Domain Predictions — View

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PS01149

Source: ProSitePatterns

Description

Rsu family of pseudouridine synthase signature.

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0001522 View details of GO:0001522 AmiGO InterPro QuickGO	Biological process	Pseudouridine synthesis	The intramolecular conversion of uridine to pseudouridine within an RNA molecule. This posttranscriptional base modification occurs in tRNA, rRNA, and snRNAs.	Subterm of GO:0009451
GO:0003723 View details of GO:0003723 AmiGO InterPro QuickGO	Molecular function	RNA binding	Interacting selectively and non-covalently with an RNA molecule or a portion thereof.	Subterm of GO:0003676
GO:0009451 View details of GO:0009451 AmiGO InterPro QuickGO	Biological process	RNA modification	The covalent alteration of one or more nucleotides within an RNA molecule to produce an RNA molecule with a sequence that differs from that coded genetically.	Subterm of GO:0016070 GO:0043412
GO:0016866 View details of GO:0016866 AmiGO InterPro QuickGO	Molecular function	Intramolecular transferase activity	Catalysis of the transfer of a functional group from one position to another within a single molecule.	Subterm of GO:0016853

Associated Lotus transcripts 3

Transcript	Name	Description	Predicted domains	Domain count
Lj5g3v1795760.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Pseudouridine synthase family protein isoform 2, partial [Theobroma cacao] gi\|508726877\|gb\|EOY18774.1\|	Domains G3DSA:3.10.290.10 IPR002942 IPR006145 IPR018496 IPR020103 NON_CYTOPLASMIC_DOMAIN PF00849 PF01479 PS01149 PS50889 PTHR21600 PTHR21600:SF11 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SM00363 SSF55120 SSF55174 SignalP-TM_GRAM_POSITIVE cd00165 mobidb-lite	22
Lj5g3v1795760.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Pseudouridine synthase family protein isoform 3 [Theobroma cacao] gi\|508726878\|gb\|EOY18775.1\|	Domains G3DSA:3.10.290.10 IPR002942 IPR006145 IPR018496 IPR020103 NON_CYTOPLASMIC_DOMAIN PF00849 PF01479 PS01149 PS50889 PTHR21600 PTHR21600:SF11 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SM00363 SSF55120 SSF55174 SignalP-TM_GRAM_POSITIVE cd00165 mobidb-lite	22
LotjaGi5g1v0270600.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Ribosomal large subunit pseudouridine synthase B; TAIR: AT2G39140.1 pseudouridine synthase family protein; Swiss-Prot: sp\|P35159\|RLUB_BACSU Ribosomal large subunit pseudouridine synthase B; TrEMBL-Plants: tr\|A0A151SE04\|A0A151SE04_CAJCA Ribosomal large subunit pseudouridine synthase B; Found in the gene: LotjaGi5g1v0270600	Domains G3DSA:3.10.290.10 G3DSA:3.30.70.1560 G3DSA:3.30.70.580 IPR002942 IPR006145 IPR018496 IPR020103 IPR036986 IPR042092 NON_CYTOPLASMIC_DOMAIN PF00849 PF01479 PS01149 PS50889 PTHR47683 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SM00363 SSF55120 SSF55174 SignalP-TM cd00165 mobidb-lite	25

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
mobidb-lite	MobiDBLite	1	33.33