAGAGGCA TCTACTGCATCTTTGAAGGTGGCACCCCAGATGCAAGTCTTGATTGGGGTCCCTCTTTCATTTGCAGAGATGACACTGCT TACTCTGATGGCAAAGGAAACCTTGACAGTGGAGAAGGCTATGATGCTGCACCTGACATTGACCATCTCAATCCTCAGGT GCAGAGAGAGTTATCTGATTGGATGAACTGGCTCAGGAATGAAGTTGGATTTGATGGGTGGAGGTTTGATTTTGTGAAGG GCTATGCACCAAGCATAACAAAAATTTACATGGAGAAAACTTCACCTGATTTTGCAGTGGGAGAGTATTGGAACTCTCTT TCTTATGGGCAAGATGGGAAGCCTAACTTCAACCAAGATGCTCATAGGGGAGAATTGGTGAATTGGGTTCAATCTGCAGG TGGTGCTGTCAATGCTTTTGATTTCACCACCAAAGGGATTCTTCAAGCTGCTGTACAAGGGGAACTGTGGAGGTTGAAGG ACTCAAATGGCAAGCCACCTGGAATGATTGGTGTAAAACCAGAAAATGCAGTGACTTTTGTTGATAATCATGACACTGGT TCCACTCAGAAACTTTGGCCATTCCCATCTGATAAAGTCATGCAGGGATATGCTTACATTCTAACACATCCTGGGACCCC AACAATAGTACTTTCTTTCTCCAACCTTTTAACTTTCACCATTTTCTTTGTTCAAGTAATTTGATGATTGAACAAGAAAA CTTGGGGGTTAGTCAATTTAGTCCCTCAAAGACGAAAATAGGTAAAATAGTCTCCGAAAGATAAAACAGGATCAATTTAG TCATTGAAATGATTAATTTAATCTTTGAAAGAAAAGGAAGAGCCATTTCAGTCCCTAAAAAACTAAATCGAAATTTGTTT TATCTTTCAAGGACTTTTTTGCGTATTTCCTTAGTAGGGGAGCCAAAGTGACTGATCCTATATCTTTCAGGGACTTAAAG TGACTATTAATCTCATTATGGTATGGTTGTTGCCTTGTTGGATAAGTTTATCATTGTTATCTGTATTGTTAGTATTTCTC TCTTGTTATGCAGTTCTATGACCACTTCTTTGACTGGGGACTGAAGGAGCAGATAGCCAAATTGAGTGCCATAAGAGTAA GGAAAGGGATCAATATGAAAAGCACAGTGAACATTTTAGCTGCTGATTCTGACCTCTATGTTGCAGAAATAGACAACAAG ATCATAGTGAAGATAGGCCCAAAAATGGATCTTGGAAATCTTATTCCCTCAAGTTTCCGCGTTGCTGCCTCTGGCCAAGA CTATGCTGTGTGGGAGTGA
CDS sequence (LotjaGi5g1v0028300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATTCTCTCTCTTGGCTCAGCCTTTTTTGCCTCAGTTTTTCACACTTTCCCCTCTTCTCTTCCTCTGCTTTGCTGTT TCAGGGTTTCAACTGGGAATCAAGTGGCAAAGGAGGATGGTACAACTCATTGAAAAACTCCATTCCTGACCTAGCAAATG CAGGAATTACCCATGTTTGGCTTCCTCCTCCCTCTCAATCAGTTGCTTCTCAAGGGTATCTTCCCGGAAGGCTATACGAT CTTGATGCATCAAAGTATGGCTCCAAGGATGAACTGAAGTCACTGATTGCAGCTTTCCATGATAAAGGAATCAAATGCCT AGCTGACATAGTCATCAACCACAGAACTGCAGAGAGGAAAGATGGGAGAGGCATCTACTGCATCTTTGAAGGTGGCACCC CAGATGCAAGTCTTGATTGGGGTCCCTCTTTCATTTGCAGAGATGACACTGCTTACTCTGATGGCAAAGGAAACCTTGAC AGTGGAGAAGGCTATGATGCTGCACCTGACATTGACCATCTCAATCCTCAGGTGCAGAGAGAGTTATCTGATTGGATGAA CTGGCTCAGGAATGAAGTTGGATTTGATGGGTGGAGGTTTGATTTTGTGAAGGGCTATGCACCAAGCATAACAAAAATTT ACATGGAGAAAACTTCACCTGATTTTGCAGTGGGAGAGTATTGGAACTCTCTTTCTTATGGGCAAGATGGGAAGCCTAAC TTCAACCAAGATGCTCATAGGGGAGAATTGGTGAATTGGGTTCAATCTGCAGGTGGTGCTGTCAATGCTTTTGATTTCAC CACCAAAGGGATTCTTCAAGCTGCTGTACAAGGGGAACTGTGGAGGTTGAAGGACTCAAATGGCAAGCCACCTGGAATGA TTGGTGTAAAACCAGAAAATGCAGTGACTTTTGTTGATAATCATGACACTGGTTCCACTCAGAAACTTTGGCCATTCCCA TCTGATAAAGTCATGCAGGGATATGCTTACATTCTAACACATCCTGGGACCCCAACAATATTCTATGACCACTTCTTTGA CTGGGGACTGAAGGAGCAGATAGCCAAATTGAGTGCCATAAGAGTAAGGAAAGGGATCAATATGAAAAGCACAGTGAACA TTTTAGCTGCTGATTCTGACCTCTATGTTGCAGAAATAGACAACAAGATCATAGTGAAGATAGGCCCAAAAATGGATCTT GGAAATCTTATTCCCTCAAGTTTCCGCGTTGCTGCCTCTGGCCAAGACTATGCTGTGTGGGAGTGA
Protein sequence (LotjaGi5g1v0028300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDSLSWLSLFCLSFSHFPLFSSSALLFQGFNWESSGKGGWYNSLKNSIPDLANAGITHVWLPPPSQSVASQGYLPGRLYD LDASKYGSKDELKSLIAAFHDKGIKCLADIVINHRTAERKDGRGIYCIFEGGTPDASLDWGPSFICRDDTAYSDGKGNLD SGEGYDAAPDIDHLNPQVQRELSDWMNWLRNEVGFDGWRFDFVKGYAPSITKIYMEKTSPDFAVGEYWNSLSYGQDGKPN FNQDAHRGELVNWVQSAGGAVNAFDFTTKGILQAAVQGELWRLKDSNGKPPGMIGVKPENAVTFVDNHDTGSTQKLWPFP SDKVMQGYAYILTHPGTPTIFYDHFFDWGLKEQIAKLSAIRVRKGINMKSTVNILAADSDLYVAEIDNKIIVKIGPKMDL GNLIPSSFRVAASGQDYAVWE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 23 | 23 | - | – | |
| PIRSF | 1 | 421 | 421 | 7.8E-230 | ||
| Phobius | 1 | 3 | 3 | - | – | |
| SignalP_EUK | 1 | 23 | 23 | - | – | |
| Phobius | 4 | 15 | 12 | - | – | |
| PANTHER | 11 | 421 | 411 | 8.9E-231 | – | |
| PANTHER | 11 | 421 | 411 | 8.9E-231 | – | |
| Phobius | 16 | 23 | 8 | - | – | |
| SMART | 24 | 361 | 338 | 7.8E-59 | ||
| Phobius | 24 | 421 | 398 | - | – | |
| Gene3D | 25 | 365 | 341 | 2.4E-148 | – | |
| SUPERFAMILY | 26 | 353 | 328 | 3.06E-80 | ||
| CDD | 26 | 372 | 347 | 8.69006E-172 | – | |
| Pfam | 51 | 342 | 292 | 2.4E-16 | ||
| PRINTS | 103 | 114 | 12 | 1.8E-6 | ||
| PRINTS | 195 | 206 | 12 | 1.8E-6 | ||
| PRINTS | 299 | 311 | 13 | 1.8E-6 | ||
| SMART | 362 | 421 | 60 | 3.0E-31 | ||
| Pfam | 363 | 421 | 59 | 2.5E-20 | ||
| SUPERFAMILY | 366 | 421 | 56 | 4.68E-19 | – | |
| Gene3D | 366 | 421 | 56 | 7.9E-28 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Molecular function | Alpha-amylase activity | Catalysis of the endohydrolysis of (1->4)-alpha-D-glucosidic linkages in polysaccharides containing three or more alpha-(1->4)-linked D-glucose units. | ||
| Molecular function | Calcium ion binding | Interacting selectively and non-covalently with calcium ions (Ca2+). | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. | ||
| Molecular function | Cation binding | Interacting selectively and non-covalently with cations, charged atoms or groups of atoms with a net positive charge. |
Expression pattern of LotjaGi5g1v0028300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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